Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
CLSTN1	22883	broad.mit.edu	37	1	9804038	9804038	+	Silent	SNP	G	G	C			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr1:9804038G>C	uc001aqh.2	-	9	2019	c.1260C>G	c.(1258-1260)CTC>CTG	p.L420L	CLSTN1_uc001aqi.2_Silent_p.L410L|CLSTN1_uc010oag.1_Silent_p.L420L	NM_001009566	NP_001009566	O94985	CSTN1_HUMAN	calsyntenin 1 isoform 1	420	Extracellular (Potential).				homophilic cell adhesion	cell junction|cell projection|endoplasmic reticulum membrane|Golgi membrane|integral to membrane|nucleus|postsynaptic membrane	calcium ion binding			skin(1)	1	all_lung(157;0.222)	all_lung(284;4.03e-05)|Lung NSC(185;6.93e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00314)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|Colorectal(212;8.36e-08)|COAD - Colon adenocarcinoma(227;1.93e-05)|Kidney(185;0.000342)|BRCA - Breast invasive adenocarcinoma(304;0.000949)|KIRC - Kidney renal clear cell carcinoma(229;0.00122)|STAD - Stomach adenocarcinoma(132;0.00644)|READ - Rectum adenocarcinoma(331;0.0419)		CGTGGACATAGAGGGAGTAGT	0.458		NA											34	72					0	0	0	0
CAP1	10487	broad.mit.edu	37	1	40525048	40525048	+	Missense_Mutation	SNP	A	A	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr1:40525048A>T	uc001cfa.3	+	2	259	c.30A>T	c.(28-30)AGA>AGT	p.R10S	CAP1_uc010ojd.1_RNA|CAP1_uc001cey.3_Missense_Mutation_p.R10S|CAP1_uc001cez.3_Missense_Mutation_p.R10S|CAP1_uc009vvz.2_Missense_Mutation_p.R10S|CAP1_uc010oje.1_5'UTR	NM_006367	NP_006358	Q01518	CAP1_HUMAN	adenylyl cyclase-associated protein	10					activation of adenylate cyclase activity|axon guidance|establishment or maintenance of cell polarity|platelet activation|platelet degranulation|signal transduction	plasma membrane	actin binding			ovary(1)	1	Lung NSC(20;5.03e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;4.63e-18)|Epithelial(16;1.27e-16)|all cancers(16;2.3e-15)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			TGGTAGAAAGATTGGAGAGGG	0.453		NA											27	69					0	0	0	0
RLF	6018	broad.mit.edu	37	1	40661333	40661334	+	Missense_Mutation	DNP	GA	GA	AT			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr1:40661333_40661334GA>AT	uc001cfc.3	+	4	535_536	c.504_505GA>AT	c.(502-507)GGGAAT>GGATAT	p.N169Y		NM_012421	NP_036553	Q13129	RLF_HUMAN	rearranged L-myc fusion	169					chromosome organization|DNA integration|DNA mediated transformation|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			ovary(2)|pancreas(1)	3	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;5.87e-19)|Epithelial(16;7.02e-16)|all cancers(16;1.69e-14)|Lung(16;0.0427)|LUSC - Lung squamous cell carcinoma(16;0.0461)			TGGAATTTGGGAATAATAACCT	0.356		NA											11	29					0	0	0	0
POMGNT1	55624	broad.mit.edu	37	1	46658985	46658985	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr1:46658985C>T	uc001cpe.2	-	12	1266	c.1102G>A	c.(1102-1104)GTG>ATG	p.V368M	POMGNT1_uc010olx.1_Missense_Mutation_p.V346M|POMGNT1_uc010oly.1_RNA|POMGNT1_uc010olz.1_Missense_Mutation_p.V225M|POMGNT1_uc001cpg.2_Missense_Mutation_p.V368M|POMGNT1_uc001cpf.2_Missense_Mutation_p.V35M|POMGNT1_uc001cph.1_5'Flank|POMGNT1_uc001cpi.1_Missense_Mutation_p.V35M	NM_017739	NP_060209	Q8WZA1	PMGT1_HUMAN	O-linked mannose	368	Lumenal (Potential).				protein N-linked glycosylation|protein O-linked glycosylation	Golgi membrane|integral to membrane|microsome	alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity|beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					ACCTGAGACACGCGGGCATTC	0.587		NA											13	23					0	0	0	0
AK5	26289	broad.mit.edu	37	1	77984359	77984359	+	Nonsense_Mutation	SNP	G	G	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr1:77984359G>T	uc001dhn.2	+	11	1515	c.1258G>T	c.(1258-1260)GAA>TAA	p.E420*	AK5_uc001dho.2_Nonsense_Mutation_p.E394*	NM_174858	NP_777283	Q9Y6K8	KAD5_HUMAN	adenylate kinase 5 isoform 1	420					ADP biosynthetic process|ATP metabolic process|dADP biosynthetic process|nucleobase, nucleoside and nucleotide interconversion|pyrimidine ribonucleotide biosynthetic process|signal transduction	centrosome|cytosol	adenylate kinase activity|ATP binding|cAMP-dependent protein kinase regulator activity|nucleoside kinase activity			skin(1)	1						ATCAGAATCTGAAAGAAGCAA	0.488		NA											19	49					1.56e-12	6.79e-12	1	0
CSDE1	7812	broad.mit.edu	37	1	115267850	115267850	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr1:115267850G>A	uc001efk.2	-	15	2211	c.1745C>T	c.(1744-1746)ACA>ATA	p.T582I	CSDE1_uc001efi.2_Missense_Mutation_p.T628I|CSDE1_uc001efj.2_RNA|CSDE1_uc001efl.2_Missense_Mutation_p.T551I|CSDE1_uc001efm.2_Missense_Mutation_p.T597I|CSDE1_uc009wgv.2_Missense_Mutation_p.T582I|CSDE1_uc001efn.2_Missense_Mutation_p.T551I	NM_001007553	NP_001007554	O75534	CSDE1_HUMAN	upstream of NRAS isoform 1	582					male gonad development|regulation of transcription, DNA-dependent	cytoplasm	DNA binding|protein binding|RNA binding			ovary(1)	1	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;2.21e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		ACCTGAGTGTGTTTTGTTCAC	0.423		NA											44	121					0	0	0	0
S100A11	6282	broad.mit.edu	37	1	152005278	152005278	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr1:152005278G>A	uc001ezn.2	-	3	298	c.178C>T	c.(178-180)CTT>TTT	p.L60F	uc001ezm.1_Intron	NM_005620	NP_005611	P31949	S10AB_HUMAN	S100 calcium binding protein A11	60	EF-hand 2.				negative regulation of cell proliferation|negative regulation of DNA replication|signal transduction	cytoplasm|nucleus|ruffle	calcium ion binding|calcium-dependent protein binding|protein homodimerization activity|S100 beta binding				0	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			ATGCGGTCAAGGACACCAGGG	0.308		NA											10	54					0	0	0	0
DENND4B	9909	broad.mit.edu	37	1	153905172	153905172	+	Silent	SNP	G	G	A			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr1:153905172G>A	uc001fdd.1	-	23	4106	c.3705C>T	c.(3703-3705)GAC>GAT	p.D1235D	uc001fdc.1_Intron	NM_014856	NP_055671	O75064	DEN4B_HUMAN	DENN/MADD domain containing 4B	1235										ovary(1)	1	all_lung(78;2.89e-32)|Lung NSC(65;2.27e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			AGAGCCTTCGGTCACTGAGCA	0.627		NA											22	62					0	0	0	0
BLZF1	8548	broad.mit.edu	37	1	169345895	169345895	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr1:169345895G>C	uc001gfx.1	+	3	583	c.146G>C	c.(145-147)AGT>ACT	p.S49T	BLZF1_uc001gfw.2_Missense_Mutation_p.S49T|BLZF1_uc001gfy.2_Missense_Mutation_p.S49T|BLZF1_uc009wvp.1_Missense_Mutation_p.S26T	NM_003666	NP_003657	Q9H2G9	GO45_HUMAN	basic leucine zipper nuclear factor 1	49					cell proliferation|Golgi organization|Golgi to plasma membrane protein transport|regulation of cell growth|regulation of transcription from RNA polymerase II promoter	Golgi lumen|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|ubiquitin protein ligase binding			skin(1)	1	all_hematologic(923;0.208)					AGTCTTCAGAGTCCATGGAAG	0.438		NA											15	54					0	0	0	0
PIGC	5279	broad.mit.edu	37	1	172411603	172411603	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr1:172411603C>T	uc001gil.2	-	2	441	c.160G>A	c.(160-162)GAG>AAG	p.E54K	PIGC_uc001gii.1_Intron|PIGC_uc001gij.1_Intron|C1orf105_uc001gik.2_Intron|PIGC_uc001gin.2_Missense_Mutation_p.E54K|PIGC_uc001gio.2_Missense_Mutation_p.E54K	NM_153747	NP_714969	Q92535	PIGC_HUMAN	phosphatidylinositol glycan, class C	54	Helical; (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex|integral to membrane	phosphatidylinositol N-acetylglucosaminyltransferase activity			lung(1)	1						ACACTGGACTCAAATACCACA	0.498		NA											32	109					0	0	0	0
USH2A	7399	broad.mit.edu	37	1	216462695	216462695	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr1:216462695G>C	uc001hku.1	-	11	2285	c.1898C>G	c.(1897-1899)TCG>TGG	p.S633W	USH2A_uc001hkv.2_Missense_Mutation_p.S633W	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	633	Laminin EGF-like 2.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		ATCTATGGCCGAAGGATCTGC	0.408		NA								HNSCC(13;0.011)			17	54					0	0	0	0
FMN2	56776	broad.mit.edu	37	1	240492663	240492663	+	Silent	SNP	C	C	A			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr1:240492663C>A	uc010pyd.1	+	10	4557	c.4332C>A	c.(4330-4332)ATC>ATA	p.I1444I	FMN2_uc010pye.1_Silent_p.I1448I|FMN2_uc010pyf.1_Silent_p.I90I|FMN2_uc010pyg.1_Silent_p.I40I	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1444	FH2.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			TGTCACTAATCCCCAACTTTT	0.358		NA											16	64					1.36e-06	5.47e-06	1	0
RBP3	5949	broad.mit.edu	37	10	48388506	48388506	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr10:48388506G>A	uc001jez.2	-	1	2486	c.2372C>T	c.(2371-2373)ACG>ATG	p.T791M		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	791	4 X approximate tandem repeats.|3.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	CGGGATGGCCGTGGAGTAGCT	0.622		NA											8	17					0	0	0	0
JMJD1C	221037	broad.mit.edu	37	10	64966567	64966567	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr10:64966567G>A	uc001jmn.2	-	10	5162	c.4862C>T	c.(4861-4863)ACT>ATT	p.T1621I	JMJD1C_uc001jml.2_Missense_Mutation_p.T1402I|JMJD1C_uc001jmm.2_Missense_Mutation_p.T1333I|JMJD1C_uc010qiq.1_Missense_Mutation_p.T1439I|JMJD1C_uc009xpi.2_Missense_Mutation_p.T1439I|JMJD1C_uc009xpj.1_RNA|JMJD1C_uc009xpk.1_Missense_Mutation_p.T658I	NM_032776	NP_116165	Q15652	JHD2C_HUMAN	jumonji domain containing 1C isoform a	1621					blood coagulation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	histone demethylase activity (H3-K9 specific)|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|thyroid hormone receptor binding			ovary(4)|breast(1)|central_nervous_system(1)	6	Prostate(12;0.0119)|all_hematologic(501;0.191)					AGATTCATAAGTTCTTTTGGC	0.348		NA											24	71					0	0	0	0
HKDC1	80201	broad.mit.edu	37	10	70992576	70992576	+	Missense_Mutation	SNP	G	G	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr10:70992576G>T	uc001jpf.3	+	3	416	c.283G>T	c.(283-285)GTG>TTG	p.V95L	HKDC1_uc010qje.1_5'Flank	NM_025130	NP_079406	Q2TB90	HKDC1_HUMAN	hexokinase domain containing 1	95					glycolysis	mitochondrion|nucleus	ATP binding|hexokinase activity			ovary(4)|skin(1)	5						AGTGCTGAAGGTGCAAGTCGC	0.458		NA											37	100					1.42e-22	6.49e-22	1	0
STAMBPL1	57559	broad.mit.edu	37	10	90665316	90665316	+	Silent	SNP	A	A	G			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr10:90665316A>G	uc001kfk.2	+	3	570	c.147A>G	c.(145-147)CGA>CGG	p.R49R	STAMBPL1_uc010qmx.1_Silent_p.R49R|STAMBPL1_uc009xto.2_RNA|STAMBPL1_uc001kfl.2_Silent_p.R49R|STAMBPL1_uc001kfm.2_5'Flank	NM_020799	NP_065850	Q96FJ0	STALP_HUMAN	STAM binding protein-like 1	49							metal ion binding|metallopeptidase activity|protein binding			ovary(1)	1		Colorectal(252;0.0381)		Colorectal(12;6.38e-05)|COAD - Colon adenocarcinoma(12;7.75e-05)		TCACTCCACGACGTTACTTTA	0.423		NA											27	58					0	0	0	0
