Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
COMMD9	29099	hgsc.bcm.edu	37	11	36310946	36310946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_014186	exon1	c.C17A	p.A6E	TGCTCCGCTGTCA	.	53.0	4.0	64.0	0.0	.	.	.	Atlas-SNP
OR1S1	219959	hgsc.bcm.edu	37	11	57982889	57982889	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	OR1S1,NS,carcinoma,-1,1	OR1S1	NM_001004458	exon1	c.A673G	p.T225A	CCCTTTACACTCA	.	68.0	4.0	88.0	0.0	.	-1	1	Atlas-SNP
RAP1B	5908	hgsc.bcm.edu	37	12	69050092	69050092	+	Missense_Mutation	SNP	A	A	G	rs372360254		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_001010942	exon6	c.A331G	p.M111V	GTTCCAATGATTC	.	200.0	16.0	222.0	0.0	.	.	.	Atlas-SNP
TKT	7086	hgsc.bcm.edu	37	3	53264545	53264545	+	Silent	SNP	G	G	C	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_001258028	exon9	c.C1059G	p.S353S	GAAGGTGGAATTT	.	153.0	10.0	157.0	0.0	.	.	.	Atlas-SNP
RAI14	26064	hgsc.bcm.edu	37	5	34823512	34823512	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_001145525	exon17	c.T1574C	p.F525S	CACATTTCCACGA	.	126.0	12.0	106.0	0.0	.	.	.	Atlas-SNP
TCHH	7062	hgsc.bcm.edu	37	1	152082981	152082981	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_007113	exon3	c.G2712A	p.Q904Q	CAGCAGCTGCTGT	.	131.0	16.0	140.0	0.0	.	.	.	Atlas-SNP
LRRC37BP1	147172	hgsc.bcm.edu	37	17	28960994	28960994	+	RNA	SNP	T	T	C	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	.	.	.	.	TTTCTTTTTTTTT	.	83.0	4.0	63.0	0.0	.	.	.	Atlas-SNP
MCM10	55388	hgsc.bcm.edu	37	10	13230971	13230971	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_182751	exon10	c.G1309T	p.G437X	TCTGGAGGACGAA	.	100.0	4.0	84.0	0.0	.	.	.	Atlas-SNP
KIF5B	3799	hgsc.bcm.edu	37	10	32323677	32323677	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_004521	exon11	c.A1052G	p.N351S	ATCTTATTTTTTT	.	158.0	11.0	157.0	0.0	.	.	.	Atlas-SNP
SSC5D	284297	hgsc.bcm.edu	37	19	56029621	56029621	+	Silent	SNP	A	A	C	rs202012508	bycluster	TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_001144950	exon14	c.A3978C	p.T1326T	CCCCACAACTCCT	.	107.0	9.0	78.0	0.0	.	.	.	Atlas-SNP
VDAC2	7417	hgsc.bcm.edu	37	10	76970938	76970938	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_003375	exon2	c.T22A	p.C8S	CAGACTTGCGCGC	.	119.0	16.0	126.0	0.0	.	.	.	Atlas-SNP
AR	367	hgsc.bcm.edu	37	X	66765173	66765173	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_000044	exon1	c.A185T	p.Q62L	AGCAGCAGCAGCA	.	102.0	18.0	68.0	0.0	.	.	.	Atlas-SNP
IFT46	56912	hgsc.bcm.edu	37	11	118416169	118416169	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_020153	exon12	c.C927T	p.S309S	ATGGAGGGACTGG	.	94.0	10.0	109.0	0.0	.	.	.	Atlas-SNP
SLC9C1	285335	hgsc.bcm.edu	37	3	111997684	111997684	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	SLC9A10,NS,carcinoma,-2,1	SLC9A10	NM_183061	exon4	c.C210A	p.A70A	TTGTATGGCGTTT	.	61.0	3.0	81.0	0.0	.	-2	1	Atlas-SNP
AR	367	hgsc.bcm.edu	37	X	66765170	66765170	+	Missense_Mutation	SNP	A	A	T	rs62636528	byfrequency	TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_000044	exon1	c.A182T	p.Q61L	AGCAGCAGCAGCA	.	98.0	11.0	73.0	0.0	0.043	.	.	Atlas-SNP
DNAH3	55567	hgsc.bcm.edu	37	16	21073932	21073932	+	Silent	SNP	C	C	T	rs374099468		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_017539	exon25	c.G3591A	p.P1197P	CAAGTGCGGCTGC	.	118.0	5.0	121.0	0.0	.	.	.	Atlas-SNP
KIT	3815	hgsc.bcm.edu	37	4	55599320	55599320	+	Missense_Mutation	SNP	G	G	T	rs121913506	bycluster	TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	KIT,colon,carcinoma,0,932	KIT	NM_000222	exon17	c.G2446T	p.D816Y	GCCAGAGACATCA	.	83.0	10.0	87.0	0.0	.	0	932	Atlas-SNP
CDC27	996	hgsc.bcm.edu	37	17	45234300	45234300	+	Missense_Mutation	SNP	G	G	T	rs199588670		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	CDC27_ENST00000531206,NS,carcinoma,0,10	CDC27_ENST00000531206	NM_001114091	exon7	c.C821A	p.A274D	CTAAGAGCTGCTG	.	45.0	7.0	34.0	1.0	.	0	10	Atlas-SNP
