Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	X1000Genome_AA	X1000Genome_AC	X1000Genome_AF	X1000Genome_AFR_AF	X1000Genome_AMR_AF	X1000Genome_AN	X1000Genome_ASN_AF	X1000Genome_AVGPOST	X1000Genome_CIEND	X1000Genome_CIPOS	X1000Genome_END	X1000Genome_ERATE	X1000Genome_EUR_AF	X1000Genome_HOMLEN	X1000Genome_HOMSEQ	X1000Genome_LDAF	X1000Genome_RSQ	X1000Genome_SNPSOURCE	X1000Genome_SVLEN	X1000Genome_SVTYPE	X1000Genome_THETA	X1000Genome_VT	ACHILLES_Lineage_Results_Top_Genes	CGC_Cancer.Germline.Mut	CGC_Cancer.Molecular.Genetics	CGC_Cancer.Somatic.Mut	CGC_Cancer.Syndrome	CGC_Chr	CGC_Chr.Band	CGC_GeneID	CGC_Name	CGC_Other.Germline.Mut	CGC_Tissue.Type	COSMIC_n_overlapping_mutations	COSMIC_overlapping_mutation_descriptions	COSMIC_overlapping_primary_sites	ClinVar_ASSEMBLY	ClinVar_HGMD_ID	ClinVar_SYM	ClinVar_TYPE	ClinVar_rs	ESP_AA	ESP_AAC	ESP_AA_AC	ESP_AA_AGE	ESP_AA_GTC	ESP_AvgAAsampleReadDepth	ESP_AvgEAsampleReadDepth	ESP_AvgSampleReadDepth	ESP_CA	ESP_CDP	ESP_CG	ESP_CP	ESP_Chromosome	ESP_DBSNP	ESP_DP	ESP_EA_AC	ESP_EA_AGE	ESP_EA_GTC	ESP_EXOME_CHIP	ESP_FG	ESP_GL	ESP_GM	ESP_GS	ESP_GTC	ESP_GTS	ESP_GWAS_PUBMED	ESP_MAF	ESP_PH	ESP_PP	ESP_Position	ESP_TAC	ESP_TotalAAsamplesCovered	ESP_TotalEAsamplesCovered	ESP_TotalSamplesCovered	Ensembl_so_accession	Ensembl_so_term	Familial_Cancer_Genes_Reference	Familial_Cancer_Genes_Synonym	HGNC_Accession.Numbers	HGNC_CCDS.IDs	HGNC_Chromosome	HGNC_Date.Modified	HGNC_Date.Name.Changed	HGNC_Date.Symbol.Changed	HGNC_Ensembl.Gene.ID	HGNC_Ensembl.ID.supplied.by.Ensembl.	HGNC_Entrez.Gene.ID	HGNC_Entrez.Gene.ID.supplied.by.NCBI.	HGNC_Enzyme.IDs	HGNC_Gene.family.description	HGNC_HGNC.ID	HGNC_Locus.Group	HGNC_Locus.Type	HGNC_Name.Synonyms	HGNC_OMIM.ID.supplied.by.NCBI.	HGNC_Previous.Names	HGNC_Previous.Symbols	HGNC_Primary.IDs	HGNC_Pubmed.IDs	HGNC_Record.Type	HGNC_RefSeq.IDs	HGNC_RefSeq.supplied.by.NCBI.	HGNC_Secondary.IDs	HGNC_Status	HGNC_Synonyms	HGNC_UCSC.ID.supplied.by.UCSC.	HGNC_UniProt.ID.supplied.by.UniProt.	HGNC_VEGA.IDs	HGVS_coding_DNA_change	HGVS_genomic_change	HGVS_protein_change	ORegAnno_bin	UniProt_alt_uniprot_accessions	build	ccds_id	dbNSFP_1000Gp1_AC	dbNSFP_1000Gp1_AF	dbNSFP_1000Gp1_AFR_AC	dbNSFP_1000Gp1_AFR_AF	dbNSFP_1000Gp1_AMR_AC	dbNSFP_1000Gp1_AMR_AF	dbNSFP_1000Gp1_ASN_AC	dbNSFP_1000Gp1_ASN_AF	dbNSFP_1000Gp1_EUR_AC	dbNSFP_1000Gp1_EUR_AF	dbNSFP_Ancestral_allele	dbNSFP_CADD_phred	dbNSFP_CADD_raw	dbNSFP_CADD_raw_rankscore	dbNSFP_ESP6500_AA_AF	dbNSFP_ESP6500_EA_AF	dbNSFP_Ensembl_geneid	dbNSFP_Ensembl_transcriptid	dbNSFP_FATHMM_pred	dbNSFP_FATHMM_rankscore	dbNSFP_FATHMM_score	dbNSFP_GERP.._NR	dbNSFP_GERP.._RS	dbNSFP_GERP.._RS_rankscore	dbNSFP_Interpro_domain	dbNSFP_LRT_Omega	dbNSFP_LRT_converted_rankscore	dbNSFP_LRT_pred	dbNSFP_LRT_score	dbNSFP_LR_pred	dbNSFP_LR_rankscore	dbNSFP_LR_score	dbNSFP_MutationAssessor_pred	dbNSFP_MutationAssessor_rankscore	dbNSFP_MutationAssessor_score	dbNSFP_MutationTaster_converted_rankscore	dbNSFP_MutationTaster_pred	dbNSFP_MutationTaster_score	dbNSFP_Polyphen2_HDIV_pred	dbNSFP_Polyphen2_HDIV_rankscore	dbNSFP_Polyphen2_HDIV_score	dbNSFP_Polyphen2_HVAR_pred	dbNSFP_Polyphen2_HVAR_rankscore	dbNSFP_Polyphen2_HVAR_score	dbNSFP_RadialSVM_pred	dbNSFP_RadialSVM_rankscore	dbNSFP_RadialSVM_score	dbNSFP_Reliability_index	dbNSFP_SIFT_converted_rankscore	dbNSFP_SIFT_pred	dbNSFP_SIFT_score	dbNSFP_SLR_test_statistic	dbNSFP_SiPhy_29way_logOdds	dbNSFP_SiPhy_29way_logOdds_rankscore	dbNSFP_SiPhy_29way_pi	dbNSFP_UniSNP_ids	dbNSFP_Uniprot_aapos	dbNSFP_Uniprot_acc	dbNSFP_Uniprot_id	dbNSFP_aaalt	dbNSFP_aapos	dbNSFP_aapos_FATHMM	dbNSFP_aapos_SIFT	dbNSFP_aaref	dbNSFP_cds_strand	dbNSFP_codonpos	dbNSFP_fold.degenerate	dbNSFP_genename	dbNSFP_hg18_pos.1.coor.	dbNSFP_phastCons100way_vertebrate	dbNSFP_phastCons100way_vertebrate_rankscore	dbNSFP_phastCons46way_placental	dbNSFP_phastCons46way_placental_rankscore	dbNSFP_phastCons46way_primate	dbNSFP_phastCons46way_primate_rankscore	dbNSFP_phyloP100way_vertebrate	dbNSFP_phyloP100way_vertebrate_rankscore	dbNSFP_phyloP46way_placental	dbNSFP_phyloP46way_placental_rankscore	dbNSFP_phyloP46way_primate	dbNSFP_phyloP46way_primate_rankscore	dbNSFP_refcodon	gencode_transcript_name	gencode_transcript_status	gencode_transcript_tags	gencode_transcript_type	gene_id	gene_type	havana_transcript	secondary_variant_classification	strand	transcript_id	variant_classification	variant_type	key	t_ref_count	t_alt_count
AKT3	10000	broad.mit.edu	37	1	243736307	243736307	+	Missense_Mutation	SNP	C	C	T			TCGA-IB-AAUV-01A-11D-A38G-08	TCGA-IB-AAUV-10A-01D-A38J-08	C	C	-	-	C	C	Unknown	Untested	Somatic	NA	WXS	none	NA	NA	Illumina HiSeq	a6ed3bc0-d0b9-4ab8-b0aa-f95c82c12cc7	2d3fe7a3-7260-43ff-8dc6-1ef945e51bd7	g.chr1:243736307C>T	ENST00000366539.1	-	9	940	c.740G>A	c.(739-741)cGc>cAc	p.R247H	AKT3_ENST00000263826.5_Missense_Mutation_p.R247H|AKT3_ENST00000336199.5_Missense_Mutation_p.R247H|AKT3_ENST00000366540.1_Missense_Mutation_p.R247H			Q9Y243	AKT3_HUMAN	v-akt murine thymoma viral oncogene homolog 3	247	Protein kinase.				signal transduction	Golgi apparatus|nucleus|plasma membrane	ATP binding|protein binding|protein serine/threonine kinase activity			breast(1)|central_nervous_system(1)|cervix(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(3)|lung(12)|prostate(1)|skin(3)|stomach(1)	26	all_cancers(71;0.000307)|all_epithelial(71;0.000374)|all_lung(81;0.0323)|Ovarian(71;0.0619)|all_neural(11;0.101)|Lung NSC(105;0.168)	all_cancers(173;0.0274)	all cancers(7;4.3e-08)|GBM - Glioblastoma multiforme(7;5.12e-06)|OV - Ovarian serous cystadenocarcinoma(106;0.00196)			GAAACGTGTGCGGTCCTCAGA	0.418		NA												NA	NA	NA	NA	NA	NA	NA			NA	NA	NA	NA	NA	NA	NA		NA	NA	NA									NA				0													73	71	72			NA	NA	1		NA											NA				243736307		2203	4300	6503	SO:0001583	missense			AF124141	CCDS31076.1, CCDS31077.1	1q44	2013-07-09	2013-07-09		ENSG00000117020	ENSG00000117020	10000	10000	2.7.11.1	Pleckstrin homology (PH) domain containing	393	protein-coding gene	gene with protein product	protein kinase B, gamma	611223			NA	10092583, 10208883	Standard	NM_181690	NM_005465	NA	Approved	PKBG, RAC-gamma, PRKBG	uc001iab.2	Q9Y243	OTTHUMG00000039994	ENST00000366539.1:c.740G>A	1.37:g.243736307C>T	ENSP00000355497:p.Arg247His	NA	Q0VAA6|Q5VTI1|Q5VTI2|Q96QV3|Q9UFP5	37	CCDS31077.1	.	