Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
COPA	1314	hgsc.bcm.edu	37	1	160264296	160264298	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	COPA	NM_001098398	exon25	c.2680_2682del	p.894_894del	.	.	232.0	38.0	192.0	0.0	.	181	.	Pindel,Atlas-Indel
RAD21	5885	hgsc.bcm.edu	37	8	117861253	117861254	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	RAD21	NM_006265	exon13	c.1636_1637del	p.546_546del	.	.	156.0	33.0	190.0	0.0	.	95	.	Atlas-Indel
EPHB4	2050	hgsc.bcm.edu	37	7	100421432	100421432	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	EPHB4,NS,carcinoma,0,1	EPHB4	NM_004444	exon3	c.246delC	p.G82fs	.	.	71.0	11.0	47.0	0.0	.	106	.	Atlas-Indel
SNRPB	6628	hgsc.bcm.edu	37	20	2442419	2442419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	SNRPB,NS,carcinoma,+1,1	SNRPB	NM_198216	exon7	c.C706T	p.R236C	GTGGGCGCATTCC	.	92.0	4.0	84.0	0.0	.	+1	1	Atlas-SNP
CASD1	64921	hgsc.bcm.edu	37	7	94167043	94167043	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_022900	exon9	c.T1103G	p.L368X	TACTTTTACAATC	.	172.0	39.0	99.0	0.0	.	.	.	Atlas-SNP
MROH2B	133558	hgsc.bcm.edu	37	5	41009457	41009457	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	HEATR7B2,NS,carcinoma,-1,3	HEATR7B2	NM_173489	exon32	c.G3345A	p.G1115G	GAGTTTCCCACTG	.	69.0	8.0	85.0	1.0	.	-1	3	Atlas-SNP
ZNF738	148203	hgsc.bcm.edu	37	19	21558947	21558947	+	RNA	SNP	G	G	T	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	.	.	.	.	CATAGGGCCATCT	.	36.0	8.0	17.0	0.0	.	.	.	Atlas-SNP
C7orf26	79034	hgsc.bcm.edu	37	7	6634134	6634134	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_024067	exon3	c.G483T	p.P161P	GGTGCCGGGATCC	.	125.0	20.0	89.0	0.0	.	.	.	Atlas-SNP
C6orf70	55780	hgsc.bcm.edu	37	6	170159980	170159980	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_018341	exon7	c.C652A	p.L218M	CAGTTACTGAAGA	.	80.0	17.0	67.0	0.0	.	.	.	Atlas-SNP
TXNDC2	84203	hgsc.bcm.edu	37	18	9886894	9886894	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	TXNDC2_ENST00000306084,bladder,carcinoma,0,4	TXNDC2_ENST00000306084	NM_001098529	exon2	c.A418G	p.K140E	TCAGAAAAAGCCA	.	58.0	3.0	90.0	1.0	.	0	4	Atlas-SNP
CCDC144C	348254	hgsc.bcm.edu	37	17	20279706	20279706	+	RNA	SNP	C	C	T	rs146426615	by1000genomes	TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	.	.	.	.	TCTTCCCGCAAAC	.	89.0	22.0	89.0	0.0	0.005	.	.	Atlas-SNP
PLXNB2	23654	hgsc.bcm.edu	37	22	50728449	50728449	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_012401	exon3	c.G565T	p.D189Y	TCCGGTCCAACAG	.	189.0	32.0	130.0	0.0	.	.	.	Atlas-SNP
CADM2	253559	hgsc.bcm.edu	37	3	86010725	86010725	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	CADM2_ENST00000383699,NS,lymphoid_neoplasm,-2,2	CADM2_ENST00000383699	NM_001167675	exon8	c.A898G	p.N300D	ACGGATAATGGTA	.	119.0	18.0	109.0	0.0	.	-2	2	Atlas-SNP
ZBTB9	221504	hgsc.bcm.edu	37	6	33424120	33424120	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_152735	exon2	c.A1243G	p.I415V	TGTGGCATCTGCA	.	102.0	23.0	72.0	0.0	.	.	.	Atlas-SNP
GABPB1	2553	hgsc.bcm.edu	37	15	50581739	50581739	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_005254	exon7	c.C860G	p.S287C	GGAATAGAGTGCA	.	122.0	27.0	71.0	0.0	.	.	.	Atlas-SNP
KRAS	3845	hgsc.bcm.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	A	rs121913529	bycluster	TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	KRAS_ENST00000256078,NS,adenocarcinoma,0,25136	KRAS_ENST00000256078	NM_004985	exon2	c.G35T	p.G12V	ACGCCACCAGCTC	.	244.0	43.0	175.0	0.0	.	0	25136	Atlas-SNP
PCDH15	65217	hgsc.bcm.edu	37	10	55583018	55583018	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_001142763	exon35	c.A4489G	p.I1497V	CCTCAATAGTATT	.	94.0	24.0	88.0	0.0	.	.	.	Atlas-SNP
PHYH	5264	hgsc.bcm.edu	37	10	13330436	13330436	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	PHYH,NS,carcinoma,-1,2	PHYH	NM_006214	exon6	c.G602A	p.R201Q	TTGTTCCGGCTGA	.	72.0	3.0	73.0	1.0	.	-1	2	Atlas-SNP
ANKLE1	126549	hgsc.bcm.edu	37	19	17396520	17396520	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	FLJ39369,NS,carcinoma,-2,1	FLJ39369	NM_152363	exon8	c.A1567C	p.I523L	CGTCAGATCTTGG	.	90.0	26.0	72.0	0.0	.	-2	1	Atlas-SNP
PKHD1L1	93035	hgsc.bcm.edu	37	8	110498968	110498968	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_177531	exon59	c.A9798T	p.E3266D	TGGTGAAGATTAC	.	287.0	47.0	195.0	0.0	.	.	.	Atlas-SNP
SFTPB	6439	hgsc.bcm.edu	37	2	85890852	85890852	+	Missense_Mutation	SNP	C	C	T	rs371267944		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_198843	exon8	c.G827A	p.R276H	AGCATGCGGCCCA	.	96.0	5.0	61.0	0.0	.	.	.	Atlas-SNP
ATG2B	55102	hgsc.bcm.edu	37	14	96772134	96772134	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_018036	exon31	c.G4525T	p.V1509F	TTATAACTGGTTC	.	99.0	29.0	81.0	0.0	.	.	.	Atlas-SNP
SSC5D	284297	hgsc.bcm.edu	37	19	56029616	56029616	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_001144950	exon14	c.C3973A	p.P1325T	CCTCACCCCACAA	.	120.0	6.0	104.0	0.0	.	.	.	Atlas-SNP
GPC5	2262	hgsc.bcm.edu	37	13	92345961	92345961	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_004466	exon3	c.G846A	p.L282L	CTGCCTGGCGCAC	.	47.0	22.0	57.0	0.0	.	.	.	Atlas-SNP
INSR	3643	hgsc.bcm.edu	37	19	7143086	7143086	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_000208	exon12	c.C2283A	p.R761R	GGACCTGCGTTTC	.	112.0	5.0	99.0	0.0	.	.	.	Atlas-SNP
DHFRL1	200895	hgsc.bcm.edu	37	3	93780000	93780000	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_001195643	exon2	c.G356C	p.S119T	ACAGAACTGCCAC	.	177.0	27.0	184.0	0.0	.	.	.	Atlas-SNP
