Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
ARHGAP30	257106	hgsc.bcm.edu	37	1	161018593	161018595	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	ARHGAP30	NM_001025598	exon12	c.2217_2219del	p.739_740del	.	.	285.0	47.0	203.0	0.0	.	105	.	Pindel,Atlas-Indel
ND1	10625	hgsc.bcm.edu	37	MT	3643	3643	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	ENST00000361390	exon1	c.G337A	p.V113I	CTAGCCGTTTACT	.	11.0	5.0	18.0	0.0	.	.	.	Atlas-SNP
TTC13	79573	hgsc.bcm.edu	37	1	231075188	231075188	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_024525	exon8	c.C844A	p.Q282K	TAGGCTGGTTTTT	.	55.0	7.0	55.0	0.0	.	.	.	Atlas-SNP
GPR115	221393	hgsc.bcm.edu	37	6	47678504	47678504	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_153838	exon4	c.A182G	p.N61S	CTTCCAACTGCAG	.	193.0	22.0	184.0	0.0	.	.	.	Atlas-SNP
ZNF717	100131827	hgsc.bcm.edu	37	3	75786403	75786403	+	Missense_Mutation	SNP	A	A	T	rs76634974	byfrequency	TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	ZNF717,caecum,carcinoma,0,1	ZNF717	NM_001128223	exon5	c.T2371A	p.C791S	TCCTACATTCATC	.	35.0	3.0	18.0	0.0	0.200	0	1	Atlas-SNP
RHPN2	85415	hgsc.bcm.edu	37	19	33493842	33493842	+	Missense_Mutation	SNP	C	C	A	rs137892450	bycluster;byfrequency	TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	RHPN2,NS,neuroblastoma,0,1	RHPN2	NM_033103	exon8	c.G825T	p.M275I	GCTGAGCATGGCA	.	68.0	3.0	43.0	1.0	0.000	0	1	Atlas-SNP
SOCS1	8651	hgsc.bcm.edu	37	16	11348860	11348860	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_003745	exon2	c.G476T	p.R159L	ATGCGGCGCGGCG	.	31.0	5.0	10.0	0.0	.	.	.	Atlas-SNP
ARHGEF17	9828	hgsc.bcm.edu	37	11	73070882	73070882	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_014786	exon10	c.C4091T	p.A1364V	TAGGGGCATCCCA	.	107.0	24.0	115.0	0.0	.	.	.	Atlas-SNP
RTEL1-TNFRSF6B	100533107	hgsc.bcm.edu	37	20	62311958	62311958	+	RNA	SNP	G	G	T	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	.	.	.	.	GCCGGGGCTGGGG	.	36.0	12.0	27.0	0.0	.	.	.	Atlas-SNP
LRCH4	4034	hgsc.bcm.edu	37	7	100173407	100173407	+	Splice_Site	SNP	T	T	C	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_002319	exon18	c.1777-2A>G	.	TTTGGCTGGGGTG	.	171.0	26.0	156.0	0.0	.	.	.	Atlas-SNP
IL3RA	3563	hgsc.bcm.edu	37	X	1501338	1501338	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_002183	exon12	c.C1117G	p.Q373E	GAAGTACAGGTCG	.	481.0	74.0	498.0	0.0	.	.	.	Atlas-SNP
FOLR2	2350	hgsc.bcm.edu	37	11	71932007	71932007	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_001113535	exon3	c.C244G	p.H82D	TGGGACCACTGCG	.	96.0	14.0	88.0	0.0	.	.	.	Atlas-SNP
KRTAP5-4	387267	hgsc.bcm.edu	37	11	1643254	1643254	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	KRTAP5-4,NS,carcinoma,+2,6	KRTAP5-4	NM_001012709	exon1	c.T70C	p.C24R	AGCCACAGCCCCC	.	134.0	10.0	103.0	1.0	.	+2	6	Atlas-SNP
ADAD2	161931	hgsc.bcm.edu	37	16	84227812	84227812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_139174	exon2	c.G619A	p.A207T	ATCCCTGCTGTGG	.	78.0	12.0	73.0	0.0	.	.	.	Atlas-SNP