TNKS2	80351	broad.mit.edu	37	10	93619309	93619309	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr10:93619309C>T	uc001khp.2	+	25	3482	c.3185C>T	c.(3184-3186)GCT>GTT	p.A1062V		NM_025235	NP_079511	Q9H2K2	TNKS2_HUMAN	tankyrase, TRF1-interacting ankyrin-related	1062	PARP catalytic.				positive regulation of canonical Wnt receptor signaling pathway|protein auto-ADP-ribosylation|protein localization to chromosome, telomeric region|protein polyubiquitination|Wnt receptor signaling pathway	Golgi membrane|microsome|nuclear envelope|pericentriolar material|perinuclear region of cytoplasm	NAD+ ADP-ribosyltransferase activity|protein binding			kidney(3)|skin(3)|ovary(1)|lung(1)	8		Colorectal(252;0.162)				ATTTATTTTGCTGAAAACTCT	0.403		NA											25	62					0	0	0	0
MMS19	64210	broad.mit.edu	37	10	99228076	99228076	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr10:99228076C>T	uc001kns.3	-	13	1376	c.1151G>A	c.(1150-1152)CGG>CAG	p.R384Q	MMS19_uc009xvs.2_5'Flank|MMS19_uc009xvt.2_Intron|MMS19_uc001knr.2_Missense_Mutation_p.R226Q|MMS19_uc010qox.1_Missense_Mutation_p.R362Q|MMS19_uc001knt.2_Missense_Mutation_p.R384Q|MMS19_uc001knu.1_RNA	NM_022362	NP_071757	Q96T76	MMS19_HUMAN	MMS19 nucleotide excision repair homolog	384					chromosome segregation|nucleotide-excision repair|positive regulation of transcription, DNA-dependent|response to hormone stimulus|transcription, DNA-dependent|two-component signal transduction system (phosphorelay)	cytoplasm|holo TFIIH complex|MMXD complex	estrogen receptor binding|protein binding, bridging|receptor signaling complex scaffold activity|transcription coactivator activity				0		Colorectal(252;0.0846)		Epithelial(162;3.33e-10)|all cancers(201;2.74e-08)		GTCACAGGCCCGGGCAGATGC	0.552		NA						Direct_reversal_of_damage|NER					22	74					0	0	0	0
ADAM12	8038	broad.mit.edu	37	10	127724751	127724751	+	Missense_Mutation	SNP	T	T	G			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr10:127724751T>G	uc001ljk.2	-	21	2915	c.2502A>C	c.(2500-2502)AGA>AGC	p.R834S	ADAM12_uc010qul.1_Missense_Mutation_p.R785S	NM_003474	NP_003465	O43184	ADA12_HUMAN	ADAM metallopeptidase domain 12 isoform 1	834	SH3-binding; class II (By similarity).|SH3-binding; class I (By similarity).|Cytoplasmic (Potential).				cell adhesion|epidermal growth factor receptor signaling pathway|myoblast fusion|proteolysis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|protein binding|SH3 domain binding|zinc ion binding			breast(4)|ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	9		all_epithelial(44;7.06e-05)|all_lung(145;0.00563)|Lung NSC(174;0.00834)|Colorectal(57;0.102)|all_neural(114;0.107)|Breast(234;0.22)		COAD - Colon adenocarcinoma(40;0.141)|Colorectal(40;0.216)		CTGGCAGGGGTCTGGCAGGGA	0.502		NA											10	48					0	0	0	0
TNNT3	7140	broad.mit.edu	37	11	1956071	1956071	+	Silent	SNP	G	G	A			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr11:1956071G>A	uc001luu.3	+	14	815	c.603G>A	c.(601-603)AAG>AAA	p.K201K	TNNT3_uc001lun.2_Silent_p.K97K|TNNT3_uc001luw.3_Silent_p.K193K|TNNT3_uc001luo.3_Silent_p.K193K|TNNT3_uc001lup.3_Silent_p.K199K|TNNT3_uc001luq.3_Silent_p.K193K|TNNT3_uc001lur.2_Silent_p.K193K|TNNT3_uc010qxf.1_Silent_p.K199K|TNNT3_uc010qxg.1_Silent_p.K133K	NM_006757	NP_006748	P45378	TNNT3_HUMAN	troponin T3, skeletal, fast isoform 1	212					muscle filament sliding|regulation of ATPase activity|regulation of striated muscle contraction|skeletal muscle contraction	cytosol|troponin complex	calcium-dependent protein binding|tropomyosin binding|troponin C binding|troponin I binding			ovary(1)	1		all_epithelial(84;0.000138)|Breast(177;0.000962)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00253)|Lung(200;0.0333)|LUSC - Lung squamous cell carcinoma(625;0.0826)		ACAAGGCCAAGGAGCTCTGGG	0.612		NA											46	149					0	0	0	0
ART1	417	broad.mit.edu	37	11	3681420	3681420	+	Missense_Mutation	SNP	G	G	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr11:3681420G>T	uc001lye.1	+	3	772	c.671G>T	c.(670-672)TGC>TTC	p.C224F	ART1_uc009yeb.1_Missense_Mutation_p.C224F	NM_004314	NP_004305	P52961	NAR1_HUMAN	ADP-ribosyltransferase 1 precursor	224					protein ADP-ribosylation	anchored to membrane|integral to plasma membrane|sarcoplasmic reticulum membrane	NAD(P)+-protein-arginine ADP-ribosyltransferase activity|NAD+ ADP-ribosyltransferase activity				0		Medulloblastoma(188;0.0025)|Breast(177;0.00328)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0351)|LUSC - Lung squamous cell carcinoma(625;0.195)	Becaplermin(DB00102)	ATCTGGACCTGCCTTGGGGCC	0.602		NA											20	55					8.28e-16	3.69e-15	1	0
DCDC1	341019	broad.mit.edu	37	11	31312208	31312208	+	Nonsense_Mutation	SNP	C	C	A			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr11:31312208C>A	uc001msv.2	-	7	1148	c.946G>T	c.(946-948)GAA>TAA	p.E316*	DCDC1_uc001msu.1_Intron	NM_181807	NP_861523	P59894	DCDC1_HUMAN	doublecortin domain containing 1	316					intracellular signal transduction					skin(1)	1	Lung SC(675;0.225)					TTCATTGTTTCTTTTCCCACT	0.323		NA											12	38					5.17e-11	2.21e-10	1	0
PHF21A	51317	broad.mit.edu	37	11	45967551	45967551	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr11:45967551C>T	uc001ncc.3	-	14	1913	c.1289G>A	c.(1288-1290)CGT>CAT	p.R430H	PHF21A_uc001ncb.3_Intron|PHF21A_uc009ykx.2_Intron|PHF21A_uc001nce.2_Missense_Mutation_p.R431H|PHF21A_uc001nca.1_Missense_Mutation_p.R166H	NM_001101802	NP_001095272	Q96BD5	PF21A_HUMAN	BRAF35/HDAC2 complex isoform a	430	A.T hook.				blood coagulation|chromatin modification|negative regulation of transcription from RNA polymerase II promoter|regulation of transcription, DNA-dependent|transcription, DNA-dependent	histone deacetylase complex	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2						TTTTGGAGGACGACCTATATA	0.488		NA											20	72					0	0	0	0
OR5D13	390142	broad.mit.edu	37	11	55540981	55540981	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr11:55540981C>T	uc010ril.1	+	1	68	c.68C>T	c.(67-69)CCA>CTA	p.P23L		NM_001001967	NP_001001967	Q8NGL4	OR5DD_HUMAN	olfactory receptor, family 5, subfamily D,	23	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3		all_epithelial(135;0.196)				TCAGAATACCCAGAAATCCAG	0.373		NA											9	120					0	0	0	0
PCNXL3	399909	broad.mit.edu	37	11	65396095	65396095	+	Silent	SNP	C	C	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr11:65396095C>T	uc001oey.2	+	23	3732	c.3732C>T	c.(3730-3732)TTC>TTT	p.F1244F	PCNXL3_uc001oez.2_Silent_p.F131F	NM_032223	NP_115599	Q9H6A9	PCX3_HUMAN	pecanex-like 3	1244	Helical; (Potential).					integral to membrane					0						AGCTGCGTTTCGTGCTGACCT	0.602		NA											20	52					0	0	0	0
WNK1	65125	broad.mit.edu	37	12	993920	993920	+	Missense_Mutation	SNP	A	A	G			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr12:993920A>G	uc001qio.3	+	19	4457	c.3950A>G	c.(3949-3951)GAA>GGA	p.E1317G	WNK1_uc001qip.3_Missense_Mutation_p.E1070G|WNK1_uc001qir.3_Missense_Mutation_p.E490G	NM_018979	NP_061852	Q9H4A3	WNK1_HUMAN	WNK lysine deficient protein kinase 1	1317					intracellular protein kinase cascade|ion transport|neuron development	cytoplasm	ATP binding|protein binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			stomach(6)|breast(6)|ovary(5)|lung(4)|large_intestine(1)|central_nervous_system(1)	23	all_cancers(10;0.00611)|all_epithelial(11;0.00825)|all_lung(10;0.0331)|Ovarian(42;0.0512)|Lung NSC(10;0.0632)		Epithelial(1;1.74e-08)|all cancers(1;7.04e-08)|OV - Ovarian serous cystadenocarcinoma(31;0.000423)|BRCA - Breast invasive adenocarcinoma(9;0.0149)|Colorectal(1;0.0197)			CAAATGACAGAAGGACCCAAC	0.478		NA											37	71					0	0	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43826562	43826562	+	Missense_Mutation	SNP	T	T	C			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr12:43826562T>C	uc010skx.1	-	20	2773	c.2773A>G	c.(2773-2775)AGA>GGA	p.R925G	ADAMTS20_uc001rno.1_Missense_Mutation_p.R79G|ADAMTS20_uc001rnp.1_Missense_Mutation_p.R79G	NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	925	TSP type-1 3.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		TCCAAGGTTCTATATCCTTGA	0.383		NA											3	176					0	0	0	0
SLC26A10	65012	broad.mit.edu	37	12	58014188	58014189	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr12:58014188_58014189CC>AA	uc001spe.2	+	1	496_497	c.185_186CC>AA	c.(184-186)CCC>CAA	p.P62Q	uc001spc.2_5'Flank|SLC26A10_uc001spf.2_RNA	NM_133489	NP_597996	Q8NG04	S2610_HUMAN	solute carrier family 26, member 10	62	Helical; (Potential).					integral to membrane	antiporter activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(17;0.122)					TCTTTCTTCCCCGTCCTCATCT	0.54		NA											10	624					0	0	0	0
B4GALNT1	2583	broad.mit.edu	37	12	58021971	58021971	+	Silent	SNP	G	G	A			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr12:58021971G>A	uc001spg.1	-	9	1509	c.1077C>T	c.(1075-1077)TTC>TTT	p.F359F	B4GALNT1_uc010sru.1_Silent_p.F304F	NM_001478	NP_001469	Q00973	B4GN1_HUMAN	beta-1,4-N-acetyl-galactosaminyl transferase 1	359	Lumenal (Potential).				lipid glycosylation	integral to Golgi membrane|membrane fraction	(N-acetylneuraminyl)-galactosylglucosylceramide N-acetylgalactosaminyltransferase activity				0	Melanoma(17;0.122)		BRCA - Breast invasive adenocarcinoma(9;0.109)			CCGTGAAGACGAAGTCGTCGT	0.652		NA											17	75					0	0	0	0
WSCD2	9671	broad.mit.edu	37	12	108618515	108618515	+	Splice_Site	SNP	G	G	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr12:108618515G>T	uc001tms.2	+	5	1427	c.683_splice	c.e5-1	p.Y228_splice	WSCD2_uc001tmt.2_Splice_Site_p.Y228_splice|WSCD2_uc001tmu.2_5'Flank	NM_014653	NP_055468	Q2TBF2	WSCD2_HUMAN	WSC domain containing 2							integral to membrane				ovary(1)|large_intestine(1)|breast(1)	3						TGGCTCTTCAGATGGAAGTGC	0.448		NA											22	86					9.96e-16	4.41e-15	1	0
FAM101A	144347	broad.mit.edu	37	12	124798965	124798965	+	Missense_Mutation	SNP	C	C	A			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr12:124798965C>A	uc001ugd.1	+	3	545	c.302C>A	c.(301-303)ACC>AAC	p.T101N	FAM101A_uc001uge.1_Missense_Mutation_p.T101N	NM_181709	NP_859060	Q6ZTI6	F101A_HUMAN	hypothetical protein LOC144347	182											0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			Epithelial(86;2.38e-05)|OV - Ovarian serous cystadenocarcinoma(86;6.95e-05)|all cancers(50;0.000361)|BRCA - Breast invasive adenocarcinoma(302;0.059)		TTCCGGACCACCCTGCACTGC	0.706		NA											26	59					7.34e-06	2.91e-05	1	0