.	.	.	.	.	.	.	.	.	C	34	5.395614	0.96009	.	.	ENSG00000117020	ENST00000336199;ENST00000366540;ENST00000366539;ENST00000263826	T;T;T;T	0.65178	-0.14;-0.14;-0.14;-0.14	5.87	5.87	0.94306	Serine/threonine-protein kinase-like domain (1);Serine/threonine-protein kinase, catalytic  domain (1);Protein kinase-like domain (1);Protein kinase, catalytic domain (1);	0.000000	0.85682	D	0.000000	T	0.66684	0.2814	N	0.17872	0.535	0.80722	D	1	D;D	0.69078	0.997;0.983	P;P	0.59825	0.864;0.634	T	0.70490	-0.4857	10	0.87932	D	0	.	20.206	0.98277	0.0:1.0:0.0:0.0	.	247;247	Q9Y243;Q9Y243-2	AKT3_HUMAN;.	H	247	ENSP00000336943:R247H;ENSP00000355498:R247H;ENSP00000355497:R247H;ENSP00000263826:R247H	ENSP00000263826:R247H	R	-	2	0	AKT3	241802930	1.000000	0.71417	1.000000	0.80357	0.998000	0.95712	7.818000	0.86416	2.785000	0.95823	0.655000	0.94253	CGC	AKT3-001	KNOWN	basic|appris_principal|CCDS	protein_coding	NA	protein_coding	OTTHUMT00000096479.1		-	ENST00000366539.1	Missense_Mutation	SNP	1 : 243736307 - 243736307 T PAAD-TCGA-IB-AAUV-Tumor-SM-5W7VH	284	4
BACE2	25825	broad.mit.edu	37	21	42613839	42613839	+	Missense_Mutation	SNP	C	C	T			TCGA-IB-AAUV-01A-11D-A38G-08	TCGA-IB-AAUV-10A-01D-A38J-08	C	C	-	-	C	C	Unknown	Untested	Somatic	NA	WXS	none	NA	NA	Illumina HiSeq	a6ed3bc0-d0b9-4ab8-b0aa-f95c82c12cc7	2d3fe7a3-7260-43ff-8dc6-1ef945e51bd7	g.chr21:42613839C>T	ENST00000347667.5	+	4	1175	c.712C>T	c.(712-714)Ccc>Tcc	p.P238S	BACE2_ENST00000328735.6_Missense_Mutation_p.P238S|BACE2_ENST00000330333.6_Missense_Mutation_p.P238S|BACE2_ENST00000466122.1_3'UTR	NM_138991.1	NP_620476.1	Q9Y5Z0	BACE2_HUMAN	beta-site APP-cleaving enzyme 2	NA					membrane protein ectodomain proteolysis|negative regulation of amyloid precursor protein biosynthetic process|peptide hormone processing	cell surface|endoplasmic reticulum|endosome|Golgi apparatus|integral to membrane	aspartic-type endopeptidase activity			endometrium(2)|large_intestine(3)|lung(4)|ovary(2)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	14		Prostate(19;1.57e-07)|all_epithelial(19;0.0251)				AGCCGGCTTGCCCGTTGCTGG	0.502		NA												NA	NA	NA	NA	NA	NA	NA			NA	NA	NA	NA	NA	NA	NA		NA	NA	NA									NA				0													173	178	177			NA	NA	21		NA											NA				42613839		2203	4300	6503	SO:0001583	missense			AF117892	CCDS13668.1, CCDS13669.1, CCDS13670.1	21q22.3	2011-08-11			ENSG00000182240	ENSG00000182240	25825	25825			934	protein-coding gene	gene with protein product		605668		AEPLC	NA	10965118, 10830953	Standard		NM_138991	NA	Approved	CEAP1, DRAP, ALP56	uc002yyw.3	Q9Y5Z0	OTTHUMG00000086742	ENST00000347667.5:c.712C>T	21.37:g.42613839C>T	ENSP00000327528:p.Pro238Ser	NA	A8K7P1|Q5DIH8|Q8N2D4|Q9H2V8|Q9NZL1|Q9NZL2|Q9UJT6	37	CCDS13669.1	.	.	.	.	.	.	.	.	.	.	C	13.32	2.201262	0.38905	.	.	ENSG00000182240	ENST00000330333;ENST00000347667;ENST00000328735;ENST00000544566	T;T;T	0.41758	0.99;0.99;0.99	5.53	5.53	0.82687	Peptidase aspartic (1);Peptidase aspartic, catalytic (1);	0.054012	0.85682	D	0.000000	T	0.32436	0.0829	L	0.29908	0.895	0.54753	D	0.999985	B;P;P	0.44195	0.015;0.828;0.559	B;B;B	0.36885	0.005;0.235;0.077	T	0.07028	-1.0794	10	0.32370	T	0.25	.	18.4818	0.90815	0.0:1.0:0.0:0.0	.	238;238;238	Q9Y5Z0-3;Q9Y5Z0-2;Q9Y5Z0	.;.;BACE2_HUMAN	S	238;238;238;143	ENSP00000332979:P238S;ENSP00000327528:P238S;ENSP00000333854:P238S	ENSP00000333854:P238S	P	+	1	0	BACE2	41535709	1.000000	0.71417	0.917000	0.36280	0.573000	0.36030	3.314000	0.51943	2.605000	0.88082	0.655000	0.94253	CCC	BACE2-002	KNOWN	basic|CCDS	protein_coding	NA	protein_coding	OTTHUMT00000195057.2		+	ENST00000347667.5	Missense_Mutation	SNP	21 : 42613839 - 42613839 T PAAD-TCGA-IB-AAUV-Tumor-SM-5W7VH	760	7
BSN	8927	broad.mit.edu	37	3	49701953	49701953	+	Silent	SNP	C	C	T			TCGA-IB-AAUV-01A-11D-A38G-08	TCGA-IB-AAUV-10A-01D-A38J-08	C	C	-	-	C	C	Unknown	Untested	Somatic	NA	WXS	none	NA	NA	Illumina HiSeq	a6ed3bc0-d0b9-4ab8-b0aa-f95c82c12cc7	2d3fe7a3-7260-43ff-8dc6-1ef945e51bd7	g.chr3:49701953C>T	ENST00000296452.4	+	9	11820	c.11706C>T	c.(11704-11706)ggC>ggT	p.G3902G		NM_003458.3	NP_003449.2	Q9UPA5	BSN_HUMAN	bassoon presynaptic cytomatrix protein	3902					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			breast(8)|central_nervous_system(2)|cervix(2)|endometrium(16)|kidney(3)|large_intestine(17)|lung(37)|ovary(7)|pancreas(1)|prostate(4)|skin(6)|upper_aerodigestive_tract(2)|urinary_tract(1)	106				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		TCCTCCCTGGCGGGGCAGCCG	0.642		NA												NA	NA	NA	NA	NA	NA	NA			NA	NA	NA	NA	NA	NA	NA		NA	NA	NA									NA				0													50	56	54			NA	NA	3		NA											NA				49701953		2203	4300	6503	SO:0001819	synonymous_variant			AF052224	CCDS2800.1	3p21	2013-01-07	2013-01-07		ENSG00000164061	ENSG00000164061	8927	8927			1117	protein-coding gene	gene with protein product	zinc finger protein 231, neuronal double zinc finger protein	604020	bassoon (presynaptic cytomatrix protein)	ZNF231	NA	9806829, 10329005	Standard	NM_003458	NM_003458	NA	Approved		uc003cxe.4	Q9UPA5	OTTHUMG00000133750	ENST00000296452.4:c.11706C>T	3.37:g.49701953C>T		NA	O43161|Q7LGH3	37	CCDS2800.1																																																																																			BSN-001	KNOWN	NMD_exception|basic|appris_principal|exp_conf|CCDS	protein_coding	NA	protein_coding	OTTHUMT00000258164.1		+	ENST00000296452.4	Silent	SNP	3 : 49701953 - 49701953 T PAAD-TCGA-IB-AAUV-Tumor-SM-5W7VH	265	5