MSH5-SAPCD1	100532732	hgsc.bcm.edu	37	6	31729509	31729509	+	RNA	SNP	T	T	C	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	.	.	.	.	CTTCCCTTTTCTC	.	61.0	4.0	76.0	0.0	.	.	.	Atlas-SNP
NCOA3	8202	hgsc.bcm.edu	37	20	46264898	46264898	+	Silent	SNP	A	A	C	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_001174088	exon12	c.A1798C	p.R600R	AATAGCAGAGATC	.	119.0	18.0	117.0	0.0	.	.	.	Atlas-SNP
OR4A16	81327	hgsc.bcm.edu	37	11	55110739	55110739	+	Silent	SNP	G	G	A	rs78513473	bycluster;byfrequency	TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	OR4A16,NS,carcinoma,0,1	OR4A16	NM_001005274	exon1	c.G63A	p.V21V	TGATGTGAAAAAA	.	52.0	5.0	44.0	0.0	0.002	0	1	Atlas-SNP
KRAS	3845	hgsc.bcm.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	A	rs121913529	bycluster	TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	KRAS_ENST00000256078,NS,adenocarcinoma,0,25136	KRAS_ENST00000256078	NM_004985	exon2	c.G35T	p.G12V	ACGCCACCAGCTC	.	228.0	51.0	152.0	0.0	.	0	25136	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1093324	1093324	+	Missense_Mutation	SNP	G	G	A	rs201143282		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	MUC2_ENST00000441003,uveal_tract,malignant_melanoma,0,2	MUC2_ENST00000441003	NM_002457	exon30	c.G5143A	p.G1715S	CCCACCGGCACAC	.	41.0	4.0	33.0	2.0	.	0	2	Atlas-SNP
MYO16	23026	hgsc.bcm.edu	37	13	109318410	109318410	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	MYO16,NS,carcinoma,-2,1	MYO16	NM_001198950	exon2	c.A205G	p.R69G	CTGAAAAGGCTGA	.	65.0	3.0	78.0	0.0	.	-2	1	Atlas-SNP
FAM108A1	81926	hgsc.bcm.edu	37	19	1881263	1881263	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	FAM108A1,NS,carcinoma,0,2	FAM108A1	NM_031213	exon2	c.C303T	p.C101C	ATACATGCAGGAG	.	57.0	3.0	50.0	0.0	.	0	2	Atlas-SNP
CCDC14	64770	hgsc.bcm.edu	37	3	123665686	123665686	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_022757	exon7	c.T1186A	p.L396M	CCAACAAATATTT	.	294.0	51.0	252.0	0.0	.	.	.	Atlas-SNP
TUBB8	347688	hgsc.bcm.edu	37	10	93797	93797	+	Missense_Mutation	SNP	C	C	T	rs71485064		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	TUBB8,NS,carcinoma,0,1	TUBB8	NM_177987	exon4	c.G535A	p.V179M	CCACCACGGTGTC	.	78.0	6.0	90.0	2.0	1.000	0	1	Atlas-SNP
THAP7	80764	hgsc.bcm.edu	37	22	21354471	21354471	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	THAP7,trunk,malignant_melanoma,+1,1	THAP7	NM_030573	exon4	c.T628C	p.S210P	AGGGGGAGACTGG	.	70.0	5.0	59.0	1.0	.	+1	1	Atlas-SNP
OR4A16	81327	hgsc.bcm.edu	37	11	55110715	55110715	+	Silent	SNP	G	G	A	rs77981146	bycluster;byfrequency;by1000genomes	TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	OR4A16,NS,lymphoid_neoplasm,0,1	OR4A16	NM_001005274	exon1	c.G39A	p.L13L	CCTCCTGGGCCTC	.	35.0	4.0	45.0	0.0	0.006	0	1	Atlas-SNP
PIK3CD	5293	hgsc.bcm.edu	37	1	9779982	9779982	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_005026	exon10	c.T1246C	p.C416R	CAGGACTGCCCCA	.	149.0	33.0	155.0	0.0	.	.	.	Atlas-SNP