ING1	3621	broad.mit.edu	37	13	111368155	111368155	+	Missense_Mutation	SNP	T	T	G			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr13:111368155T>G	uc001vri.2	+	1	797	c.365T>G	c.(364-366)GTG>GGG	p.V122G	CARS2_uc010tjm.1_5'Flank|uc001vre.2_5'Flank|ING1_uc001vrf.2_Intron|ING1_uc001vrg.2_Intron|ING1_uc001vrh.2_Intron	NM_005537	NP_005528	Q9UK53	ING1_HUMAN	inhibitor of growth family, member 1 isoform D	122					cell cycle|negative regulation of cell growth|negative regulation of cell proliferation	nucleus	zinc ion binding			ovary(1)	1	all_lung(23;3.61e-05)|Lung NSC(43;0.00144)|Lung SC(71;0.0753)|all_neural(89;0.077)|Medulloblastoma(90;0.148)		BRCA - Breast invasive adenocarcinoma(86;0.188)			GCCTGGCGGGTGTCGCCCCTG	0.721		NA											4	5					0	0	0	0
POTEG	404785	broad.mit.edu	37	14	19553628	19553628	+	Missense_Mutation	SNP	G	G	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr14:19553628G>T	uc001vuz.1	+	1	264	c.212G>T	c.(211-213)TGG>TTG	p.W71L	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	71										ovary(1)	1						TGCTTCCCCTGGTGCAGGGGG	0.587		NA											80	698					1.38e-34	6.46e-34	1	0
HEATR5A	25938	broad.mit.edu	37	14	31814337	31814337	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr14:31814337C>T	uc001wrf.3	-	14	2212	c.2135G>A	c.(2134-2136)CGC>CAC	p.R712H	HEATR5A_uc010ami.2_Missense_Mutation_p.R610H|HEATR5A_uc001wrg.1_Missense_Mutation_p.R594H|HEATR5A_uc010tpk.1_Missense_Mutation_p.R1005H	NM_015473	NP_056288	Q86XA9	HTR5A_HUMAN	HEAT repeat containing 5A	999							binding			ovary(1)	1	Hepatocellular(127;0.0877)|Breast(36;0.137)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.0797)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.0059)		ATTCAAACAGCGACCAAGGCT	0.388		NA											35	111					0	0	0	0
TXNDC16	57544	broad.mit.edu	37	14	53010231	53010231	+	Silent	SNP	G	G	C			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr14:53010231G>C	uc001wzs.2	-	3	494	c.45C>G	c.(43-45)GTC>GTG	p.V15V	TXNDC16_uc010tqu.1_Silent_p.V15V|TXNDC16_uc010aoe.2_RNA	NM_020784	NP_065835	Q9P2K2	TXD16_HUMAN	thioredoxin domain containing 16 isoform 1	15					cell redox homeostasis	extracellular region					0	Breast(41;0.0716)					TGCACATTATGACAAAAGAGA	0.318		NA											16	50					0	0	0	0
OR4N4	283694	broad.mit.edu	37	15	22382574	22382574	+	Missense_Mutation	SNP	C	C	A			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr15:22382574C>A	uc001yuc.1	+	7	1083	c.102C>A	c.(100-102)TTC>TTA	p.F34L	LOC727924_uc001yub.1_RNA|OR4N4_uc010tzv.1_Missense_Mutation_p.F34L	NM_001005241	NP_001005241	Q8N0Y3	OR4N4_HUMAN	olfactory receptor, family 4, subfamily N,	34	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		TCTTAATTTTCTACCTTATCA	0.423		NA											67	98					2.36e-34	1.1e-33	1	0
TRIM69	140691	broad.mit.edu	37	15	45047401	45047401	+	Nonsense_Mutation	SNP	A	A	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr15:45047401A>T	uc001zuf.2	+	3	1205	c.310A>T	c.(310-312)AAG>TAG	p.K104*	TRIM69_uc001zui.1_Intron|TRIM69_uc010bdy.1_Intron|TRIM69_uc001zug.1_Nonsense_Mutation_p.K104*|TRIM69_uc001zuh.1_Intron	NM_182985	NP_892030	Q86WT6	TRI69_HUMAN	tripartite motif-containing 69 isoform a	104	Necessary for nuclear localization (By similarity).				apoptosis	nuclear speck	zinc ion binding				0		all_cancers(109;2.47e-13)|all_epithelial(112;2.84e-11)|Lung NSC(122;2.23e-07)|all_lung(180;1.81e-06)|Melanoma(134;0.0122)		all cancers(107;5.5e-19)|GBM - Glioblastoma multiforme(94;1.07e-06)|Colorectal(105;0.138)|COAD - Colon adenocarcinoma(120;0.141)		AGAGAAGATTAAGAAGTTACC	0.438		NA											23	33					0	0	0	0
FAM81A	145773	broad.mit.edu	37	15	59806519	59806519	+	Missense_Mutation	SNP	C	C	A			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr15:59806519C>A	uc002agc.2	+	7	869	c.682C>A	c.(682-684)CAG>AAG	p.Q228K		NM_152450	NP_689663	Q8TBF8	FA81A_HUMAN	hypothetical protein LOC145773	228										ovary(1)	1						ACTCAGTAACCAGATATTATC	0.279		NA											16	28					0.000308642	0.00116083	1	0
ADAMTS7	11173	broad.mit.edu	37	15	79059041	79059041	+	Missense_Mutation	SNP	T	T	C			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr15:79059041T>C	uc002bej.3	-	19	3423	c.3212A>G	c.(3211-3213)AAT>AGT	p.N1071S	ADAMTS7_uc010und.1_3'UTR	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1071					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						CTCGTGGAAATTGATGAAATT	0.617		NA											5	42					0	0	0	0
POLG	5428	broad.mit.edu	37	15	89864134	89864134	+	Silent	SNP	G	G	A			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr15:89864134G>A	uc002bns.3	-	18	3126	c.2844C>T	c.(2842-2844)ATC>ATT	p.I948I	POLG_uc002bnr.3_Silent_p.I948I	NM_002693	NP_002684	P54098	DPOG1_HUMAN	DNA-directed DNA polymerase gamma	948					base-excision repair, gap-filling|cell death|DNA-dependent DNA replication	mitochondrial nucleoid	DNA binding|DNA-directed DNA polymerase activity|protease binding			ovary(1)|lung(1)	2	Lung NSC(78;0.0472)|all_lung(78;0.089)		STAD - Stomach adenocarcinoma(125;0.165)			CGTAGTTGAAGATTTTGGCAT	0.557		NA						DNA_polymerases_(catalytic_subunits)					14	32					0	0	0	0
OR2C1	4993	broad.mit.edu	37	16	3406177	3406177	+	Silent	SNP	C	C	G			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr16:3406177C>G	uc002cuw.1	+	1	289	c.237C>G	c.(235-237)CCC>CCG	p.P79P		NM_012368	NP_036500	O95371	OR2C1_HUMAN	olfactory receptor, family 2, subfamily C,	79	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GTTCAGTCCCCCAAATGCTGA	0.547		NA											56	44					0	0	0	0
SETD6	79918	broad.mit.edu	37	16	58552079	58552079	+	Missense_Mutation	SNP	A	A	G			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr16:58552079A>G	uc002ens.2	+	6	976	c.917A>G	c.(916-918)AAC>AGC	p.N306S	SETD6_uc002enr.2_Missense_Mutation_p.N282S|SETD6_uc010cdm.2_RNA	NM_001160305	NP_001153777	Q8TBK2	SETD6_HUMAN	SET domain containing 6 isoform a	306					negative regulation of NF-kappaB transcription factor activity|peptidyl-lysine monomethylation|regulation of inflammatory response	nucleus	NF-kappaB binding|protein-lysine N-methyltransferase activity			ovary(1)	1						TATCCTGACAACACAGATGAC	0.428		NA											17	49					0	0	0	0
HP	3240	broad.mit.edu	37	16	72094489	72094489	+	Silent	SNP	C	C	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr16:72094489C>T	uc002fbr.3	+	7	965	c.921C>T	c.(919-921)GAC>GAT	p.D307D	TXNL4B_uc010cgl.2_Intron|HP_uc010cgm.2_Silent_p.D248D|HP_uc002fbt.3_Silent_p.D248D|HP_uc002fbu.1_Silent_p.D45D|HP_uc002fbv.3_Silent_p.D218D|HP_uc002fbw.3_Silent_p.D129D|HP_uc002fbx.3_Silent_p.D129D|HPR_uc002fby.2_5'Flank	NM_005143	NP_005134	P00738	HPT_HUMAN	haptoglobin isoform 1 preproprotein	307	Peptidase S1.				cellular iron ion homeostasis|defense response|negative regulation of hydrogen peroxide catabolic process|negative regulation of oxidoreductase activity|positive regulation of cell death|proteolysis|response to hydrogen peroxide	extracellular region|haptoglobin-hemoglobin complex	hemoglobin binding|serine-type endopeptidase activity				0		Renal(780;9.67e-05)|Ovarian(137;0.00327)|Hepatocellular(780;0.114)		BRCA - Breast invasive adenocarcinoma(221;0.00015)|Kidney(780;0.000529)		CTGACCAAGACCAATGCATAA	0.493		NA											15	42					0	0	0	0
ZFHX3	463	broad.mit.edu	37	16	72821365	72821365	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr16:72821365C>T	uc002fck.2	-	10	11483	c.10810G>A	c.(10810-10812)GCC>ACC	p.A3604T	uc002fcj.1_Intron|ZFHX3_uc002fcl.2_Missense_Mutation_p.A2690T	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	3604					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				GAGGAGGGGGCGGCGGCCGAC	0.652		NA											9	35					0	0	0	0
MBTPS1	8720	broad.mit.edu	37	16	84088086	84088086	+	Missense_Mutation	SNP	G	G	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr16:84088086G>T	uc002fhi.2	-	23	3629	c.3127C>A	c.(3127-3129)CAG>AAG	p.Q1043K	MBTPS1_uc002fhh.2_Missense_Mutation_p.Q547K	NM_003791	NP_003782	Q14703	MBTP1_HUMAN	membrane-bound transcription factor site-1	1043	Arg/Lys/Pro-rich (basic).|Cytoplasmic (Potential).				cholesterol metabolic process|proteolysis	endoplasmic reticulum lumen|endoplasmic reticulum membrane|Golgi membrane|integral to membrane	serine-type endopeptidase activity			ovary(2)	2						GGGTGAACCTGCTGCATGAGC	0.642		NA											7	26					0.000274275	0.00103511	1	0
SMG6	23293	broad.mit.edu	37	17	2200598	2200598	+	Missense_Mutation	SNP	T	T	A	rs143802482		TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr17:2200598T>A	uc002fub.1	-	4	2145	c.2090A>T	c.(2089-2091)AAG>ATG	p.K697M		NM_017575	NP_060045	Q86US8	EST1A_HUMAN	Smg-6 homolog, nonsense mediated mRNA decay	697					mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of dephosphorylation|telomere maintenance	chromosome, telomeric region|cytosol|nucleolus|telomerase holoenzyme complex	endoribonuclease activity|metal ion binding|protein binding|telomeric DNA binding			central_nervous_system(2)|lung(1)|kidney(1)	4						CAGTTTGAACTTGTAAGTAAC	0.348		NA											34	93					0	0	0	0
GPR172B	55065	broad.mit.edu	37	17	4937188	4937188	+	Missense_Mutation	SNP	G	G	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr17:4937188G>T	uc002gap.3	-	3	1309	c.596C>A	c.(595-597)GCA>GAA	p.A199E	GPR172B_uc002gao.3_Missense_Mutation_p.A199E|GPR172B_uc010ckw.2_Missense_Mutation_p.A77E|GPR172B_uc010ckx.2_Missense_Mutation_p.A199E	NM_001104577	NP_001098047	Q9NWF4	RFT_HUMAN	G protein-coupled receptor 172B precursor	199	Helical; (Potential).					integral to plasma membrane	receptor activity|riboflavin transporter activity				0						GGCAGTCAGTGCCCAGAAGAA	0.637		NA											31	81					9.04e-19	4.12e-18	1	0
TP53	7157	broad.mit.edu	37	17	7577609	7577609	+	Splice_Site	SNP	C	C	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr17:7577609C>T	uc002gim.2	-	7	867	c.673_splice	c.e7-1	p.V225_splice	TP53_uc002gig.1_Splice_Site_p.V225_splice|TP53_uc002gih.2_Splice_Site_p.V225_splice|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Splice_Site_p.V93_splice|TP53_uc010cng.1_Splice_Site_p.V93_splice|TP53_uc002gii.1_Splice_Site_p.V93_splice|TP53_uc010cnh.1_Splice_Site_p.V225_splice|TP53_uc010cni.1_Splice_Site_p.V225_splice|TP53_uc002gij.2_Splice_Site_p.V225_splice|TP53_uc010cnj.1_Intron|TP53_uc002gin.2_Intron|TP53_uc002gio.2_Intron	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a						activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.?(12)|p.0?(7)|p.V225fs*24(1)|p.E224_V225insXX(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		CAGAGCCAACCTAGGAGATAA	0.488		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			17	49					0	0	0	0