CLN5	1203	broad.mit.edu	37	13	77570161	77570161	+	Missense_Mutation	SNP	C	C	T			TCGA-IB-AAUV-01A-11D-A38G-08	TCGA-IB-AAUV-10A-01D-A38J-08	C	C	-	-	C	C	Unknown	Untested	Somatic	NA	WXS	none	NA	NA	Illumina HiSeq	a6ed3bc0-d0b9-4ab8-b0aa-f95c82c12cc7	2d3fe7a3-7260-43ff-8dc6-1ef945e51bd7	g.chr13:77570161C>T	ENST00000377453.3	+	3	1903	c.611C>T	c.(610-612)gCc>gTc	p.A204V	CLN5_ENST00000485938.1_3'UTR	NM_006493.2	NP_006484.1	O75503	CLN5_HUMAN	ceroid-lipofuscinosis, neuronal 5	155					brain development|cell death|lysosomal lumen acidification|neuron maturation|protein catabolic process	endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosomal membrane|perinuclear region of cytoplasm	protein binding			breast(1)|endometrium(3)|kidney(1)|large_intestine(2)|lung(7)|ovary(1)|urinary_tract(1)	16		Acute lymphoblastic leukemia(28;0.205)		GBM - Glioblastoma multiforme(99;0.0503)		GAAATGGATGCCCCTTTCTGG	0.418		NA												NA	NA	NA	NA	NA	NA	NA			NA	NA	NA	NA	NA	NA	NA		NA	NA	NA									NA				0													176	161	166			NA	NA	13		NA											NA				77570161		2203	4300	6503	SO:0001583	missense				CCDS9456.1	13q21.2-q32	2014-09-17			ENSG00000102805	ENSG00000102805	1203	1203			2076	protein-coding gene	gene with protein product		608102			NA	7942847, 8661106	Standard	NM_006493	NM_006493	NA	Approved		uc001vkc.3	O75503	OTTHUMG00000017100	ENST00000377453.3:c.611C>T	13.37:g.77570161C>T	ENSP00000366673:p.Ala204Val	NA		37	CCDS9456.1	.	.	.	.	.	.	.	.	.	.	C	31	5.094188	0.94149	.	.	ENSG00000102805	ENST00000377453;ENST00000541907;ENST00000535238	D	0.88975	-2.45	5.54	4.67	0.58626	.	0.100063	0.64402	D	0.000002	D	0.92430	0.7597	M	0.67953	2.075	0.80722	D	1	D	0.67145	0.996	D	0.63877	0.919	D	0.92220	0.5783	10	0.52906	T	0.07	-12.9722	13.4957	0.61424	0.281:0.719:0.0:0.0	.	155	O75503	CLN5_HUMAN	V	204;155;70	ENSP00000366673:A204V	ENSP00000366673:A204V	A	+	2	0	CLN5	76468162	1.000000	0.71417	1.000000	0.80357	0.978000	0.69477	4.803000	0.62546	2.618000	0.88619	0.563000	0.77884	GCC	CLN5-001	KNOWN	basic|appris_principal|CCDS	protein_coding	NA	protein_coding	OTTHUMT00000045318.1		+	ENST00000377453.3	Missense_Mutation	SNP	13 : 77570161 - 77570161 T PAAD-TCGA-IB-AAUV-Tumor-SM-5W7VH	506	6
CRISPLD2	83716	broad.mit.edu	37	16	84906612	84906612	+	Silent	SNP	C	C	T			TCGA-IB-AAUV-01A-11D-A38G-08	TCGA-IB-AAUV-10A-01D-A38J-08	C	C	-	-	C	C	Unknown	Untested	Somatic	NA	WXS	none	NA	NA	Illumina HiSeq	a6ed3bc0-d0b9-4ab8-b0aa-f95c82c12cc7	2d3fe7a3-7260-43ff-8dc6-1ef945e51bd7	g.chr16:84906612C>T	ENST00000262424.5	+	10	1220	c.996C>T	c.(994-996)tgC>tgT	p.C332C	CRISPLD2_ENST00000564567.1_Silent_p.C332C|CRISPLD2_ENST00000567845.1_Silent_p.C331C	NM_031476.3	NP_113664.1	Q9H0B8	CRLD2_HUMAN	cysteine-rich secretory protein LCCL domain containing 2	332	LCCL 1.					extracellular region|transport vesicle		p.C332C(1)		endometrium(3)|large_intestine(5)|lung(8)|prostate(1)|stomach(1)	18						CTAGCATATGCCGCGCCGCCA	0.542		NA												NA	NA	NA	NA	NA	NA	NA			NA	NA	NA	NA	NA	NA	NA		NA	NA	NA									NA				1	Substitution - coding silent(1)	prostate(1)											104	101	102			NA	NA	16		NA											NA				84906612		2199	4300	6499	SO:0001819	synonymous_variant			AL136861	CCDS10949.1	16q24.1	2008-02-05	2005-02-16	2005-02-16	ENSG00000103196	ENSG00000103196	83716	83716			25248	protein-coding gene	gene with protein product		612434	LCCL domain containing cysteine-rich secretory protein 2	LCRISP2	NA	11230166	Standard	NM_031476	NM_031476	NA	Approved	DKFZP434B044	uc010voh.1	Q9H0B8	OTTHUMG00000137644	ENST00000262424.5:c.996C>T	16.37:g.84906612C>T		NA	D3DUM0|Q6P590|Q6UWH0|Q6UXC6|Q96IB1|Q96K61	37	CCDS10949.1																																																																																			CRISPLD2-001	KNOWN	basic|appris_principal|CCDS	protein_coding	NA	protein_coding	OTTHUMT00000269086.2		+	ENST00000262424.5	Silent	SNP	16 : 84906612 - 84906612 T PAAD-TCGA-IB-AAUV-Tumor-SM-5W7VH	462	6
DUSP13	51207	broad.mit.edu	37	10	76855494	76855494	+	Missense_Mutation	SNP	G	G	A			TCGA-IB-AAUV-01A-11D-A38G-08	TCGA-IB-AAUV-10A-01D-A38J-08	G	G	-	-	G	G	Unknown	Untested	Somatic	NA	WXS	none	NA	NA	Illumina HiSeq	a6ed3bc0-d0b9-4ab8-b0aa-f95c82c12cc7	2d3fe7a3-7260-43ff-8dc6-1ef945e51bd7	g.chr10:76855494G>A	ENST00000464872.1	-	2	232	c.233C>T	c.(232-234)gCc>gTc	p.A78V	DUSP13_ENST00000372702.3_3'UTR|DUSP13_ENST00000372700.3_Missense_Mutation_p.A128V|DUSP13_ENST00000491677.2_Missense_Mutation_p.A207V|DUSP13_ENST00000605915.1_Missense_Mutation_p.A100V|DUSP13_ENST00000607131.1_Missense_Mutation_p.A171V|DUSP13_ENST00000478873.2_Missense_Mutation_p.A214V|DUSP13_ENST00000472493.2_Missense_Mutation_p.A78V			Q6B8I1	MDSP_HUMAN	dual specificity phosphatase 13	70	Tyrosine-protein phosphatase.					cytoplasm	protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			large_intestine(3)|lung(3)|prostate(1)|urinary_tract(1)	8	all_cancers(46;0.0207)|all_epithelial(25;0.00126)|Prostate(51;0.0112)|Ovarian(15;0.0348)					GCCTGCAGCGGCATTCACAAC	0.577		NA												NA	NA	NA	NA	NA	NA	NA			NA	NA	NA	NA	NA	NA	NA		NA	NA	NA		NSCLC(174;1655 2059 12324 40663 42963)							NA				0													205	181	189			NA	NA	10		NA											NA				76855494		2203	4300	6503	SO:0001583	missense			AB027004	CCDS7346.1, CCDS31224.1, CCDS53542.1	10q23.1	2013-10-25			ENSG00000079393	ENSG00000079393	NA	51207		Protein tyrosine phosphatases / Class I Cys-based PTPs : Atypical dual specificity phosphatases	19681	protein-coding gene	gene with protein product		613191			NA	10585869	Standard		XM_005269883	NA	Approved	BEDP, TMDP, FLJ32450, DUSP13A, DUSP13B	uc001jwu.3	Q6B8I1	OTTHUMG00000018516	ENST00000464872.1:c.233C>T	10.37:g.76855494G>A	ENSP00000434041:p.Ala78Val	NA	Q96J67	37		.	