Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
ATIC	471	hgsc.bcm.edu	37	2	216209567	216209568	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	ATIC	NM_004044	exon13	c.1292_1293del	p.431_431del	.	.	113.0	19.0	116.0	0.0	.	84	.	Atlas-Indel
SZT2	23334	hgsc.bcm.edu	37	1	43868935	43868935	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	SZT2	NM_015284	exon2	c.114delT	p.H38fs	.	.	106.0	18.0	117.0	0.0	.	383	.	Atlas-Indel
ADARB2-AS1	642394	hgsc.bcm.edu	37	10	1578005	1578005	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	.	.	.	.	TGAGTTCCCTTGC	.	123.0	6.0	106.0	0.0	.	.	.	Atlas-SNP
ITGA6	3655	hgsc.bcm.edu	37	2	173349559	173349559	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_001079818	exon12	c.A1599G	p.L533L	TGGGCTATCCTCA	.	117.0	21.0	102.0	0.0	.	.	.	Atlas-SNP
AFMID	125061	hgsc.bcm.edu	37	17	76198677	76198677	+	Silent	SNP	G	G	T	rs189378031	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	AFMID,NS,carcinoma,+1,1	AFMID	NM_001145526	exon3	c.G252T	p.S84S	CGAGTCGTCTGAA	.	67.0	8.0	83.0	0.0	.	+1	1	Atlas-SNP
RAET1L	154064	hgsc.bcm.edu	37	6	150346542	150346542	+	Missense_Mutation	SNP	C	C	G	rs200401216	bycluster;by1000genomes	TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_130900	exon1	c.G66C	p.W22C	CCGGGACCAGCCG	.	75.0	6.0	48.0	0.0	0.001	.	.	Atlas-SNP
KRAS	3845	hgsc.bcm.edu	37	12	25380276	25380276	+	Missense_Mutation	SNP	T	T	A	rs121913240	bycluster	TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	KRAS_ENST00000256078,colon,carcinoma,+1,429	KRAS_ENST00000256078	NM_004985	exon3	c.A182T	p.Q61L	TCCTCTTGACCTG	.	132.0	19.0	124.0	0.0	.	+1	429	Atlas-SNP
ACIN1	22985	hgsc.bcm.edu	37	14	23549896	23549896	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_001164814	exon6	c.G822A	p.E274E	CTCCTCCTCTTCT	.	93.0	4.0	95.0	0.0	.	.	.	Atlas-SNP
KRTAP10-6	386674	hgsc.bcm.edu	37	21	46011664	46011664	+	Silent	SNP	G	G	A	rs112627096		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_198688	exon1	c.C702T	p.C234C	AGGCACGCAGCAG	.	63.0	4.0	68.0	0.0	0.500	.	.	Atlas-SNP
CTNND1	1500	hgsc.bcm.edu	37	11	57576927	57576927	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_001085458	exon15	c.C2424G	p.I808M	GTTGATCAACAAA	.	55.0	14.0	85.0	0.0	.	.	.	Atlas-SNP
SRCAP	10847	hgsc.bcm.edu	37	16	30749732	30749732	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	SRCAP,NS,carcinoma,-1,1	SRCAP	NM_006662	exon34	c.C8371A	p.P2791T	GGAAGCCCGTCTG	.	65.0	11.0	56.0	0.0	.	-1	1	Atlas-SNP