TP53	7157	broad.mit.edu	37	17	7579575	7579575	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr17:7579575G>A	uc002gim.2	-	4	306	c.112C>T	c.(112-114)CAA>TAA	p.Q38*	TP53_uc002gig.1_Nonsense_Mutation_p.Q38*|TP53_uc002gih.2_Nonsense_Mutation_p.Q38*|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_5'Flank|TP53_uc010cng.1_5'Flank|TP53_uc002gii.1_5'Flank|TP53_uc010cnh.1_Nonsense_Mutation_p.Q38*|TP53_uc010cni.1_Nonsense_Mutation_p.Q38*|TP53_uc002gij.2_Nonsense_Mutation_p.Q38*|TP53_uc010cnj.1_5'Flank|TP53_uc002gin.2_Intron|TP53_uc002gio.2_Intron|TP53_uc010vug.1_5'UTR|TP53_uc010cnk.1_Nonsense_Mutation_p.Q53*	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	38	Transcription activation (acidic).|Interaction with HRMT1L2.				activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.0?(7)|p.Q38*(2)|p.?(1)|p.P13fs*18(1)|p.S33fs*23(1)|p.S37fs*79(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		TCCATTGCTTGGGACGGCAAG	0.418		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			51	180					0	0	0	0
MYH4	4622	broad.mit.edu	37	17	10362627	10362627	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr17:10362627C>T	uc002gmn.2	-	15	1639	c.1528G>A	c.(1528-1530)GAG>AAG	p.E510K	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	510	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						AACTCCCACTCGATGCCTTCC	0.473		NA											26	103					0	0	0	0
GGNBP2	79893	broad.mit.edu	37	17	34945780	34945780	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr17:34945780G>A	uc002hnb.2	+	14	2282	c.2033G>A	c.(2032-2034)CGG>CAG	p.R678Q	DHRS11_uc002hnd.2_5'Flank	NM_024835	NP_079111	Q9H3C7	GGNB2_HUMAN	zinc finger protein 403	678					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasmic membrane-bounded vesicle				ovary(2)	2		Breast(25;0.00957)|Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0193)		AAATACTGCCGGTTAAATGAT	0.373		NA											55	129					0	0	0	0
TADA2A	6871	broad.mit.edu	37	17	35800747	35800747	+	Silent	SNP	A	A	G			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr17:35800747A>G	uc002hnt.2	+	6	583	c.426A>G	c.(424-426)ACA>ACG	p.T142T	TADA2A_uc002hnu.1_Silent_p.T142T|TADA2A_uc002hnv.2_Silent_p.T142T|TADA2A_uc010wdd.1_Silent_p.T142T|TADA2A_uc002hnw.2_Silent_p.T41T|TADA2A_uc010cvb.2_5'UTR	NM_001488	NP_001479	O75478	TAD2A_HUMAN	transcriptional adaptor 2A isoform a	142					histone H3 acetylation|transcription from RNA polymerase II promoter	chromosome|PCAF complex	DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity|zinc ion binding			breast(3)|skin(1)	4						CTGCTGACACAGCCATTCCAT	0.423		NA											5	37					0	0	0	0
STARD3	10948	broad.mit.edu	37	17	37817129	37817129	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr17:37817129G>A	uc002hsd.2	+	12	1145	c.1021G>A	c.(1021-1023)GTG>ATG	p.V341M	STARD3_uc010weh.1_RNA|STARD3_uc002hse.2_Missense_Mutation_p.V323M|STARD3_uc010wei.1_Missense_Mutation_p.V341M|STARD3_uc002hsf.2_Missense_Mutation_p.V207M|STARD3_uc002hsg.2_Missense_Mutation_p.V174M	NM_006804	NP_006795	Q14849	STAR3_HUMAN	StAR-related lipid transfer (START) domain	341	START.|Cytoplasmic (Potential).				cholesterol metabolic process|mitochondrial transport|steroid biosynthetic process	integral to membrane|late endosome membrane	cholesterol binding|cholesterol transporter activity				0	Lung NSC(9;1.15e-09)|all_lung(9;6.24e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|BRCA - Breast invasive adenocarcinoma(8;1.04e-44)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			TGCGGGCGGCGTGGTCTCCCC	0.607		NA											40	95					0	0	0	0
BPTF	2186	broad.mit.edu	37	17	65914934	65914934	+	Missense_Mutation	SNP	G	G	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr17:65914934G>T	uc002jgf.2	+	12	5469	c.5408G>T	c.(5407-5409)GGA>GTA	p.G1803V	BPTF_uc002jge.2_Missense_Mutation_p.G1929V	NM_182641	NP_872579	Q12830	BPTF_HUMAN	bromodomain PHD finger transcription factor	1929					brain development|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NURF complex	sequence-specific DNA binding|transcription factor binding|zinc ion binding			ovary(2)|skin(2)	4	all_cancers(12;6e-11)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0984)|LUSC - Lung squamous cell carcinoma(166;0.24)			GCTCCTCCAGGAGGAGGGACT	0.398		NA											33	73					8.17e-17	3.7e-16	1	0
THOP1	7064	broad.mit.edu	37	19	2810358	2810358	+	Silent	SNP	G	G	A			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr19:2810358G>A	uc002lwj.2	+	10	1667	c.1512G>A	c.(1510-1512)CCG>CCA	p.P504P	THOP1_uc010xgz.1_Silent_p.P383P|THOP1_uc002lwk.2_Silent_p.P15P	NM_003249	NP_003240	P52888	THOP1_HUMAN	thimet oligopeptidase 1	504					proteolysis	cytoplasm	metal ion binding|metalloendopeptidase activity|protein binding			ovary(2)|central_nervous_system(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TGGAGGCGCCGTCGCAGATGC	0.682		NA											17	25					0	0	0	0
MUC16	94025	broad.mit.edu	37	19	9048464	9048464	+	Missense_Mutation	SNP	C	C	A			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr19:9048464C>A	uc002mkp.2	-	5	33371	c.33167G>T	c.(33166-33168)AGT>ATT	p.S11056I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11058	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGTTGGAATACTTGTACTGTT	0.498		NA											30	118					7.26e-15	3.2e-14	1	0
ZNF791	163049	broad.mit.edu	37	19	12734543	12734543	+	Silent	SNP	G	G	C			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr19:12734543G>C	uc002mua.2	+	2	195	c.33G>C	c.(31-33)GTG>GTC	p.V11V	ZNF791_uc010xml.1_5'UTR|ZNF791_uc010dyu.1_5'UTR|ZNF791_uc010xmm.1_Intron	NM_153358	NP_699189	Q3KP31	ZN791_HUMAN	zinc finger protein 791	11	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						ATGTGTCTGTGAGCTTCAGCC	0.443		NA											4	132					0	0	0	0
TNPO2	30000	broad.mit.edu	37	19	12822400	12822400	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr19:12822400C>T	uc002muo.2	-	10	1103	c.918G>A	c.(916-918)ATG>ATA	p.M306I	TNPO2_uc002mup.2_Missense_Mutation_p.M398I|TNPO2_uc002muq.2_Missense_Mutation_p.M306I|TNPO2_uc002mur.2_Missense_Mutation_p.M306I	NM_001136196	NP_001129668	O14787	TNPO2_HUMAN	transportin 2 (importin 3, karyopherin beta 2b)	306	HEAT 5.				intracellular protein transport	cytoplasm|nucleus	nuclear localization sequence binding|protein binding|protein transporter activity			ovary(1)	1						CCGAGTACTTCATCCCATTCA	0.592		NA											7	25					0	0	0	0
ZNF790	388536	broad.mit.edu	37	19	37309438	37309438	+	Missense_Mutation	SNP	T	T	A			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr19:37309438T>A	uc002oew.2	-	5	1927	c.1808A>T	c.(1807-1809)AAC>ATC	p.N603I	uc002oev.1_Intron	NM_206894	NP_996777	Q6PG37	ZN790_HUMAN	zinc finger protein 790	603					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|skin(1)	2	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.0454)|Colorectal(19;0.065)			TTGAGCAAAGTTTGACTCATG	0.323		NA											34	94					0	0	0	0
GRIN2D	2906	broad.mit.edu	37	19	48945466	48945466	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr19:48945466G>A	uc002pjc.3	+	12	2588	c.2500G>A	c.(2500-2502)GAG>AAG	p.E834K	GRIN2D_uc010elx.2_Missense_Mutation_p.E69K	NM_000836	NP_000827	O15399	NMDE4_HUMAN	N-methyl-D-aspartate receptor subunit 2D	834	Extracellular (Potential).					cell junction|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|protein binding			ovary(3)|breast(3)	6		all_epithelial(76;1.11e-06)|all_lung(116;5.79e-06)|Lung NSC(112;1.18e-05)|all_neural(266;0.0189)|Ovarian(192;0.0261)|Breast(70;0.203)		all cancers(93;0.00014)|OV - Ovarian serous cystadenocarcinoma(262;0.000233)|Epithelial(262;0.0112)|GBM - Glioblastoma multiforme(486;0.0161)	L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Orphenadrine(DB01173)	TGACAAAATCGAGGTGATGAG	0.577		NA											49	124					0	0	0	0
ZBTB45	84878	broad.mit.edu	37	19	59028060	59028060	+	Silent	SNP	C	C	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr19:59028060C>T	uc002qtd.2	-	2	1273	c.981G>A	c.(979-981)CCG>CCA	p.P327P	ZBTB45_uc002qte.2_Silent_p.P327P|ZBTB45_uc002qtf.2_Silent_p.P327P	NM_032792	NP_116181	Q96K62	ZBT45_HUMAN	zinc finger and BTB domain containing 45	327	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(17;1.81e-17)|all_epithelial(17;1.21e-12)|Lung NSC(17;2.8e-05)|all_lung(17;0.000139)|Colorectal(82;0.000147)|Renal(17;0.00528)|all_neural(62;0.0133)|Ovarian(87;0.156)|Medulloblastoma(540;0.232)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0165)|Lung(386;0.18)		GTGCAACGGGCGGCCCTGGGG	0.692		NA											12	20					0	0	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107459965	107459965	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr2:107459965C>T	uc002tdq.2	-	2	588	c.469G>A	c.(469-471)GGC>AGC	p.G157S	ST6GAL2_uc002tdr.2_Missense_Mutation_p.G157S|ST6GAL2_uc002tds.3_Missense_Mutation_p.G157S	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	157	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						TCCCGTGGGCCTGGCTCCCCG	0.632		NA											52	129					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179616392	179616392	+	Missense_Mutation	SNP	T	T	C			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr2:179616392T>C	uc002unb.2	-	46	10959	c.10735A>G	c.(10735-10737)AGG>GGG	p.R3579G	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCTAGTAACCTATAACTTCCA	0.373		NA											3	129					0	0	0	0
PARD3B	117583	broad.mit.edu	37	2	206265816	206265816	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr2:206265816G>C	uc002var.1	+	19	2917	c.2710G>C	c.(2710-2712)GAG>CAG	p.E904Q	PARD3B_uc002vao.1_Missense_Mutation_p.E904Q|PARD3B_uc002vap.1_Missense_Mutation_p.E842Q|PARD3B_uc002vaq.1_Missense_Mutation_p.E835Q	NM_152526	NP_689739	Q8TEW8	PAR3L_HUMAN	par-3 partitioning defective 3 homolog B isoform	904					cell cycle|cell division	endomembrane system|tight junction				skin(2)|ovary(1)|breast(1)	4		all_cancers(1;2.88e-06)|all_epithelial(1;3.23e-06)		Epithelial(149;0.0739)		GAGAGAAGAAGAGCTGGAGAA	0.428		NA											3	13					0	0	0	0
MAP2	4133	broad.mit.edu	37	2	210518097	210518097	+	Nonsense_Mutation	SNP	C	C	G			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr2:210518097C>G	uc002vde.1	+	4	451	c.203C>G	c.(202-204)TCA>TGA	p.S68*	MAP2_uc002vdc.1_Nonsense_Mutation_p.S68*|MAP2_uc002vdd.1_Nonsense_Mutation_p.S68*|MAP2_uc002vdf.1_Nonsense_Mutation_p.S68*|MAP2_uc002vdg.1_Nonsense_Mutation_p.S68*|MAP2_uc002vdh.1_Nonsense_Mutation_p.S68*|MAP2_uc002vdi.1_Nonsense_Mutation_p.S68*	NM_002374	NP_002365	P11137	MAP2_HUMAN	microtubule-associated protein 2 isoform 1	68					central nervous system neuron development|dendrite morphogenesis|negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	beta-dystroglycan binding|calmodulin binding|structural molecule activity			ovary(9)|upper_aerodigestive_tract(2)|large_intestine(2)|pancreas(2)|central_nervous_system(1)|skin(1)	17		Hepatocellular(293;0.137)|Lung NSC(271;0.163)|Renal(323;0.202)		UCEC - Uterine corpus endometrioid carcinoma (47;6.64e-05)|Epithelial(149;3.12e-100)|all cancers(144;6.88e-91)|Lung(261;0.0624)|LUSC - Lung squamous cell carcinoma(261;0.0662)|STAD - Stomach adenocarcinoma(1183;0.18)	Estramustine(DB01196)	GGCACCTATTCAAATACCAAA	0.532		NA											23	52					0	0	0	0