.	.	.	.	.	.	.	.	.	G	8.989	0.977271	0.18812	.	.	ENSG00000079393	ENST00000308475;ENST00000472493;ENST00000491677;ENST00000372698;ENST00000464872;ENST00000372700	T;T;T;T;T	0.60548	0.42;0.42;0.42;0.18;0.42	5.11	-2.7	0.06004	Dual specificity phosphatase, catalytic domain (1);Dual specificity phosphatase, subgroup, catalytic domain (2);	0.348638	0.33235	N	0.005130	T	0.30947	0.0781	N	0.13198	0.31	0.31631	N	0.648985	B;P;P	0.41265	0.342;0.678;0.744	B;B;B	0.36534	0.092;0.137;0.227	T	0.48198	-0.9056	10	0.14656	T	0.56	-2.9419	12.3709	0.55254	0.2733:0.0:0.7267:0.0	.	128;207;78	Q9UII6-4;F2Z2C4;Q9UII6	.;.;DUS13_HUMAN	V	78;78;207;171;78;128	ENSP00000311051:A78V;ENSP00000444580:A78V;ENSP00000436312:A207V;ENSP00000434041:A78V;ENSP00000361785:A128V	ENSP00000311051:A78V	A	-	2	0	DUSP13	76525500	0.981000	0.34729	0.126000	0.21872	0.401000	0.30781	2.524000	0.45589	-0.319000	0.08652	-0.150000	0.13652	GCC	DUSP13-007	NOVEL	basic|exp_conf	protein_coding	NA	protein_coding	OTTHUMT00000048789.2		-	ENST00000464872.1	Missense_Mutation	SNP	10 : 76855494 - 76855494 A PAAD-TCGA-IB-AAUV-Tumor-SM-5W7VH	596	10
EFCAB12	90288	broad.mit.edu	37	3	129140359	129140359	+	Missense_Mutation	SNP	G	G	A			TCGA-IB-AAUV-01A-11D-A38G-08	TCGA-IB-AAUV-10A-01D-A38J-08	G	G	-	-	G	G	Unknown	Untested	Somatic	NA	WXS	none	NA	NA	Illumina HiSeq	a6ed3bc0-d0b9-4ab8-b0aa-f95c82c12cc7	2d3fe7a3-7260-43ff-8dc6-1ef945e51bd7	g.chr3:129140359G>A	ENST00000505956.1	-	2	499	c.337C>T	c.(337-339)Cgg>Tgg	p.R113W	EFCAB12_ENST00000326085.3_Missense_Mutation_p.R113W	NM_207307.1	NP_997190.1			EF-hand calcium binding domain 12	NA											NA						AGCTCCTGCCGCAGCTTCGAC	0.552		NA												NA	NA	NA	NA	NA	NA	NA			NA	NA	NA	NA	NA	NA	NA		NA	NA	NA									NA				0								G	TRP/ARG	3,4009		0,3,2003	94	93	93		337	3.1	0	3		93	0,8360		0,0,4180	yes	missense	C3orf25	NM_207307.1	101	0,3,6183	AA,AG,GG	NA	0.0,0.0748,0.0242	probably-damaging	113/573	129140359	3,12369	2006	4180	6186	SO:0001583	missense			AK096099	CCDS54638.1	3q21.3	2013-01-10	2012-07-20	2012-07-20	ENSG00000172771	ENSG00000172771	90288	90288		EF-hand domain containing	28061	protein-coding gene	gene with protein product			chromosome 3 open reading frame 25	C3orf25	NA		Standard	NM_207307	NM_207307	NA	Approved		uc003emg.3	Q6NXP0	OTTHUMG00000159464	ENST00000505956.1:c.337C>T	3.37:g.129140359G>A	ENSP00000420854:p.Arg113Trp	NA		37	CCDS54638.1	.	.	.	.	.	.	.	.	.	.	G	15.38	2.817157	0.50633	7.48E-4	0.0	ENSG00000172771	ENST00000505956;ENST00000326085	T;T	0.19250	2.16;2.16	3.97	3.06	0.35304	.	0.811674	0.10331	N	0.687513	T	0.33206	0.0855	L	0.34521	1.04	0.09310	N	1	D	0.89917	1.0	D	0.80764	0.994	T	0.12477	-1.0546	10	0.87932	D	0	-34.2827	8.6439	0.33994	0.0:0.0:0.7449:0.2551	.	113	Q6NXP0	CC025_HUMAN	W	113	ENSP00000420854:R113W;ENSP00000324241:R113W	ENSP00000324241:R113W	R	-	1	2	C3orf25	130623049	0.082000	0.21442	0.028000	0.17463	0.074000	0.17049	0.879000	0.28146	1.176000	0.42840	0.655000	0.94253	CGG	EFCAB12-001	KNOWN	basic|appris_principal|CCDS	protein_coding	NA	protein_coding	OTTHUMT00000355530.1		-	ENST00000505956.1	Missense_Mutation	SNP	3 : 129140359 - 129140359 A PAAD-TCGA-IB-AAUV-Tumor-SM-5W7VH	187	4
HSPE1	3336	broad.mit.edu	37	2	198367975	198367975	+	Missense_Mutation	SNP	G	G	A			TCGA-IB-AAUV-01A-11D-A38G-08	TCGA-IB-AAUV-10A-01D-A38J-08	G	G	-	-	G	G	Unknown	Untested	Somatic	NA	WXS	none	NA	NA	Illumina HiSeq	a6ed3bc0-d0b9-4ab8-b0aa-f95c82c12cc7	2d3fe7a3-7260-43ff-8dc6-1ef945e51bd7	g.chr2:198367975G>A	ENST00000409729.1	+	3	433	c.136G>A	c.(136-138)Gta>Ata	p.V46I	HSPE1_ENST00000409468.1_3'UTR|HSPE1_ENST00000233893.5_Missense_Mutation_p.V101I|HSPE1-MOB4_ENST00000604458.1_Intron|HSPE1_ENST00000465573.1_3'UTR					heat shock 10kDa protein 1	NA										lung(1)	1			Epithelial(96;0.225)			TGGAAAGTACGTAGACTGAAA	0.328		NA												NA	NA	NA	NA	NA	NA	NA			NA	NA	NA	NA	NA	NA	NA		NA	NA	NA									NA				0													118	123	121			NA	NA	2		NA											NA				198367975		2203	4299	6502	SO:0001583	missense			AF109872	CCDS2320.1	2q33.1	2013-10-17	2013-10-17		ENSG00000115541	ENSG00000115541	3336	3336		Heat Shock Proteins / Chaperonins	5269	protein-coding gene	gene with protein product	chaperonin 10	600141	heat shock 10kD protein 1 (chaperonin 10)		NA	7914093, 7698325	Standard	NM_002157	NM_002157	NA	Approved	CPN10, GROES		P61604	OTTHUMG00000132749	ENST00000409729.1:c.136G>A	2.37:g.198367975G>A	ENSP00000387101:p.Val46Ile	NA		37		.	.	.	.	.	.	.	.	.	.	G	11.22	1.575327	0.28092	.	.	ENSG00000115541	ENST00000233893;ENST00000409729	.	.	.	5.1	0.0917	0.14469	GroES-like (1);	0.525107	0.18667	N	0.134546	T	0.39860	0.1094	L	0.39397	1.21	0.80722	D	1	B	0.09022	0.002	B	0.09377	0.004	T	0.10314	-1.0635	9	0.36615	T	0.2	-4.7243	3.4473	0.07484	0.1357:0.1774:0.4574:0.2295	.	101	P61604	CH10_HUMAN	I	101;46	.	ENSP00000233893:V101I	V	+	1	0	HSPE1	198076220	0.991000	0.36638	0.910000	0.35882	0.821000	0.46438	2.144000	0.42197	-0.035000	0.13691	-1.268000	0.01426	GTA	HSPE1-002	NOVEL	basic|exp_conf	protein_coding	NA	protein_coding	OTTHUMT00000335336.1		+	ENST00000409729.1	Missense_Mutation	SNP	2 : 198367975 - 198367975 A PAAD-TCGA-IB-AAUV-Tumor-SM-5W7VH	448	7
