Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
TUBGCP6	85378	hgsc.bcm.edu	37	22	50656427	50656428	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	TUBGCP6	NM_020461	exon24	c.5288_5289insC	p.R1763fs	.	.	47.0	10.0	39.0	0.0	.	132	.	Atlas-Indel
OBSCN	84033	hgsc.bcm.edu	37	1	228554833	228554843	+	Frame_Shift_Del	DEL	GACCAGTTTGA	GACCAGTTTGA	-	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	GACCAGTTTGA	GACCAGTTTGA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	OBSCN	NM_001271223	exon97	c.22455_22465del	p.7485_7489del	.	.	188.0	14.0	161.0	0.0	.	2142	.	Atlas-Indel
PRH1-PRR4	0	hgsc.bcm.edu	37	12	11243718	11243718	+	RNA	SNP	T	T	C	rs200560394	bycluster	TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	.	.	.	.	CACATATATATAT	.	19.0	5.0	6.0	0.0	.	.	.	Atlas-SNP
MIR548F1	100302192	hgsc.bcm.edu	37	1	186064858	186064858	+	RNA	SNP	A	A	C	rs61831302	bycluster;by1000genomes	TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	.	.	.	.	CTCTGAAAAGATG	.	13.0	9.0	6.0	0.0	0.230	.	.	Atlas-SNP
COL6A5	256076	hgsc.bcm.edu	37	3	130110226	130110226	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	COL6A5,NS,carcinoma,+1,1	COL6A5	NM_153264	exon7	c.G2621C	p.R874T	CGAACAGATCAGC	.	475.0	88.0	414.0	0.0	.	+1	1	Atlas-SNP
KCNT1	57582	hgsc.bcm.edu	37	9	138662153	138662153	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	KCNT1,NS,carcinoma,+1,1	KCNT1	NM_020822	exon17	c.G1629A	p.Q543Q	GGGACAGGAGTCT	.	58.0	9.0	61.0	0.0	.	+1	1	Atlas-SNP
POPDC2	64091	hgsc.bcm.edu	37	3	119378799	119378799	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_022135	exon1	c.T472G	p.S158A	GCAGGGACAGGCG	.	114.0	11.0	113.0	0.0	.	.	.	Atlas-SNP
SCRN1	9805	hgsc.bcm.edu	37	7	29994942	29994942	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_001145514	exon3	c.C254T	p.T85I	GCATAGGTCCTTG	.	156.0	19.0	117.0	0.0	.	.	.	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1092970	1092970	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	MUC2_ENST00000441003,NS,carcinoma,-1,1	MUC2_ENST00000441003	NM_002457	exon30	c.A4789C	p.T1597P	ACCCCAACACCCA	.	37.0	3.0	51.0	1.0	.	-1	1	Atlas-SNP
STAU1	6780	hgsc.bcm.edu	37	20	47782664	47782664	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_017453	exon3	c.G75C	p.Q25H	AAGAGACTGGTTC	.	139.0	28.0	113.0	0.0	.	.	.	Atlas-SNP
CFH	3075	hgsc.bcm.edu	37	1	196709833	196709833	+	Missense_Mutation	SNP	C	C	T	rs145975787	bycluster;byfrequency;by1000genomes	TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_000186	exon18	c.C2867T	p.T956M	AAGTTACGTACAA	.	332.0	34.0	327.0	0.0	0.001	.	.	Atlas-SNP
DPCR1	135656	hgsc.bcm.edu	37	6	30919139	30919139	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_080870	exon2	c.A2898G	p.E966E	TGGAGAAACGACA	.	69.0	14.0	72.0	0.0	.	.	.	Atlas-SNP
GCN1L1	10985	hgsc.bcm.edu	37	12	120616506	120616506	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_006836	exon7	c.G582T	p.Q194H	ATAGTTCTGGTTG	.	237.0	44.0	167.0	0.0	.	.	.	Atlas-SNP