ITPA	3704	broad.mit.edu	37	20	3193868	3193868	+	Missense_Mutation	SNP	T	T	G			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr20:3193868T>G	uc002wid.2	+	2	262	c.120T>G	c.(118-120)ATT>ATG	p.I40M	ITPA_uc002wie.2_Missense_Mutation_p.I23M|ITPA_uc002wif.2_Intron	NM_033453	NP_258412	Q9BY32	ITPA_HUMAN	inosine triphosphatase isoform a	40					nucleotide metabolic process	cytoplasm	metal ion binding|nucleoside-triphosphate diphosphatase activity|nucleotide binding			ovary(1)	1						CACAGAAAATTGACCGTATGT	0.403		NA											25	51					0	0	0	0
SLC32A1	140679	broad.mit.edu	37	20	37357005	37357005	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr20:37357005C>T	uc002xjc.2	+	2	1564	c.1301C>T	c.(1300-1302)ACG>ATG	p.T434M		NM_080552	NP_542119	Q9H598	VIAAT_HUMAN	solute carrier family 32, member 1	434	Lumenal, vesicle (Potential).				neurotransmitter secretion	clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|integral to membrane|plasma membrane|synaptic vesicle membrane	vesicular hydrogen:amino acid antiporter activity				0		Myeloproliferative disorder(115;0.00878)			Glycine(DB00145)	TGGGGGCTGACGCTGCGCTGC	0.682		NA											14	41					0	0	0	0
INPP5J	27124	broad.mit.edu	37	22	31520883	31520883	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr22:31520883C>T	uc003aju.3	+	2	250	c.158C>T	c.(157-159)TCG>TTG	p.S53L	INPP5J_uc010gwf.2_Missense_Mutation_p.S53L|INPP5J_uc003ajv.3_5'UTR|INPP5J_uc003ajs.3_5'UTR|INPP5J_uc011alk.1_5'UTR|INPP5J_uc010gwg.2_Intron|INPP5J_uc003ajw.2_Intron|INPP5J_uc003ajt.3_Missense_Mutation_p.S53L|INPP5J_uc003ajx.2_5'Flank|INPP5J_uc003ajy.2_5'Flank|INPP5J_uc003ajz.2_5'Flank	NM_001002837	NP_001002837	Q15735	PI5PA_HUMAN	phosphatidylinositol (4,5) bisphosphate	53						cytoplasm|ruffle	inositol 1,3,4,5-tetrakisphosphate 5-phosphatase activity|inositol-1,4,5-trisphosphate 5-phosphatase activity|inositol-polyphosphate 5-phosphatase activity|SH3 domain binding			skin(1)	1						CTAGGACCCTCGGAACCAAGG	0.572		NA											11	34					0	0	0	0
EIF3L	51386	broad.mit.edu	37	22	38258977	38258977	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr22:38258977G>A	uc003auf.2	+	6	524	c.437G>A	c.(436-438)GGG>GAG	p.G146E	EIF3L_uc003aue.1_Missense_Mutation_p.G146E|EIF3L_uc011ann.1_Intron|EIF3L_uc003aug.2_Missense_Mutation_p.G38E	NM_016091	NP_057175	Q9Y262	EIF3L_HUMAN	eukaryotic translation initiation factor 3	146						eukaryotic translation initiation factor 3 complex	protein binding|translation initiation factor activity			ovary(1)	1						TCTTTACAGGGGGGACCTTCC	0.383		NA											19	48					0	0	0	0
TATDN2	9797	broad.mit.edu	37	3	10291089	10291089	+	Missense_Mutation	SNP	T	T	G			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr3:10291089T>G	uc003bvg.2	+	2	786	c.205T>G	c.(205-207)TTA>GTA	p.L69V	TATDN2_uc003bvf.2_Missense_Mutation_p.L69V|TATDN2_uc011atr.1_Missense_Mutation_p.L69V|TATDN2_uc011ats.1_RNA|TATDN2_uc011att.1_RNA	NM_014760	NP_055575	Q93075	TATD2_HUMAN	TatD DNase domain containing 2	69						nucleus	endodeoxyribonuclease activity, producing 5'-phosphomonoesters|metal ion binding			pancreas(2)	2						CTCGCGGAGGTTATCCTGGGG	0.652		NA											7	104					0	0	0	0
DNAJC13	23317	broad.mit.edu	37	3	132166224	132166224	+	Silent	SNP	C	C	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr3:132166224C>T	uc003eor.2	+	4	269	c.204C>T	c.(202-204)TTC>TTT	p.F68F	DNAJC13_uc010htq.1_Silent_p.F68F	NM_015268	NP_056083	O75165	DJC13_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 13	68							heat shock protein binding			ovary(1)|breast(1)	2						GAACGGAGTTCAACCTCACAT	0.368		NA											13	69					0	0	0	0
GFM1	85476	broad.mit.edu	37	3	158363475	158363475	+	Nonsense_Mutation	SNP	C	C	T	rs119470019		TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr3:158363475C>T	uc003fce.2	+	2	246	c.139C>T	c.(139-141)CGA>TGA	p.R47*	GFM1_uc003fcd.2_Nonsense_Mutation_p.R47*|GFM1_uc003fcf.2_RNA|GFM1_uc003fcg.2_5'Flank	NM_024996	NP_079272	Q96RP9	EFGM_HUMAN	G elongation factor, mitochondrial 1 precursor	47					mitochondrial translational elongation	mitochondrion	GTP binding|GTPase activity|translation elongation factor activity			ovary(3)|central_nervous_system(1)	4			Lung(72;0.00309)|LUSC - Lung squamous cell carcinoma(72;0.0043)			TGAAAAAATACGAAATATTGG	0.383		NA											27	53					0	0	0	0
SERPINI2	5276	broad.mit.edu	37	3	167183380	167183380	+	Missense_Mutation	SNP	C	C	A			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr3:167183380C>A	uc003fer.1	-	3	618	c.560G>T	c.(559-561)GGA>GTA	p.G187V	SERPINI2_uc003fes.1_Missense_Mutation_p.G197V|SERPINI2_uc003fet.1_Missense_Mutation_p.G187V	NM_006217	NP_006208	O75830	SPI2_HUMAN	serpin peptidase inhibitor, clade I (pancpin),	187					cellular component movement|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(2)|urinary_tract(1)	3						TTTCCAATCTCCTTTGAAATA	0.388		NA											15	35					3.27e-08	1.34e-07	1	0
SERPINI2	5276	broad.mit.edu	37	3	167183382	167183382	+	Silent	SNP	T	T	C			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr3:167183382T>C	uc003fer.1	-	3	616	c.558A>G	c.(556-558)AAA>AAG	p.K186K	SERPINI2_uc003fes.1_Silent_p.K196K|SERPINI2_uc003fet.1_Silent_p.K186K	NM_006217	NP_006208	O75830	SPI2_HUMAN	serpin peptidase inhibitor, clade I (pancpin),	186					cellular component movement|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(2)|urinary_tract(1)	3						TCCAATCTCCTTTGAAATAAA	0.393		NA											16	34					0	0	0	0
MECOM	2122	broad.mit.edu	37	3	168838947	168838947	+	Silent	SNP	G	G	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr3:168838947G>T	uc003ffi.3	-	6	734	c.465C>A	c.(463-465)GTC>GTA	p.V155V	MECOM_uc010hwk.1_Silent_p.V178V|MECOM_uc003ffj.3_Silent_p.V220V|MECOM_uc011bpi.1_Silent_p.V156V|MECOM_uc003ffn.3_Silent_p.V155V|MECOM_uc003ffk.2_Silent_p.V155V|MECOM_uc003ffl.2_Silent_p.V315V|MECOM_uc011bpj.1_Silent_p.V343V|MECOM_uc011bpk.1_Silent_p.V145V|MECOM_uc010hwn.2_Silent_p.V343V	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	155	Interaction with MAPK9, SMAD3 and probably SUV39H1.				apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						CCCGGGCACCGACATGCTGAG	0.522		NA											16	42					9.17e-09	3.8e-08	1	0
CHRD	8646	broad.mit.edu	37	3	184104380	184104380	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr3:184104380C>T	uc003fov.2	+	16	2279	c.2033C>T	c.(2032-2034)GCG>GTG	p.A678V	CHRD_uc003fow.2_Missense_Mutation_p.A308V|CHRD_uc003fox.2_Missense_Mutation_p.A678V|CHRD_uc003foy.2_Missense_Mutation_p.A308V|CHRD_uc010hyc.2_Missense_Mutation_p.A268V|CHRD_uc011brr.1_Intron	NM_003741	NP_003732	Q9H2X0	CHRD_HUMAN	chordin precursor	678					BMP signaling pathway involved in spinal cord dorsal/ventral patterning|floor plate development|negative regulation of BMP signaling pathway|negative regulation of cell migration|positive regulation of cell adhesion|skeletal system development	extracellular space	cytokine binding			skin(2)|ovary(1)	3	all_cancers(143;6.33e-11)|Ovarian(172;0.0339)		Epithelial(37;4.96e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			GCCTCTGCTGCGCCGCCTGTG	0.711		NA											5	17					0	0	0	0
NCBP2	22916	broad.mit.edu	37	3	196664503	196664503	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr3:196664503C>G	uc003fxd.1	-	3	367	c.277G>C	c.(277-279)GAT>CAT	p.D93H	NCBP2_uc003fxb.1_Missense_Mutation_p.D23H|NCBP2_uc011btz.1_Missense_Mutation_p.D75H|NCBP2_uc003fxc.1_RNA|NCBP2_uc003fxe.1_Splice_Site_p.Y40_splice|NCBP2_uc003fxf.2_3'UTR	NM_007362	NP_031388	P52298	NCBP2_HUMAN	nuclear cap binding protein subunit 2, 20kDa	93	RRM.				gene silencing by RNA|histone mRNA metabolic process|mRNA 3'-end processing|mRNA capping|mRNA export from nucleus|ncRNA metabolic process|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|positive regulation of RNA export from nucleus|positive regulation of viral transcription|regulation of translational initiation|snRNA export from nucleus|spliceosomal snRNP assembly|termination of RNA polymerase II transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	cytosol|mRNA cap binding complex|nucleoplasm	nucleotide binding|protein binding|RNA 7-methylguanosine cap binding				0	all_cancers(143;1.8e-08)|Ovarian(172;0.0634)|Breast(254;0.135)		Epithelial(36;3.42e-24)|all cancers(36;2.27e-22)|OV - Ovarian serous cystadenocarcinoma(49;4.13e-19)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00551)		TTTTCCGCATCTGCGCGTGAG	0.448		NA											21	77					0	0	0	0
MFSD10	10227	broad.mit.edu	37	4	2934445	2934445	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr4:2934445C>T	uc003gfw.2	-	4	727	c.413G>A	c.(412-414)CGG>CAG	p.R138Q	MFSD10_uc003gfv.2_5'Flank|MFSD10_uc003gfx.2_Intron|MFSD10_uc003gfz.2_Missense_Mutation_p.R138Q|MFSD10_uc003gfy.2_RNA|MFSD10_uc003gga.2_Missense_Mutation_p.R138Q|MFSD10_uc003ggb.1_Missense_Mutation_p.R138Q|MFSD10_uc003ggc.2_Missense_Mutation_p.R138Q|C4orf10_uc003ggd.1_5'Flank|C4orf10_uc003gge.1_5'Flank|C4orf10_uc003ggg.1_5'Flank|C4orf10_uc003ggh.2_5'Flank	NM_001120	NP_001111	Q14728	MFS10_HUMAN	major facilitator superfamily domain containing	138					apoptosis	integral to membrane	tetracycline transporter activity				0				UCEC - Uterine corpus endometrioid carcinoma (64;0.163)		CGCAAAGCTCCGAGAGGTGGC	0.652		NA											15	64					0	0	0	0
ATP8A1	10396	broad.mit.edu	37	4	42445599	42445599	+	Missense_Mutation	SNP	G	G	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr4:42445599G>T	uc003gwr.2	-	33	3338	c.3106C>A	c.(3106-3108)CCT>ACT	p.P1036T	ATP8A1_uc003gwq.2_Missense_Mutation_p.P262T|ATP8A1_uc003gws.2_Missense_Mutation_p.P1021T	NM_006095	NP_006086	Q9Y2Q0	AT8A1_HUMAN	ATPase, aminophospholipid transporter (APLT),	1036	Extracellular (Potential).				ATP biosynthetic process	chromaffin granule membrane|integral to membrane|plasma membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			skin(2)|central_nervous_system(1)	3					Phosphatidylserine(DB00144)	GACATATCAGGGGCCATCGGA	0.433		NA											11	28					4.37e-10	1.84e-09	1	0
CORIN	10699	broad.mit.edu	37	4	47605597	47605597	+	Missense_Mutation	SNP	T	T	C			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr4:47605597T>C	uc003gxm.2	-	20	2722	c.2629A>G	c.(2629-2631)ACC>GCC	p.T877A	CORIN_uc011bzf.1_Missense_Mutation_p.T738A|CORIN_uc011bzg.1_Missense_Mutation_p.T810A	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	877	Extracellular (Potential).|Peptidase S1.				peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						AGGATGATGGTCTTCACAAAG	0.488		NA											3	50					0	0	0	0