IL17B	27190	broad.mit.edu	37	5	148756445	148756445	+	Silent	SNP	C	C	T			TCGA-IB-AAUV-01A-11D-A38G-08	TCGA-IB-AAUV-10A-01D-A38J-08	C	C	-	-	C	C	Unknown	Untested	Somatic	NA	WXS	none	NA	NA	Illumina HiSeq	a6ed3bc0-d0b9-4ab8-b0aa-f95c82c12cc7	2d3fe7a3-7260-43ff-8dc6-1ef945e51bd7	g.chr5:148756445C>T	ENST00000261796.3	-	2	215	c.165G>A	c.(163-165)ccG>ccA	p.P55P	IL17B_ENST00000505432.1_5'UTR	NM_014443.2	NP_055258.1	Q9UHF5	IL17B_HUMAN	interleukin 17B	55					cell-cell signaling|immune response|inflammatory response	extracellular space	cytokine activity|signal transducer activity			breast(1)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|lung(3)|prostate(1)|urinary_tract(1)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCGGGCATACGGTTTCATCC	0.622		NA												NA	NA	NA	NA	NA	NA	NA			NA	NA	NA	NA	NA	NA	NA		NA	NA	NA									NA				0								C		0,4406		0,0,2203	105	99	101		165	-9.9	0	5		101	1,8599	1.2+/-3.3	0,1,4299	no	coding-synonymous	IL17B	NM_014443.2		0,1,6502	TT,TC,CC	NA	0.0116,0.0,0.0077		55/181	148756445	1,13005	2203	4300	6503	SO:0001819	synonymous_variant			AF184969	CCDS4297.1	5q33.1	2011-07-14			ENSG00000127743	ENSG00000127743	27190	27190		Interleukins and interleukin receptors	5982	protein-coding gene	gene with protein product	neuronal interleukin-17-related factor	604627			NA	10639155	Standard	NM_014443	NM_014443	NA	Approved	IL-17B, ZCYTO7, IL-20, MGC138900, MGC138901, NIRF	uc003lqo.3	Q9UHF5	OTTHUMG00000130051	ENST00000261796.3:c.165G>A	5.37:g.148756445C>T		NA	Q14CE5	37	CCDS4297.1																																																																																			IL17B-001	KNOWN	basic|appris_principal|CCDS	protein_coding	NA	protein_coding	OTTHUMT00000252330.1		-	ENST00000261796.3	Silent	SNP	5 : 148756445 - 148756445 T PAAD-TCGA-IB-AAUV-Tumor-SM-5W7VH	344	6
MAPK8IP2	23542	broad.mit.edu	37	22	51045410	51045410	+	Missense_Mutation	SNP	G	G	A			TCGA-IB-AAUV-01A-11D-A38G-08	TCGA-IB-AAUV-10A-01D-A38J-08	G	G	-	-	G	G	Unknown	Untested	Somatic	NA	WXS	none	NA	NA	Illumina HiSeq	a6ed3bc0-d0b9-4ab8-b0aa-f95c82c12cc7	2d3fe7a3-7260-43ff-8dc6-1ef945e51bd7	g.chr22:51045410G>A	ENST00000399908.2	+	8	2212	c.1496G>A	c.(1495-1497)cGc>cAc	p.R499H	MAPK8IP2_ENST00000442429.2_Missense_Mutation_p.R487H|MAPK8IP2_ENST00000399912.1_Missense_Mutation_p.R499H|MAPK8IP2_ENST00000008876.5_Missense_Mutation_p.R470H|MAPK8IP2_ENST00000329492.3_Missense_Mutation_p.R764H|MAPK8IP2_ENST00000341339.4_Missense_Mutation_p.R385H	NM_016431.3	NP_057515.1	Q13387	JIP2_HUMAN	mitogen-activated protein kinase 8 interacting protein 2	765					behavioral fear response|dendrite morphogenesis|MAPKKK cascade|nonassociative learning|positive regulation of anti-apoptosis|regulation of excitatory postsynaptic membrane potential|regulation of JNK cascade|regulation of receptor activity|regulation of synaptic transmission, glutamatergic|signal complex assembly|social behavior	cytoplasm|postsynaptic density	beta-amyloid binding|kinesin binding|MAP-kinase scaffold activity|protein kinase activator activity|protein kinase binding			central_nervous_system(1)|endometrium(1)|kidney(1)|large_intestine(2)|lung(2)	7		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		OV - Ovarian serous cystadenocarcinoma(4;1.28e-70)|Epithelial(4;3.46e-65)|GBM - Glioblastoma multiforme(4;4.83e-06)|Lung(4;0.125)|BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		TGCCATCCCCGCAACAGCTGG	0.612		NA												NA	NA	NA	NA	NA	NA	NA			NA	NA	NA	NA	NA	NA	NA		NA	NA	NA									NA				0													67	72	70			NA	NA	22		NA											NA				51045410		2080	4211	6291	SO:0001583	missense			AL021708	CCDS74886.1	22q13.33	2010-04-06			ENSG00000008735	ENSG00000008735	23542	23542			6883	protein-coding gene	gene with protein product	islet-brain 2, JNK-interacting protein 2	607755	PRKM8 interacting protein-like	PRKM8IPL	NA	10490659	Standard	NM_012324	NM_012324	NA	Approved	IB2, JIP2	uc003bmy.3	Q13387	OTTHUMG00000150181	ENST00000399908.2:c.1496G>A	22.37:g.51045410G>A	ENSP00000382792:p.Arg499His	NA	Q96G62|Q99771|Q9NZ59|Q9UKQ4	37		.	.	.	.	.	.	.	.	.	.	G	19.23	3.787841	0.70337	.	.	ENSG00000008735	ENST00000399912;ENST00000329492;ENST00000442429;ENST00000341339;ENST00000399908;ENST00000008876	T;T;T;T;T;T	0.19105	2.51;2.51;2.51;2.51;2.51;2.17	4.42	4.42	0.53409	Phosphotyrosine interaction domain (3);Pleckstrin homology-type (1);	0.055392	0.64402	D	0.000002	T	0.47173	0.1431	.	.	.	0.48632	D	0.999683	D;D	0.89917	1.0;1.0	D;D	0.75484	0.986;0.986	T	0.52555	-0.8560	9	0.87932	D	0	-12.3719	14.5639	0.68162	0.0:0.0:1.0:0.0	.	737;765	E7EQG6;Q13387	.;JIP2_HUMAN	H	499;764;487;385;499;470	ENSP00000382796:R499H;ENSP00000330572:R764H;ENSP00000404914:R487H;ENSP00000340015:R385H;ENSP00000382792:R499H;ENSP00000008876:R470H	ENSP00000008876:R470H	R	+	2	0	MAPK8IP2	49392276	1.000000	0.71417	1.000000	0.80357	0.628000	0.37860	3.743000	0.55104	2.276000	0.75962	0.462000	0.41574	CGC	MAPK8IP2-002	KNOWN	basic	protein_coding	NA	protein_coding	OTTHUMT00000316731.2		+	ENST00000399908.2	Missense_Mutation	SNP	22 : 51045410 - 51045410 A PAAD-TCGA-IB-AAUV-Tumor-SM-5W7VH	296	5
MUC17	140453	broad.mit.edu	37	7	100680623	100680623	+	Missense_Mutation	SNP	C	C	T			TCGA-IB-AAUV-01A-11D-A38G-08	TCGA-IB-AAUV-10A-01D-A38J-08	C	C	-	-	C	C	Unknown	Untested	Somatic	NA	WXS	none	NA	NA	Illumina HiSeq	a6ed3bc0-d0b9-4ab8-b0aa-f95c82c12cc7	2d3fe7a3-7260-43ff-8dc6-1ef945e51bd7	g.chr7:100680623C>T	ENST00000306151.4	+	3	5990	c.5926C>T	c.(5926-5928)Cca>Tca	p.P1976S		NM_001040105.1	NP_001035194.1	Q685J3	MUC17_HUMAN	mucin 17, cell surface associated	1976	59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			NS(3)|breast(14)|central_nervous_system(2)|cervix(2)|endometrium(27)|haematopoietic_and_lymphoid_tissue(2)|kidney(18)|large_intestine(28)|lung(179)|ovary(19)|pancreas(1)|prostate(13)|skin(26)|stomach(2)|upper_aerodigestive_tract(3)|urinary_tract(4)	343	Lung NSC(181;0.136)|all_lung(186;0.182)					TACCAGCATGCCAACCCCAGC	0.498		NA												NA	NA	NA	NA	NA	NA	NA			NA	NA	NA	NA	NA	NA	NA		NA	NA	NA									NA				0													276	267	270			NA	NA	7		NA											NA				100680623		2203	4300	6503	SO:0001583	missense			AJ606307	CCDS34711.1	7q22	2007-01-17	2006-03-14		ENSG00000169876	ENSG00000169876	140453	140453		Mucins	16800	protein-coding gene	gene with protein product		608424			NA	11855812	Standard	NM_001040105	NM_001040105	NA	Approved		uc003uxp.1	Q685J3	OTTHUMG00000157030	ENST00000306151.4:c.5926C>T	7.37:g.100680623C>T	ENSP00000302716:p.Pro1976Ser	NA	O14761|Q685J2|Q8TDH7	37	CCDS34711.1	.	.	.	.	.	.	.	.	.	.	C	2.947	-0.217494	0.06101	.	.	ENSG00000169876	ENST00000306151	T	0.03152	4.03	0.512	0.512	0.16994	.	.	.	.	.	T	0.04497	0.0123	N	0.08118	0	0.09310	N	1	D	0.76494	0.999	D	0.68621	0.959	T	0.48647	-0.9017	9	0.16420	T	0.52	.	6.9006	0.24281	0.0:0.9998:0.0:2.0E-4	.	1976	Q685J3	MUC17_HUMAN	S	1976	ENSP00000302716:P1976S	ENSP00000302716:P1976S	P	+	1	0	MUC17	100467343	0.000000	0.05858	0.007000	0.13788	0.006000	0.05464	-1.589000	0.02104	0.551000	0.29008	0.134000	0.15878	CCA	MUC17-001	KNOWN	basic|appris_principal|CCDS	protein_coding	NA	protein_coding	OTTHUMT00000347161.1		+	ENST00000306151.4	Missense_Mutation	SNP	7 : 100680623 - 100680623 T PAAD-TCGA-IB-AAUV-Tumor-SM-5W7VH	1311	8