PRRT2	112476	hgsc.bcm.edu	37	16	29825015	29825015	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	PRRT2,caecum,carcinoma,0,2	PRRT2	NM_001256442	exon2	c.G640C	p.A214P	AATGGGGCCCCCC	.	202.0	9.0	155.0	2.0	.	0	2	Atlas-SNP
SMPD1	6609	hgsc.bcm.edu	37	11	6411972	6411972	+	Silent	SNP	T	T	G	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	SMPD1_ENST00000342245,colon,carcinoma,+1,2	SMPD1_ENST00000342245	NM_000543	exon1	c.T144G	p.A48A	GCTGGCTCTGTCT	.	83.0	5.0	61.0	2.0	.	+1	2	Atlas-SNP
PRH1-PRR4	0	hgsc.bcm.edu	37	12	11243716	11243716	+	RNA	SNP	T	T	C	rs199540487	bycluster	TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	.	.	.	.	CACACATATATAT	.	16.0	7.0	7.0	0.0	.	.	.	Atlas-SNP
FOXQ1	94234	hgsc.bcm.edu	37	6	1313401	1313401	+	Silent	SNP	C	C	G	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_033260	exon1	c.C462G	p.P154P	GTTCCCCTTTTTC	.	106.0	16.0	75.0	0.0	.	.	.	Atlas-SNP
KAT8	84148	hgsc.bcm.edu	37	16	31129017	31129017	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_182958	exon1	c.A15G	p.G5G	ACAGGGAGCTGCT	.	54.0	12.0	58.0	0.0	.	.	.	Atlas-SNP
POU4F2	5458	hgsc.bcm.edu	37	4	147560484	147560484	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_004575	exon1	c.C192A	p.G64G	CGGCGGCGGCGGC	.	65.0	6.0	67.0	0.0	.	.	.	Atlas-SNP
TMEM48	55706	hgsc.bcm.edu	37	1	54269668	54269668	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_018087	exon10	c.G999C	p.Q333H	CAGGTCCTGCAAG	.	283.0	55.0	270.0	0.0	.	.	.	Atlas-SNP
FMN2	56776	hgsc.bcm.edu	37	1	240371511	240371511	+	Silent	SNP	C	C	G	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	FMN2,NS,carcinoma,+2,1	FMN2	NM_020066	exon5	c.C3399G	p.P1133P	TCCTCCCCCTCTT	.	98.0	6.0	63.0	0.0	.	+2	1	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179599514	179599514	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_001267550	exon51	c.T15137C	p.V5046A	TCTTCAACTTTTA	.	240.0	33.0	289.0	0.0	.	.	.	Atlas-SNP
UTP18	51096	hgsc.bcm.edu	37	17	49338191	49338191	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_016001	exon1	c.G246A	p.E82E	GGAGGAGGACAAA	.	174.0	31.0	123.0	0.0	.	.	.	Atlas-SNP
HMMR	3161	hgsc.bcm.edu	37	5	162909769	162909769	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_001142556	exon13	c.G1507A	p.E503K	GCAACTGAGAGCT	.	306.0	63.0	344.0	0.0	.	.	.	Atlas-SNP
LAMA5	3911	hgsc.bcm.edu	37	20	60899145	60899145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_005560	exon43	c.C5759T	p.P1920L	TTGGAAGGCACTG	.	82.0	10.0	79.0	0.0	.	.	.	Atlas-SNP
PNPLA7	375775	hgsc.bcm.edu	37	9	140379046	140379046	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_001098537	exon21	c.C2340T	p.S780S	GATGGCGCTGAGG	.	85.0	10.0	93.0	0.0	.	.	.	Atlas-SNP
PIK3CA	5290	hgsc.bcm.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	bycluster	TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	PIK3CA_ENST00000263967,NS,carcinoma,0,1370	PIK3CA_ENST00000263967	NM_006218	exon10	c.G1633A	p.E545K	ATCACTGAGCAGG	.	461.0	50.0	425.0	0.0	.	0	1370	Atlas-SNP
CACNA1C	775	hgsc.bcm.edu	37	12	2743461	2743461	+	Splice_Site	SNP	A	A	C	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_001129839	exon30	c.3829-2A>C	.	CCATGCAGCACTA	.	284.0	41.0	91.0	0.0	.	.	.	Atlas-SNP