ADCY2	108	broad.mit.edu	37	5	7396480	7396480	+	Missense_Mutation	SNP	A	A	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr5:7396480A>T	uc003jdz.1	+	1	138	c.71A>T	c.(70-72)GAC>GTC	p.D24V		NM_020546	NP_065433	Q08462	ADCY2_HUMAN	adenylate cyclase 2	24	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|dendrite|integral to membrane|plasma membrane	ATP binding|metal ion binding			ovary(5)|pancreas(1)|skin(1)	7						GGCGGCGGAGACGGGCTGCCG	0.652		NA											16	22					0	0	0	0
CDH12	1010	broad.mit.edu	37	5	21752115	21752115	+	Missense_Mutation	SNP	G	G	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr5:21752115G>T	uc010iuc.2	-	12	2574	c.2116C>A	c.(2116-2118)CCC>ACC	p.P706T	CDH12_uc011cno.1_Missense_Mutation_p.P666T|CDH12_uc003jgk.2_Missense_Mutation_p.P706T|uc003jgj.2_Intron	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	706	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						TCTTCCATGGGTGGTCTCTGA	0.448		NA								HNSCC(59;0.17)			23	92					1.64e-13	7.18e-13	1	0
ADAMTS12	81792	broad.mit.edu	37	5	33576387	33576387	+	Silent	SNP	C	C	A			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr5:33576387C>A	uc003jia.1	-	19	3907	c.3744G>T	c.(3742-3744)CTG>CTT	p.L1248L	ADAMTS12_uc010iuq.1_Silent_p.L1163L	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1248	Spacer 2.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						CCAGAGGGAGCAGAGTGTTGG	0.522		NA								HNSCC(64;0.19)			56	177					1.46e-29	6.77e-29	1	0
UGT3A2	167127	broad.mit.edu	37	5	36066838	36066838	+	Silent	SNP	C	C	A			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr5:36066838C>A	uc003jjz.1	-	1	147	c.54G>T	c.(52-54)CTG>CTT	p.L18L	UGT3A2_uc011cos.1_Silent_p.L18L|UGT3A2_uc011cot.1_5'UTR	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	18						integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			CCTCTGAGAGCAGGACCCCAG	0.607		NA											97	131					3.58e-33	1.66e-32	1	0
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139781714	139781714	+	Silent	SNP	G	G	A			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr5:139781714G>A	uc003lfs.1	+	1	286	c.162G>A	c.(160-162)TCG>TCA	p.S54S	ANKHD1_uc003lfq.1_Silent_p.S54S|ANKHD1_uc003lfr.2_Silent_p.S54S|uc003lfn.2_5'Flank|ANKHD1_uc003lfp.2_Silent_p.S54S|ANKHD1_uc003lfo.2_Silent_p.S54S|ANKHD1_uc010jfk.2_Silent_p.S54S	NM_020690	NP_065741	Q8IWZ2	Q8IWZ2_HUMAN	ANKHD1-EIF4EBP3 protein	54						cytoplasm|nucleus	RNA binding			ovary(6)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGCCAGCGTCGGGAGTcggca	0.622		NA											16	9					0	0	0	0
PCDHGB6	56100	broad.mit.edu	37	5	140789785	140789785	+	Silent	SNP	G	G	A			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr5:140789785G>A	uc003lkj.1	+	1	2016	c.2016G>A	c.(2014-2016)CTG>CTA	p.L672L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lki.1_Silent_p.L672L|PCDHGA10_uc011day.1_5'Flank|PCDHGA10_uc003lkl.1_5'Flank	NM_018926	NP_061749	Q9Y5F9	PCDGI_HUMAN	protocadherin gamma subfamily B, 6 isoform 1	672	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAGAGATACTGCCAGACCTCA	0.607		NA											66	54					0	0	0	0
NR3C1	2908	broad.mit.edu	37	5	142675046	142675046	+	Missense_Mutation	SNP	T	T	G			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr5:142675046T>G	uc003lmz.2	-	7	2494	c.2002A>C	c.(2002-2004)ACC>CCC	p.T668P	NR3C1_uc003lmy.2_Missense_Mutation_p.T669P|NR3C1_uc003lna.2_Missense_Mutation_p.T668P|NR3C1_uc003lnb.2_Missense_Mutation_p.T668P|NR3C1_uc011dbk.1_Missense_Mutation_p.T271P|NR3C1_uc003lnc.2_Missense_Mutation_p.T668P|NR3C1_uc003lnd.2_Missense_Mutation_p.T668P|NR3C1_uc003lne.2_Missense_Mutation_p.T668P|NR3C1_uc003lnf.2_Missense_Mutation_p.T669P	NM_000176	NP_000167	P04150	GCR_HUMAN	glucocorticoid receptor isoform alpha	668	Steroid-binding.				chromatin modification|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to protein stimulus|transcription from RNA polymerase II promoter	mitochondrial matrix|nucleoplasm	glucocorticoid receptor activity|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|zinc ion binding			ovary(2)	2		Acute lymphoblastic leukemia(2;3.2e-05)|all_hematologic(2;0.000361)	KIRC - Kidney renal clear cell carcinoma(527;0.00111)|Kidney(363;0.00176)		Amcinonide(DB00288)|Betamethasone(DB00443)|Budesonide(DB01222)|Dexamethasone(DB01234)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluticasone Propionate(DB00588)|Hydrocortamate(DB00769)|Hydrocortisone(DB00741)|Loteprednol Etabonate(DB00873)|Methylprednisolone(DB00959)|Mifepristone(DB00834)|Mometasone(DB00764)|Prednisone(DB00635)	AGCAGTAAGGTTTTCATACAG	0.378		NA											9	38					0	0	0	0
FAT2	2196	broad.mit.edu	37	5	150929062	150929062	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr5:150929062C>T	uc003lue.3	-	8	4596	c.4583G>A	c.(4582-4584)CGA>CAA	p.R1528Q	GM2A_uc011dcs.1_Intron	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	1528	Extracellular (Potential).|Cadherin 13.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TTCCTGGTCTCGGACCTATGG	0.483		NA											26	12					0	0	0	0
WWC1	23286	broad.mit.edu	37	5	167850580	167850580	+	Silent	SNP	C	C	G			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr5:167850580C>G	uc003lzu.2	+	11	1410	c.1317C>G	c.(1315-1317)CCC>CCG	p.P439P	WWC1_uc003lzv.2_Silent_p.P439P|WWC1_uc011den.1_Silent_p.P439P|WWC1_uc003lzw.2_Silent_p.P238P	NM_015238	NP_056053	Q8IX03	KIBRA_HUMAN	WW and C2 domain containing 1 isoform 3	439					cell migration|positive regulation of MAPKKK cascade|regulation of hippo signaling cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perinuclear region of cytoplasm|ruffle membrane	protein binding|transcription coactivator activity			ovary(2)|skin(2)|breast(1)	5	Renal(175;0.000212)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0399)|all_neural(177;0.0577)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0364)|Epithelial(171;0.0765)|OV - Ovarian serous cystadenocarcinoma(192;0.0918)		GCAGCAGCCCCGGATCCCTCA	0.617		NA											32	111					0	0	0	0
LSM2	57819	broad.mit.edu	37	6	31765655	31765655	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr6:31765655G>A	uc003nxg.2	-	5	376	c.167C>T	c.(166-168)TCA>TTA	p.S56L	VARS_uc003nxe.2_5'Flank|VARS_uc011doi.1_5'Flank	NM_021177	NP_067000	Q9Y333	LSM2_HUMAN	LSM2 homolog, U6 small nuclear RNA associated	56					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|cytosol|nucleoplasm	U6 snRNA binding				0						GTTCTTCACTGATAACTAGAC	0.493		NA											47	154					0	0	0	0
DNAH8	1769	broad.mit.edu	37	6	38843598	38843598	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr6:38843598G>A	uc003ooe.1	+	51	7801	c.7201G>A	c.(7201-7203)GAT>AAT	p.D2401N		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TTATGTTACTGATTATGGTAA	0.328		NA											10	16					0	0	0	0
ZNF451	26036	broad.mit.edu	37	6	56993596	56993596	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr6:56993596G>A	uc003pdm.1	+	5	606	c.382G>A	c.(382-384)GAA>AAA	p.E128K	ZNF451_uc003pdl.2_Missense_Mutation_p.E128K|ZNF451_uc003pdn.1_Missense_Mutation_p.E128K|uc003pdq.1_Intron|ZNF451_uc003pdk.1_Missense_Mutation_p.E128K	NM_001031623	NP_001026794	Q9Y4E5	ZN451_HUMAN	zinc finger protein 451 isoform 1	128					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|pancreas(1)	2	Lung NSC(77;0.145)		LUSC - Lung squamous cell carcinoma(124;0.0785)|Lung(124;0.13)			TTCTGATACAGAAGCAGCAAG	0.373		NA											24	48					0	0	0	0
SGK1	6446	broad.mit.edu	37	6	134495871	134495871	+	Silent	SNP	G	G	A			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr6:134495871G>A	uc003qen.3	-	1	164	c.75C>T	c.(73-75)ATC>ATT	p.I25I	SGK1_uc003qeo.3_Intron|SGK1_uc011ect.1_5'UTR|SGK1_uc011ecu.1_Silent_p.I25I|SGK1_uc011ecv.1_Intron|SGK1_uc011ecw.1_Intron	NM_005627	NP_005618	O00141	SGK1_HUMAN	serum/glucocorticoid regulated kinase 1 isoform	25	Necessary for localization to the cytoplasm.				apoptosis|response to stress|sodium ion transport	endoplasmic reticulum|nucleus|plasma membrane	ATP binding|protein binding|protein serine/threonine kinase activity			skin(3)|stomach(1)|lung(1)|central_nervous_system(1)	6	Colorectal(23;0.221)			OV - Ovarian serous cystadenocarcinoma(155;0.00317)|GBM - Glioblastoma multiforme(68;0.00847)		TGCACTCACCGATGAGAATTG	0.542		NA									OREG0017675	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	35	113					0	0	0	0
TARP	445347	broad.mit.edu	37	7	38357071	38357071	+	Nonsense_Mutation	SNP	G	G	C			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr7:38357071G>C	uc003tge.1	-	2	400	c.23C>G	c.(22-24)TCA>TGA	p.S8*	uc003tfz.1_5'Flank|TARP_uc003tgf.1_5'Flank|TARP_uc003tgj.1_5'Flank|TARP_uc003tgh.1_5'Flank|TARP_uc003tgi.1_5'Flank|TARP_uc003tgg.1_5'Flank			A2JGV3	A2JGV3_HUMAN	Homo sapiens TCRgamma alternate reading frame protein (TCRg) mRNA, complete cds.	Error:Variant_position_missing_in_A2JGV3_after_alignment											0						TGCCAGCGTTGATGTGTGGAG	0.468		NA											4	12					0	0	0	0
BAZ1B	9031	broad.mit.edu	37	7	72884760	72884760	+	Missense_Mutation	SNP	C	C	A			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr7:72884760C>A	uc003tyc.2	-	8	2992	c.2647G>T	c.(2647-2649)GCT>TCT	p.A883S		NM_032408	NP_115784	Q9UIG0	BAZ1B_HUMAN	bromodomain adjacent to zinc finger domain, 1B	883	Potential.				ATP-dependent chromatin remodeling|chromatin-mediated maintenance of transcription|DNA replication-dependent nucleosome disassembly|double-strand break repair|heart morphogenesis|transcription, DNA-dependent	WINAC complex	ATP binding|chromatin binding|histone acetyl-lysine binding|histone kinase activity|non-membrane spanning protein tyrosine kinase activity|protein complex scaffold|vitamin D receptor activator activity|vitamin D receptor binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	7		Lung NSC(55;0.0659)|all_lung(88;0.152)				GCTTTCTCAGCAGCTGCTTTG	0.428		NA											34	55					3.11e-16	1.41e-15	1	0
TAS2R38	5726	broad.mit.edu	37	7	141673457	141673457	+	Silent	SNP	G	G	C			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr7:141673457G>C	uc003vwx.1	-	1	117	c.33C>G	c.(31-33)TCC>TCG	p.S11S		NM_176817	NP_789787	P59533	T2R38_HUMAN	taste receptor, type 2, member 38	11	Extracellular (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			kidney(1)|skin(1)	2	Melanoma(164;0.0171)					TGACTTCATAGGACACAGTGC	0.433		NA											19	68					0	0	0	0
ARHGEF5	7984	broad.mit.edu	37	7	144075958	144075958	+	Missense_Mutation	SNP	C	C	A			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr7:144075958C>A	uc003wel.2	+	14	4753	c.4635C>A	c.(4633-4635)GAC>GAA	p.D1545E	ARHGEF5_uc003wem.2_Missense_Mutation_p.D346E	NM_005435	NP_005426	Q12774	ARHG5_HUMAN	rho guanine nucleotide exchange factor 5	1545	SH3.				intracellular signal transduction|regulation of Rho protein signal transduction	intracellular	GTP binding|protein binding|Rho guanyl-nucleotide exchange factor activity			skin(2)	2	Melanoma(164;0.14)					AGAGCAGTGACGGTAAGCGGG	0.493		NA											35	96					6.85e-11	2.91e-10	1	0