OR10H2	26538	broad.mit.edu	37	19	15839311	15839311	+	Missense_Mutation	SNP	C	C	T	rs139469467		TCGA-IB-AAUV-01A-11D-A38G-08	TCGA-IB-AAUV-10A-01D-A38J-08	C	C	-	-	C	C	Unknown	Untested	Somatic	NA	WXS	none	NA	NA	Illumina HiSeq	a6ed3bc0-d0b9-4ab8-b0aa-f95c82c12cc7	2d3fe7a3-7260-43ff-8dc6-1ef945e51bd7	g.chr19:15839311C>T	ENST00000305899.3	+	1	478	c.458C>T	c.(457-459)tCg>tTg	p.S153L		NM_013939.2	NP_039227.1	O60403	O10H2_HUMAN	olfactory receptor, family 10, subfamily H, member 2	153					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(2)|central_nervous_system(1)|endometrium(1)|kidney(1)|large_intestine(6)|lung(10)|ovary(2)|skin(3)|stomach(1)	27	all_hematologic(1;0.0517)|Acute lymphoblastic leukemia(2;0.074)					GCTGGTGGCTCGGTCATGGGG	0.592		NA												NA	NA	NA	NA	NA	NA	NA			NA	NA	NA	NA	NA	NA	NA		NA	NA	NA									NA				0													91	75	81			NA	NA	19		NA											NA				15839311		2203	4300	6503	SO:0001583	missense			AC004597	CCDS12333.1	19p13.1	2012-08-09				ENSG00000171942	26538	26538		GPCR / Class A : Olfactory receptors	8173	protein-coding gene	gene with protein product					NA		Standard		NM_013939	NA	Approved		uc002nbm.2	O60403		ENST00000305899.3:c.458C>T	19.37:g.15839311C>T	ENSP00000306095:p.Ser153Leu	NA	Q6IFQ1|Q96R58	37	CCDS12333.1	.	.	.	.	.	.	.	.	.	.	.	0.360	-0.939686	0.02322	.	.	ENSG00000171942	ENST00000305899	T	0.00019	9.06	3.4	-2.39	0.06602	GPCR, rhodopsin-like superfamily (1);	1.096810	0.07137	N	0.846687	T	0.00039	0.0001	N	0.02973	-0.45	0.09310	N	1	B	0.12630	0.006	B	0.19946	0.027	T	0.00510	-1.1697	10	0.10902	T	0.67	.	6.8361	0.23937	0.0:0.2906:0.0:0.7094	.	153	O60403	O10H2_HUMAN	L	153	ENSP00000306095:S153L	ENSP00000306095:S153L	S	+	2	0	OR10H2	15700311	0.000000	0.05858	0.002000	0.10522	0.174000	0.22865	-0.238000	0.08977	-0.296000	0.08947	0.537000	0.68136	TCG	OR10H2-001	KNOWN	basic|appris_principal|CCDS	protein_coding	NA	protein_coding	OTTHUMT00000460917.1		+	ENST00000305899.3	Missense_Mutation	SNP	19 : 15839311 - 15839311 T PAAD-TCGA-IB-AAUV-Tumor-SM-5W7VH	252	5
RTTN	25914	broad.mit.edu	37	18	67794755	67794755	+	Missense_Mutation	SNP	C	C	A			TCGA-IB-AAUV-01A-11D-A38G-08	TCGA-IB-AAUV-10A-01D-A38J-08	C	C	-	-	C	C	Unknown	Untested	Somatic	NA	WXS	none	NA	NA	Illumina HiSeq	a6ed3bc0-d0b9-4ab8-b0aa-f95c82c12cc7	2d3fe7a3-7260-43ff-8dc6-1ef945e51bd7	g.chr18:67794755C>A	ENST00000255674.6	-	25	3652	c.3366G>T	c.(3364-3366)tgG>tgT	p.W1122C	RTTN_ENST00000454359.1_3'UTR|RTTN_ENST00000437017.1_Missense_Mutation_p.W1122C	NM_173630.3	NP_775901.3	Q86VV8	RTTN_HUMAN	rotatin	1122							binding			NS(1)|breast(3)|central_nervous_system(2)|endometrium(11)|haematopoietic_and_lymphoid_tissue(2)|kidney(5)|large_intestine(9)|lung(35)|ovary(4)|pancreas(2)|prostate(1)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(1)	80		Esophageal squamous(42;0.129)				GTGCGGTGTGCCAAGCCAAGG	0.463		NA												NA	NA	NA	NA	NA	NA	NA			NA	NA	NA	NA	NA	NA	NA		NA	NA	NA									NA				0													63	59	60			NA	NA	18		NA											NA				67794755		1977	4143	6120	SO:0001583	missense			AL117635	CCDS42443.1	18q22.1	2008-08-01				ENSG00000176225	25914	25914			18654	protein-coding gene	gene with protein product		610436			NA	11900971	Standard	NM_173630	NM_173630	NA	Approved	DKFZP434G145	uc002lkp.2	Q86VV8		ENST00000255674.6:c.3366G>T	18.37:g.67794755C>A	ENSP00000255674:p.Trp1122Cys	NA	Q68CS9|Q6ZRL8|Q6ZTK3|Q86TG4|Q8N8N8|Q8TBQ4|Q96IN9|Q9UFJ4	37	CCDS42443.1	.	.	.	.	.	.	.	.	.	.	C	19.51	3.840728	0.71488	.	.	ENSG00000176225	ENST00000255674;ENST00000437017	T;T	0.23950	1.88;1.88	5.46	5.46	0.80206	.	0.000000	0.85682	D	0.000000	T	0.53433	0.1796	M	0.70275	2.135	0.80722	D	1	D	0.89917	1.0	D	0.91635	0.999	T	0.55717	-0.8097	10	0.87932	D	0	.	19.3103	0.94184	0.0:1.0:0.0:0.0	.	1122	Q86VV8	RTTN_HUMAN	C	1122	ENSP00000255674:W1122C;ENSP00000399520:W1122C	ENSP00000255674:W1122C	W	-	3	0	RTTN	65945735	1.000000	0.71417	1.000000	0.80357	0.857000	0.48899	4.414000	0.59802	2.558000	0.86282	0.650000	0.86243	TGG	RTTN-001	KNOWN	basic|appris_principal|CCDS	protein_coding	NA	protein_coding	OTTHUMT00000442988.1		-	ENST00000255674.6	Missense_Mutation	SNP	18 : 67794755 - 67794755 A PAAD-TCGA-IB-AAUV-Tumor-SM-5W7VH	168	4
RYR3	6263	broad.mit.edu	37	15	33955010	33955010	+	Missense_Mutation	SNP	C	C	T			TCGA-IB-AAUV-01A-11D-A38G-08	TCGA-IB-AAUV-10A-01D-A38J-08	C	C	-	-	C	C	Unknown	Untested	Somatic	NA	WXS	none	NA	NA	Illumina HiSeq	a6ed3bc0-d0b9-4ab8-b0aa-f95c82c12cc7	2d3fe7a3-7260-43ff-8dc6-1ef945e51bd7	g.chr15:33955010C>T	ENST00000389232.4	+	35	5349	c.5279C>T	c.(5278-5280)gCg>gTg	p.A1760V	RYR3_ENST00000415757.3_Missense_Mutation_p.A1760V	NM_001036.3	NP_001027.3	Q15413	RYR3_HUMAN	ryanodine receptor 3	1760	4 X approximate repeats.				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			NS(3)|breast(9)|central_nervous_system(8)|cervix(2)|endometrium(29)|haematopoietic_and_lymphoid_tissue(2)|kidney(18)|large_intestine(55)|lung(148)|ovary(7)|pancreas(1)|prostate(13)|skin(4)|stomach(1)|upper_aerodigestive_tract(8)|urinary_tract(3)	311		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		GAGCATAGTGCGGGGACAGAG	0.567		NA												NA	NA	NA	NA	NA	NA	NA			NA	NA	NA	NA	NA	NA	NA		NA	NA	NA									NA				0													140	150	147			NA	NA	15		NA											NA				33955010		2056	4213	6269	SO:0001583	missense				CCDS45210.1, CCDS58351.1	15q14-q15	2013-01-10				ENSG00000198838	6263	6263		Ion channels / Ryanodine receptors, EF-hand domain containing	10485	protein-coding gene	gene with protein product		180903			NA	8276408	Standard		NM_001036	NA	Approved		uc001zhi.3	Q15413		ENST00000389232.4:c.5279C>T	15.37:g.33955010C>T	ENSP00000373884:p.Ala1760Val	NA	O15175|Q15412	37	CCDS45210.1	.	.	.	.	.	.	.	.	.	.	C	2.462	-0.323806	0.05350	.	.	ENSG00000198838	ENST00000389232;ENST00000415757;ENST00000361728	T;T	0.72282	-0.64;-0.64	5.11	-1.47	0.08772	.	0.629031	0.15845	N	0.241811	T	0.54679	0.1873	L	0.29908	0.895	0.09310	N	0.999997	B;B	0.13145	0.007;0.003	B;B	0.06405	0.002;0.001	T	0.44174	-0.9345	10	0.36615	T	0.2	.	12.3264	0.55013	0.0921:0.628:0.2798:0.0	.	1760;1760	Q15413-2;Q15413	.;RYR3_HUMAN	V	1760	ENSP00000373884:A1760V;ENSP00000399610:A1760V	ENSP00000354735:A1760V	A	+	2	0	RYR3	31742302	0.129000	0.22400	0.001000	0.08648	0.014000	0.08584	0.478000	0.22212	-0.100000	0.12241	-0.165000	0.13383	GCG	RYR3-001	KNOWN	basic|appris_candidate_longest|CCDS	protein_coding	NA	protein_coding	OTTHUMT00000417514.1		+	ENST00000389232.4	Missense_Mutation	SNP	15 : 33955010 - 33955010 T PAAD-TCGA-IB-AAUV-Tumor-SM-5W7VH	289	5
SLC12A2	6558	broad.mit.edu	37	5	127448571	127448571	+	Silent	SNP	G	G	A			TCGA-IB-AAUV-01A-11D-A38G-08	TCGA-IB-AAUV-10A-01D-A38J-08	G	G	-	-	G	G	Unknown	Untested	Somatic	NA	WXS	none	NA	NA	Illumina HiSeq	a6ed3bc0-d0b9-4ab8-b0aa-f95c82c12cc7	2d3fe7a3-7260-43ff-8dc6-1ef945e51bd7	g.chr5:127448571G>A	ENST00000262461.2	+	2	1011	c.822G>A	c.(820-822)acG>acA	p.T274T	SLC12A2_ENST00000343225.4_Silent_p.T274T	NM_001046.2	NP_001037.1	P55011	S12A2_HUMAN	solute carrier family 12 (sodium/potassium/chloride transporter), member 2	274					potassium ion transport|sodium ion transport|transepithelial ammonium transport|transepithelial chloride transport	integral to plasma membrane|membrane fraction	ammonia transmembrane transporter activity|sodium:potassium:chloride symporter activity			breast(3)|endometrium(5)|kidney(5)|large_intestine(12)|lung(16)|ovary(3)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	48		all_cancers(142;0.0972)|Prostate(80;0.151)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	Epithelial(69;0.0433)|OV - Ovarian serous cystadenocarcinoma(64;0.0978)	Bumetanide(DB00887)|Potassium Chloride(DB00761)	CTGTGGTCACGTATACTGCAG	0.368		NA												NA	NA	NA	NA	NA	NA	NA			NA	NA	NA	NA	NA	NA	NA		NA	NA	NA									NA				0													127	123	124			NA	NA	5		NA											NA				127448571		2203	4300	6503	SO:0001819	synonymous_variant				CCDS4144.1, CCDS58965.1	5q23.3	2014-06-13	2013-07-18		ENSG00000064651	ENSG00000064651	6558	6558		Solute carriers	10911	protein-coding gene	gene with protein product	bumetanide-sensitive sodium-(potassium)-chloride cotransporter 1, basolateral Na-K-Cl symporter, protein phosphatase 1, regulatory subunit 141	600840			NA	7629105	Standard	NM_001046	NM_001256461	NA	Approved	NKCC1, BSC, BSC2, PPP1R141	uc003kus.3	P55011	OTTHUMG00000128983	ENST00000262461.2:c.822G>A	5.37:g.127448571G>A		NA	Q8N713|Q8WWH7	37	CCDS4144.1																																																																																			SLC12A2-001	KNOWN	basic|appris_principal|CCDS	protein_coding	NA	protein_coding	OTTHUMT00000250972.1		+	ENST00000262461.2	Silent	SNP	5 : 127448571 - 127448571 A PAAD-TCGA-IB-AAUV-Tumor-SM-5W7VH	440	5
SLC35B2	347734	broad.mit.edu	37	6	44223293	44223293	+	Missense_Mutation	SNP	G	G	A			TCGA-IB-AAUV-01A-11D-A38G-08	TCGA-IB-AAUV-10A-01D-A38J-08	G	G	-	-	G	G	Unknown	Untested	Somatic	NA	WXS	none	NA	NA	Illumina HiSeq	a6ed3bc0-d0b9-4ab8-b0aa-f95c82c12cc7	2d3fe7a3-7260-43ff-8dc6-1ef945e51bd7	g.chr6:44223293G>A	ENST00000393810.1	-	0	437				SLC35B2_ENST00000538577.1_Missense_Mutation_p.T57M|SLC35B2_ENST00000537814.1_Missense_Mutation_p.T17M|SLC35B2_ENST00000495706.1_5'UTR|SLC35B2_ENST00000393812.3_Missense_Mutation_p.T150M			Q8TB61	S35B2_HUMAN	solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B2	NA					positive regulation of I-kappaB kinase/NF-kappaB cascade	Golgi membrane|integral to membrane	3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity|signal transducer activity			breast(1)|central_nervous_system(2)|kidney(3)|large_intestine(2)|lung(4)|ovary(2)|urinary_tract(1)	15	all_cancers(18;2e-05)|all_lung(25;0.00747)|Hepatocellular(11;0.00908)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			CTGCGAGTCCGTAAAGCGCTC	0.592		NA												NA	NA	NA	NA	NA	NA	NA			NA	NA	NA	NA	NA	NA	NA		NA	NA	NA									NA				0													93	91	92			NA	NA	6		NA											NA				44223293		2203	4300	6503	SO:0001624	3_prime_UTR_variant			AK075456	CCDS34462.1, CCDS69127.1, CCDS75462.1, CCDS75463.1	6p12.1-p11.21	2013-07-17	2013-07-17		ENSG00000157593	ENSG00000157593	347734	347734		Solute carriers	16872	protein-coding gene	gene with protein product		610788	solute carrier family 35, member B2		NA		Standard		NM_001286517	NA	Approved	UGTrel4	uc003oxd.3	Q8TB61	OTTHUMG00000014760	ENST00000393810.1:c.*9C>T	6.37:g.44223293G>A		NA	Q2VY06|Q53GA3|Q5T9W1|Q5T9W2|Q7Z2G3|Q8NBK6|Q96AR6	37		.	.	.	.	.	.	.	.	.	.	G	16.01	3.000048	0.54147	.	.	ENSG00000157593	ENST00000393812;ENST00000537814;ENST00000538577;ENST00000341553	T;T;T	0.31769	1.48;1.48;1.48	5.79	5.79	0.91817	.	0.287528	0.38058	N	0.001825	T	0.43366	0.1244	M	0.85041	2.73	0.30326	N	0.78713	D;P	0.76494	0.999;0.92	P;P	0.61275	0.886;0.629	T	0.52223	-0.8604	10	0.59425	D	0.04	-12.4886	10.0146	0.42008	0.0:0.1231:0.6893:0.1876	.	57;150	F5H7Y9;Q8TB61	.;S35B2_HUMAN	M	150;17;57;150	ENSP00000377401:T150M;ENSP00000440340:T17M;ENSP00000443845:T57M	ENSP00000342455:T150M	T	-	2	0	SLC35B2	44331271	0.973000	0.33851	0.977000	0.42913	0.812000	0.45895	1.874000	0.39568	2.750000	0.94351	0.561000	0.74099	ACG	SLC35B2-003	PUTATIVE	basic|exp_conf	protein_coding	NA	protein_coding	OTTHUMT00000040725.2		-	ENST00000393810.1	3'UTR	SNP	6 : 44223293 - 44223293 A PAAD-TCGA-IB-AAUV-Tumor-SM-5W7VH	317	5