NOS3	4846	broad.mit.edu	37	7	150693876	150693876	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr7:150693876C>T	uc003wif.2	+	5	741	c.445C>T	c.(445-447)CGG>TGG	p.R149W	NOS3_uc011kuy.1_Intron|NOS3_uc011kuz.1_Missense_Mutation_p.R149W|NOS3_uc011kva.1_Missense_Mutation_p.R149W|NOS3_uc011kvb.1_Missense_Mutation_p.R149W	NM_000603	NP_000594	P29474	NOS3_HUMAN	nitric oxide synthase 3 isoform 1	149	Interaction with NOSIP.				anti-apoptosis|arginine catabolic process|blood vessel remodeling|endothelial cell migration|mitochondrion organization|negative regulation of muscle hyperplasia|negative regulation of platelet activation|nitric oxide biosynthetic process|platelet activation|positive regulation of angiogenesis|positive regulation of guanylate cyclase activity|positive regulation of vasodilation|regulation of blood vessel size|regulation of nitric-oxide synthase activity|regulation of systemic arterial blood pressure by endothelin|response to fluid shear stress|response to heat|smooth muscle hyperplasia	caveola|cytoskeleton|cytosol|Golgi membrane	actin monomer binding|arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			central_nervous_system(5)|large_intestine(2)|skin(1)	8	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	L-Arginine(DB00125)|L-Citrulline(DB00155)|Rosuvastatin(DB01098)|Tetrahydrobiopterin(DB00360)	CCACGAACAGCGGCTTCAAGA	0.657		NA											5	21					0	0	0	0
ZNF596	169270	broad.mit.edu	37	8	196070	196070	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr8:196070G>A	uc003wot.2	+	6	1511	c.1223G>A	c.(1222-1224)CGA>CAA	p.R408Q	ZNF596_uc003wou.2_Missense_Mutation_p.R307Q|ZNF596_uc003wov.2_Missense_Mutation_p.R408Q|ZNF596_uc003wow.2_Missense_Mutation_p.R408Q	NM_173539	NP_775810	Q8TC21	ZN596_HUMAN	zinc finger protein 596	408	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(2;4.81e-29)|all_epithelial(2;5.03e-19)|Lung NSC(2;8.68e-08)|all_lung(2;1.52e-07)|Ovarian(12;0.00965)|Colorectal(14;0.0367)|all_neural(12;0.0837)|Myeloproliferative disorder(644;0.116)|all_hematologic(2;0.138)|Acute lymphoblastic leukemia(644;0.242)		Epithelial(5;3.77e-18)|all cancers(2;5.2e-17)|OV - Ovarian serous cystadenocarcinoma(5;5.37e-09)|BRCA - Breast invasive adenocarcinoma(11;1.7e-06)|Colorectal(2;6.51e-05)|READ - Rectum adenocarcinoma(2;0.0276)|COAD - Colon adenocarcinoma(149;0.0702)		GACCTCAGACGACATGAGAGA	0.438		NA											20	38					0	0	0	0
SDCBP	6386	broad.mit.edu	37	8	59494271	59494271	+	Missense_Mutation	SNP	T	T	C			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr8:59494271T>C	uc003xtn.2	+	9	1019	c.869T>C	c.(868-870)CTA>CCA	p.L290P	SDCBP_uc003xto.2_Missense_Mutation_p.L289P|SDCBP_uc003xtr.2_Missense_Mutation_p.L289P|SDCBP_uc003xtp.2_Missense_Mutation_p.L284P|SDCBP_uc003xtq.2_Missense_Mutation_p.L290P|SDCBP_uc003xts.2_Missense_Mutation_p.L296P|SDCBP_uc011led.1_Missense_Mutation_p.L231P	NM_005625	NP_005616	O00560	SDCB1_HUMAN	syntenin isoform 1	290					actin cytoskeleton organization|axon guidance|positive regulation of phosphorylation|protein targeting to membrane|substrate-dependent cell migration, cell extension|synaptic transmission	cytoskeleton|cytosol|endoplasmic reticulum membrane|focal adhesion|interleukin-5 receptor complex|melanosome|nucleus	cytoskeletal adaptor activity|frizzled binding|interleukin-5 receptor binding|protein heterodimerization activity|protein N-terminus binding|syndecan binding				0		all_lung(136;0.0271)|Lung NSC(129;0.0351)|all_epithelial(80;0.0554)				ATGAAAAGCCTAATGGACCAC	0.388		NA											3	129					0	0	0	0
ARMC1	55156	broad.mit.edu	37	8	66539564	66539564	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr8:66539564G>C	uc003xvl.2	-	2	305	c.70C>G	c.(70-72)CTA>GTA	p.L24V	ARMC1_uc011leo.1_Translation_Start_Site	NM_018120	NP_060590	Q9NVT9	ARMC1_HUMAN	armadillo repeat-containing protein	24					metal ion transport		metal ion binding			skin(1)	1			Epithelial(68;0.103)|OV - Ovarian serous cystadenocarcinoma(28;0.235)			TCTGCTGCTAGATCCCGTAAC	0.463		NA											32	168					0	0	0	0
SULF1	23213	broad.mit.edu	37	8	70570762	70570762	+	Nonsense_Mutation	SNP	G	G	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr8:70570762G>T	uc010lza.1	+	23	3325	c.2608G>T	c.(2608-2610)GAA>TAA	p.E870*	SULF1_uc003xyd.2_Nonsense_Mutation_p.E870*|SULF1_uc003xye.2_Nonsense_Mutation_p.E870*|SULF1_uc003xyf.2_Nonsense_Mutation_p.E870*|SULF1_uc003xyg.2_Nonsense_Mutation_p.E870*|SULF1_uc003xyh.1_RNA|SULF1_uc003xyi.1_Silent_p.G16G|SULF1_uc003xyj.1_Silent_p.G16G	NM_015170	NP_055985	Q8IWU6	SULF1_HUMAN	sulfatase 1 precursor	870					apoptosis|bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			central_nervous_system(3)|ovary(2)|pancreas(1)|skin(1)	7	Breast(64;0.0654)		Epithelial(68;0.0124)|OV - Ovarian serous cystadenocarcinoma(28;0.0265)|all cancers(69;0.0534)			GGATGGATGGGAAGGTTAATC	0.433		NA											40	45					8.05e-23	3.7e-22	1	0
LRRCC1	85444	broad.mit.edu	37	8	86035688	86035688	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr8:86035688G>A	uc003ycw.2	+	7	1125	c.971G>A	c.(970-972)AGA>AAA	p.R324K	LRRCC1_uc010lzz.1_Intron|LRRCC1_uc010maa.1_Missense_Mutation_p.R25K|LRRCC1_uc003ycx.2_Missense_Mutation_p.R231K|LRRCC1_uc003ycy.2_Missense_Mutation_p.R304K	NM_033402	NP_208325	Q9C099	LRCC1_HUMAN	sodium channel associated protein 2 isoform a	324					cell division|mitosis	centriole|nucleus					0						AAAGACCCCAGACCAAAAAGA	0.308		NA											4	155					0	0	0	0
ESRP1	54845	broad.mit.edu	37	8	95677422	95677423	+	Missense_Mutation	DNP	GT	GT	TA			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr8:95677422_95677423GT>TA	uc003ygq.3	+	9	1112_1113	c.929_930GT>TA	c.(928-930)GGT>GTA	p.G310V	ESRP1_uc003ygr.3_Missense_Mutation_p.G310V|ESRP1_uc003ygs.3_Missense_Mutation_p.G310V|ESRP1_uc003ygt.3_Missense_Mutation_p.G310V|ESRP1_uc003ygu.3_Missense_Mutation_p.G310V|ESRP1_uc003ygv.2_Missense_Mutation_p.G150V|ESRP1_uc003ygw.2_Missense_Mutation_p.G150V	NM_017697	NP_060167	Q6NXG1	ESRP1_HUMAN	RNA binding motif protein 35A isoform 1	310					mRNA processing|regulation of RNA splicing|RNA splicing	nucleus|plasma membrane	mRNA binding|nucleotide binding		ESRP1/RAF1(4)	prostate(4)	4						AAAATTGCTGGTGGTAAGTGCC	0.347		NA											9	26					0	0	0	0
TRPS1	7227	broad.mit.edu	37	8	116631947	116631947	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr8:116631947G>C	uc003ynz.2	-	2	798	c.339C>G	c.(337-339)TTC>TTG	p.F113L	TRPS1_uc011lhy.1_Missense_Mutation_p.F117L|TRPS1_uc003yny.2_Missense_Mutation_p.F126L|TRPS1_uc010mcy.2_Missense_Mutation_p.F113L	NM_014112	NP_054831	Q9UHF7	TRPS1_HUMAN	zinc finger transcription factor TRPS1	113					negative regulation of transcription from RNA polymerase II promoter|NLS-bearing substrate import into nucleus|regulation of chondrocyte differentiation|skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_cancers(13;5.44e-23)|all_epithelial(1;2.14e-27)|Lung NSC(37;2.55e-05)|Ovarian(258;0.0219)		Epithelial(1;9.78e-37)|all cancers(1;3.14e-31)|BRCA - Breast invasive adenocarcinoma(1;2.56e-12)			CTGGAGATGAGAAAGCCAACA	0.527		NA							Langer-Giedion_syndrome				28	116					0	0	0	0
RECQL4	9401	broad.mit.edu	37	8	145737407	145737407	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr8:145737407C>T	uc003zdj.2	-	20	3312	c.3280G>A	c.(3280-3282)GAG>AAG	p.E1094K		NM_004260	NP_004251	O94761	RECQ4_HUMAN	RecQ protein-like 4	1094					DNA duplex unwinding|DNA recombination|DNA repair	cytoplasm|nucleus	ATP binding|ATP-dependent 3'-5' DNA helicase activity|bubble DNA binding|DNA strand annealing activity|zinc ion binding			breast(2)|lung(1)|skin(1)	4	all_cancers(97;5.56e-11)|all_epithelial(106;3.54e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.48e-41)|Epithelial(56;1.85e-40)|all cancers(56;3.59e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0483)|Colorectal(110;0.055)			CTGCGCTCCTCATCCTGCTGC	0.682		NA	N|F|S			osteosarcoma|skin basal and sqamous cell		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	RAPADILINO_syndrome|Rothmund-Thomson_syndrome|Baller-Gerold_syndrome				5	29					0	0	0	0
TAF1L	138474	broad.mit.edu	37	9	32633291	32633291	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr9:32633291C>T	uc003zrg.1	-	1	2377	c.2287G>A	c.(2287-2289)GAG>AAG	p.E763K	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	763					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		AGGTTGTTCTCAAGTGCCTGC	0.433		NA											8	99					0	0	0	0
APBA1	320	broad.mit.edu	37	9	72047505	72047505	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr9:72047505C>T	uc004ahh.2	-	12	2665	c.2389G>A	c.(2389-2391)GTG>ATG	p.V797M		NM_001163	NP_001154	Q02410	APBA1_HUMAN	amyloid beta A4 precursor protein-binding,	797	PDZ 2.				axon cargo transport|cell adhesion|intracellular protein transport|nervous system development|protein complex assembly|synaptic transmission	synaptic vesicle				lung(1)	1						GGGGTGGCCACGACGCTCTGT	0.607		NA											20	38					0	0	0	0
TMEM2	23670	broad.mit.edu	37	9	74347385	74347385	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr9:74347385C>T	uc011lsa.1	-	7	1985	c.1445G>A	c.(1444-1446)AGA>AAA	p.R482K	TMEM2_uc010mos.2_Missense_Mutation_p.R419K|TMEM2_uc011lsb.1_RNA	NM_013390	NP_037522	Q9UHN6	TMEM2_HUMAN	transmembrane protein 2 isoform a	482						integral to membrane				ovary(2)	2		all_epithelial(88;4.56e-14)|Myeloproliferative disorder(762;0.0255)		GBM - Glioblastoma multiforme(74;7.45e-21)|OV - Ovarian serous cystadenocarcinoma(323;1.02e-16)		AACCTCAGCTCTCATGTCTAC	0.408		NA											5	38					0	0	0	0
ANKS6	203286	broad.mit.edu	37	9	101552849	101552849	+	Silent	SNP	G	G	A			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr9:101552849G>A	uc004ayu.2	-	2	420	c.399C>T	c.(397-399)CAC>CAT	p.H133H	ANKS6_uc004ayy.1_RNA	NM_173551	NP_775822	Q68DC2	ANKS6_HUMAN	ankyrin repeat and sterile alpha motif domain	133	ANK 3.									ovary(2)	2		Acute lymphoblastic leukemia(62;0.0527)				CATCAGCCCCGTGATCCAACA	0.597		NA											11	29					0	0	0	0
ALG2	85365	broad.mit.edu	37	9	101980890	101980890	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr9:101980890G>C	uc004azf.2	-	2	647	c.577C>G	c.(577-579)CAC>GAC	p.H193D	ALG2_uc004azg.2_Missense_Mutation_p.H100D	NM_033087	NP_149078	Q9H553	ALG2_HUMAN	alpha-1,3-mannosyltransferase ALG2	193					dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein glycosylation in endoplasmic reticulum|protein N-linked glycosylation via asparagine|response to calcium ion	endoplasmic reticulum membrane|integral to membrane|membrane fraction|nucleus|perinuclear region of cytoplasm	alpha-1,3-mannosyltransferase activity|calcium-dependent protein binding|glycolipid 3-alpha-mannosyltransferase activity|protein anchor|protein heterodimerization activity|protein N-terminus binding	p.H193P(1)		ovary(2)	2		Acute lymphoblastic leukemia(62;0.0559)				GGGTCTATGTGAGACAGGGAC	0.453		NA											13	97					0	0	0	0