TNIK	23043	broad.mit.edu	37	3	170884937	170884937	+	Missense_Mutation	SNP	C	C	T			TCGA-IB-AAUV-01A-11D-A38G-08	TCGA-IB-AAUV-10A-01D-A38J-08	C	C	-	-	C	C	Unknown	Untested	Somatic	NA	WXS	none	NA	NA	Illumina HiSeq	a6ed3bc0-d0b9-4ab8-b0aa-f95c82c12cc7	2d3fe7a3-7260-43ff-8dc6-1ef945e51bd7	g.chr3:170884937C>T	ENST00000436636.2	-	10	1240	c.896G>A	c.(895-897)cGc>cAc	p.R299H	TNIK_ENST00000357327.5_Missense_Mutation_p.R299H|TNIK_ENST00000538048.1_Missense_Mutation_p.R299H|TNIK_ENST00000369326.5_Missense_Mutation_p.R299H|TNIK_ENST00000460047.1_Missense_Mutation_p.R299H|TNIK_ENST00000488470.1_Missense_Mutation_p.R299H|TNIK_ENST00000475336.1_Missense_Mutation_p.R299H|TNIK_ENST00000470834.1_Missense_Mutation_p.R299H|TNIK_ENST00000284483.8_Missense_Mutation_p.R299H|TNIK_ENST00000341852.6_Missense_Mutation_p.R299H	NM_015028.2	NP_055843.1	Q9UKE5	TNIK_HUMAN	TRAF2 and NCK interacting kinase	299	Mediates interaction with NEDD4.				actin cytoskeleton reorganization|activation of JNKK activity|protein autophosphorylation|regulation of dendrite morphogenesis|Wnt receptor signaling pathway	cytoskeleton|nucleus|recycling endosome	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			cervix(2)|endometrium(6)|haematopoietic_and_lymphoid_tissue(2)|kidney(4)|large_intestine(14)|lung(22)|ovary(5)|pancreas(1)|prostate(4)|upper_aerodigestive_tract(2)	62	all_cancers(22;2.55e-19)|all_lung(20;2.22e-14)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)			GAGTTGAATGCGGACCTGTCG	0.428		NA												NA	NA	NA	NA	NA	NA	NA			NA	NA	NA	NA	NA	NA	NA		NA	NA	NA									NA				0													185	164	171			NA	NA	3		NA											NA				170884937		1913	4120	6033	SO:0001583	missense			AF172264	CCDS46956.1, CCDS54673.1, CCDS54674.1, CCDS54675.1, CCDS54676.1, CCDS54677.1, CCDS54678.1, CCDS54679.1	3q26.31	2008-01-23			ENSG00000154310	ENSG00000154310	23043	23043			30765	protein-coding gene	gene with protein product		610005			NA	9628581, 10521462	Standard	XM_039796	NR_027767	NA	Approved	KIAA0551	uc003fhh.2	Q9UKE5	OTTHUMG00000159036	ENST00000436636.2:c.896G>A	3.37:g.170884937C>T	ENSP00000399511:p.Arg299His	NA	A7E2A3|A8K4U1|D3DNQ6|O60298|Q8WUY7|Q9UKD8|Q9UKD9|Q9UKE0|Q9UKE1|Q9UKE2|Q9UKE3|Q9UKE4	37	CCDS46956.1	.	.	.	.	.	.	.	.	.	.	C	35	5.413727	0.96072	.	.	ENSG00000154310	ENST00000436636;ENST00000369326;ENST00000538048;ENST00000341852;ENST00000284483;ENST00000475336;ENST00000357327;ENST00000460047;ENST00000488470;ENST00000470834;ENST00000468757	D;D;D;D;D;D;D;D;D;D;D	0.85861	-2.04;-2.04;-2.04;-2.04;-2.04;-2.04;-2.04;-2.04;-2.04;-2.04;-2.04	5.33	5.33	0.75918	Protein kinase-like domain (1);	0.000000	0.85682	D	0.000000	D	0.92854	0.7727	M	0.80183	2.485	0.80722	D	1	P;D;D;D;D;D;D;D	0.89917	0.66;0.999;0.995;1.0;0.999;0.999;0.995;0.997	B;D;P;D;D;D;P;D	0.81914	0.236;0.981;0.873;0.995;0.981;0.981;0.873;0.958	D	0.93323	0.6694	10	0.72032	D	0.01	.	19.3798	0.94527	0.0:1.0:0.0:0.0	.	299;299;299;299;299;299;299;299	Q9UKE5-8;Q9UKE5-6;Q9UKE5-7;Q9UKE5-5;Q9UKE5-4;Q9UKE5-2;Q9UKE5-3;Q9UKE5	.;.;.;.;.;.;.;TNIK_HUMAN	H	299;299;299;299;299;299;299;299;299;299;273	ENSP00000399511:R299H;ENSP00000358332:R299H;ENSP00000443278:R299H;ENSP00000345352:R299H;ENSP00000284483:R299H;ENSP00000418156:R299H;ENSP00000349880:R299H;ENSP00000418916:R299H;ENSP00000418378:R299H;ENSP00000419990:R299H;ENSP00000417338:R273H	ENSP00000284483:R299H	R	-	2	0	TNIK	172367631	1.000000	0.71417	1.000000	0.80357	0.991000	0.79684	7.776000	0.85560	2.644000	0.89710	0.655000	0.94253	CGC	TNIK-001	KNOWN	basic|appris_candidate_longest|CCDS	protein_coding	NA	protein_coding	OTTHUMT00000352973.2		-	ENST00000436636.2	Missense_Mutation	SNP	3 : 170884937 - 170884937 T PAAD-TCGA-IB-AAUV-Tumor-SM-5W7VH	153	4
UGT2B17	7367	broad.mit.edu	37	4	69403349	69403349	+	Silent	SNP	C	C	T	rs146629248	byFrequency	TCGA-IB-AAUV-01A-11D-A38G-08	TCGA-IB-AAUV-10A-01D-A38J-08	C	C	-	-	C	C	Unknown	Untested	Somatic	NA	WXS	none	NA	NA	Illumina HiSeq	a6ed3bc0-d0b9-4ab8-b0aa-f95c82c12cc7	2d3fe7a3-7260-43ff-8dc6-1ef945e51bd7	g.chr4:69403349C>T	ENST00000317746.2	-	6	1629	c.1587G>A	c.(1585-1587)agG>agA	p.R529R		NM_001077.3	NP_001068.1	O75795	UDB17_HUMAN	UDP glucuronosyltransferase 2 family, polypeptide B17	529					steroid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity	p.R529R(2)		central_nervous_system(1)|endometrium(4)|kidney(1)|large_intestine(7)|lung(14)|ovary(2)|prostate(1)	30						ATAACTAATCCCTTTTCTTCT	0.408		NA												NA	NA	NA	NA	NA	NA	NA			NA	NA	NA	NA	NA	NA	NA		NA	NA	NA		Melanoma(18;649 833 28984 37818 38500)							NA				2	Substitution - coding silent(2)	lung(1)|endometrium(1)											82	79	80			NA	NA	4		NA											NA				69403349		2114	4002	6116	SO:0001819	synonymous_variant			U59209	CCDS3523.1	4q13	2008-02-05	2005-07-20		ENSG00000197888	ENSG00000197888	7367	7367		UDP glucuronosyltransferases	12547	protein-coding gene	gene with protein product		601903	UDP glycosyltransferase 2 family, polypeptide B17		NA	8798464	Standard	NM_001077	NM_001077	NA	Approved		uc021xov.1	O75795	OTTHUMG00000129305	ENST00000317746.2:c.1587G>A	4.37:g.69403349C>T		NA		37	CCDS3523.1																																																																																			UGT2B17-001	KNOWN	basic|appris_principal|CCDS	protein_coding	NA	protein_coding	OTTHUMT00000251436.1		-	ENST00000317746.2	Silent	SNP	4 : 69403349 - 69403349 T PAAD-TCGA-IB-AAUV-Tumor-SM-5W7VH	591	6