AMBP	259	broad.mit.edu	37	9	116840403	116840403	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr9:116840403G>C	uc004bie.3	-	1	350	c.87C>G	c.(85-87)ATC>ATG	p.I29M	AMBP_uc011lxk.1_5'Flank|AMBP_uc010mvc.1_RNA	NM_001633	NP_001624	P02760	AMBP_HUMAN	alpha-1-microglobulin/bikunin preproprotein	29					cell adhesion|female pregnancy|heme catabolic process|interspecies interaction between organisms|negative regulation of immune response|negative regulation of JNK cascade|protein-chromophore linkage	extracellular region|plasma membrane	calcium channel inhibitor activity|calcium oxalate binding|heme binding|IgA binding|protein homodimerization activity|serine-type endopeptidase inhibitor activity|transporter activity			skin(1)	1					Human Serum Albumin(DB00062)|Serum albumin iodonated(DB00064)	CCTGCACTTGGATGTTGTCGG	0.637		NA											14	105					0	0	0	0
OR1N2	138882	broad.mit.edu	37	9	125316206	125316206	+	Missense_Mutation	SNP	A	A	C			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr9:125316206A>C	uc011lyx.1	+	1	758	c.758A>C	c.(757-759)AAG>ACG	p.K253T		NM_001004457	NP_001004457	Q8NGR9	OR1N2_HUMAN	olfactory receptor, family 1, subfamily N,	253	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4						GGGAGATGGAAGGCCTTCTCT	0.498		NA											54	125					0	0	0	0
FAM129B	64855	broad.mit.edu	37	9	130269539	130269539	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr9:130269539G>A	uc004brh.2	-	14	2028	c.1826C>T	c.(1825-1827)TCA>TTA	p.S609L	FAM129B_uc004bri.2_Missense_Mutation_p.S596L|FAM129B_uc004brj.3_3'UTR	NM_022833	NP_073744	Q96TA1	NIBL1_HUMAN	hypothetical protein LOC64855 isoform 1	609							protein binding				0						GAGGGTGGCTGACTCCGGGGT	0.697		NA											5	52					0	0	0	0
FPGS	2356	broad.mit.edu	37	9	130572339	130572339	+	Missense_Mutation	SNP	A	A	G			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr9:130572339A>G	uc004bsg.1	+	13	1291	c.1241A>G	c.(1240-1242)AAT>AGT	p.N414S	FPGS_uc004bsh.1_Missense_Mutation_p.N231S|FPGS_uc011mal.1_Missense_Mutation_p.N388S|FPGS_uc004bsi.1_Missense_Mutation_p.N364S	NM_004957	NP_004948	Q05932	FOLC_HUMAN	folylpolyglutamate synthase isoform a precursor	414					folic acid metabolic process|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|one-carbon metabolic process	cytosol|mitochondrial matrix	ATP binding|tetrahydrofolylpolyglutamate synthase activity				0					L-Glutamic Acid(DB00142)	TTGCTCTTCAATGCTACCGGG	0.637		NA											8	22					0	0	0	0
BCOR	54880	broad.mit.edu	37	X	39932420	39932420	+	Missense_Mutation	SNP	G	G	T			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chrX:39932420G>T	uc004den.3	-	4	2471	c.2179C>A	c.(2179-2181)CCC>ACC	p.P727T	BCOR_uc004dep.3_Missense_Mutation_p.P727T|BCOR_uc004deo.3_Missense_Mutation_p.P727T|BCOR_uc004dem.3_Missense_Mutation_p.P727T|BCOR_uc004deq.3_Missense_Mutation_p.P727T	NM_001123385	NP_001116857	Q6W2J9	BCOR_HUMAN	BCL-6 interacting corepressor isoform c	727					heart development|histone H2A monoubiquitination|negative regulation of bone mineralization|negative regulation of histone H3-K36 methylation|negative regulation of histone H3-K4 methylation|negative regulation of tooth mineralization|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|palate development|specification of axis polarity|transcription, DNA-dependent	nucleus	heat shock protein binding|histone deacetylase binding|transcription corepressor activity|transcription factor binding|transcription regulatory region DNA binding			ovary(2)|kidney(1)|central_nervous_system(1)	4						ATCAACATGGGATGCACCATG	0.582		NA											30	56					6.39e-12	2.76e-11	1	0
DGKK	139189	broad.mit.edu	37	X	50119800	50119800	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chrX:50119800G>A	uc010njr.1	-	24	3289	c.3229C>T	c.(3229-3231)CAG>TAG	p.Q1077*		NM_001013742	NP_001013764	Q5KSL6	DGKK_HUMAN	diacylglycerol kinase kappa	1077					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|diacylglycerol metabolic process|intracellular signal transduction|platelet activation|response to oxidative stress	cytoplasm|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)	2	Ovarian(276;0.236)					TGCTGCATCTGGGCATACTCC	0.502		NA											8	10					0	0	0	0
EPHA2	1969	broad.mit.edu	37	1	16475417	16475418	+	Frame_Shift_Ins	INS	-	-	CGCT			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr1:16475417_16475418insCGCT	uc001aya.1	-	3	415_416	c.278_279insAGCG	c.(277-279)CGTfs	p.R93fs	EPHA2_uc010oca.1_Frame_Shift_Ins_p.R93fs	NM_004431	NP_004422	P29317	EPHA2_HUMAN	ephrin receptor EphA2 precursor	93	Extracellular (Potential).				activation of Rac GTPase activity|angiogenesis|apoptosis|cell chemotaxis|negative regulation of protein kinase B signaling cascade|positive regulation of establishment of protein localization in plasma membrane|protein kinase B signaling cascade|regulation of blood vessel endothelial cell migration|regulation of cell adhesion mediated by integrin|regulation of lamellipodium assembly|response to growth factor stimulus	focal adhesion|integral to plasma membrane|lamellipodium membrane|ruffle membrane	ATP binding|ephrin receptor activity|protein binding			lung(3)|central_nervous_system(3)|stomach(2)|ovary(2)	10		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|Colorectal(212;3.63e-07)|COAD - Colon adenocarcinoma(227;2.25e-05)|BRCA - Breast invasive adenocarcinoma(304;9.58e-05)|Kidney(64;0.000175)|KIRC - Kidney renal clear cell carcinoma(64;0.00261)|STAD - Stomach adenocarcinoma(313;0.00669)|READ - Rectum adenocarcinoma(331;0.0649)	Dasatinib(DB01254)	CAATGAAGATACGCTCAGCCTC	0.545		NA											37	56	---	---	---	---	NA	NA	NA	NA
KIAA1522	57648	broad.mit.edu	37	1	33237578	33237578	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr1:33237578delC	uc001bvv.2	+	6	2757	c.2621delC	c.(2620-2622)GCGfs	p.A874fs	KIAA1522_uc001bvu.1_Frame_Shift_Del_p.A933fs|KIAA1522_uc010ohm.1_Frame_Shift_Del_p.A885fs|KIAA1522_uc010ohn.1_Intron	NM_020888	NP_065939	Q9P206	K1522_HUMAN	hypothetical protein LOC57648	874	Pro-rich.										0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.244)				CTCCATGCTGCGGTCCGACTC	0.706		NA											8	21	---	---	---	---	NA	NA	NA	NA
ZMYM1	79830	broad.mit.edu	37	1	35578796	35578798	+	In_Frame_Del	DEL	TAT	TAT	-			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr1:35578796_35578798delTAT	uc001bym.2	+	11	1513_1515	c.1365_1367delTAT	c.(1363-1368)AGTATT>AGT	p.I456del	ZMYM1_uc001byn.2_In_Frame_Del_p.I456del|ZMYM1_uc010ohu.1_In_Frame_Del_p.I437del|ZMYM1_uc001byo.2_In_Frame_Del_p.I96del|ZMYM1_uc009vut.2_In_Frame_Del_p.I381del	NM_024772	NP_079048	Q5SVZ6	ZMYM1_HUMAN	zinc finger, MYM domain containing 1	456	TTF-type.					nucleus	nucleic acid binding|protein dimerization activity|zinc ion binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				AATCACGAAGTATTAAAAAATCT	0.3		NA											19	31	---	---	---	---	NA	NA	NA	NA
TAS2R7	50837	broad.mit.edu	37	12	10954441	10954443	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr12:10954441_10954443delGAG	uc001qyv.2	-	1	784_786	c.727_729delCTC	c.(727-729)CTCdel	p.L243del		NM_023919	NP_076408	Q9NYW3	TA2R7_HUMAN	taste receptor, type 2, member 7	243	Helical; Name=6; (Potential).				sensory perception of taste	integral to membrane	taste receptor activity			skin(1)	1						AGGCAATAAAGAGGAGAAGGAAG	0.483		NA											10	61	---	---	---	---	NA	NA	NA	NA
PAPD5	64282	broad.mit.edu	37	16	50259097	50259097	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr16:50259097delT	uc010vgo.1	+	11	1691	c.1656delT	c.(1654-1656)TGTfs	p.C552fs	PAPD5_uc010cbi.2_RNA|PAPD5_uc002efz.2_Intron|PAPD5_uc002ega.2_Frame_Shift_Del_p.C343fs	NM_001040284	NP_001035374	Q8NDF8	PAPD5_HUMAN	PAP associated domain containing 5 isoform a	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell division|DNA replication|histone mRNA catabolic process|mitosis	cytoplasm|nucleus	DNA binding|DNA-directed DNA polymerase activity|metal ion binding				0		all_cancers(37;0.0452)		BRCA - Breast invasive adenocarcinoma(181;0.0843)|GBM - Glioblastoma multiforme(240;0.231)		TTGGAAAATGTAGAAGTAAAA	0.393		NA											11	26	---	---	---	---	NA	NA	NA	NA
FOSL2	2355	broad.mit.edu	37	2	28634924	28634925	+	Frame_Shift_Ins	INS	-	-	GC			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr2:28634924_28634925insGC	uc002rma.2	+	4	1399_1400	c.590_591insGC	c.(589-591)GAGfs	p.E197fs	FOSL2_uc010ymi.1_Frame_Shift_Ins_p.E158fs	NM_005253	NP_005244	P15408	FOSL2_HUMAN	FOS-like antigen 2	197					cell death|regulation of transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|breast(1)	3	Acute lymphoblastic leukemia(172;0.155)					AGCCCCGAGGAGCGCCGATCGC	0.639		NA											29	70	---	---	---	---	NA	NA	NA	NA
KCNJ3	3760	broad.mit.edu	37	2	155711297	155711297	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr2:155711297delT	uc002tyv.1	+	3	1173	c.978delT	c.(976-978)CGTfs	p.R326fs	KCNJ3_uc010zce.1_3'UTR	NM_002239	NP_002230	P48549	IRK3_HUMAN	potassium inwardly-rectifying channel J3	326	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			upper_aerodigestive_tract(1)|pancreas(1)	2					Halothane(DB01159)	GGGGTCATCGTTTTTTTCCTG	0.383		NA											20	57	---	---	---	---	NA	NA	NA	NA
HYAL2	8692	broad.mit.edu	37	3	50356381	50356389	+	Splice_Site	DEL	GCTTACCGT	GCTTACCGT	-			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr3:50356381_50356389delGCTTACCGT	uc003czu.2	-	3	1231	c.1011_splice	c.e3+1	p.T337_splice	HYAL2_uc003czx.2_Splice_Site_p.T337_splice|HYAL2_uc003czv.2_Splice_Site_p.T337_splice|HYAL2_uc003czw.2_Splice_Site_p.T337_splice|HYAL2_uc010hlj.2_In_Frame_Del_p.TVS337del	NM_033158	NP_149348	Q12891	HYAL2_HUMAN	hyaluronoglucosaminidase 2 precursor							anchored to membrane|lysosome|plasma membrane	hyalurononglucosaminidase activity|receptor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00605)	Hyaluronidase(DB00070)	GCTGGGTCTCGCTTACCGTGCTTGTGGTG	0.584		NA											9	43	---	---	---	---	NA	NA	NA	NA
CDH9	1007	broad.mit.edu	37	5	26881690	26881690	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CV-7104-01A-11D-2012-08	TCGA-CV-7104-10A-01D-2013-08	 	 	 	 	 	 	 	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4f429401-f71e-4908-9663-2e66bacbebdd	b0f2c7dd-277a-4b14-af9d-0d07c789508a	g.chr5:26881690delT	uc003jgs.1	-	12	2094	c.1925delA	c.(1924-1926)AAGfs	p.K642fs	CDH9_uc011cnv.1_Frame_Shift_Del_p.K235fs	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	642	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						CAGAGGTTCCTTTTTTCTTTG	0.398		NA											8	156	---	---	---	---	NA	NA	NA	NA
