Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
RBM10	8241	hgsc.bcm.edu	37	X	47030570	47030672	+	Frame_Shift_Del	DEL	GGAGGAGGAGGAGGATGAGGAGGAGGAGGAGAAGGCCAGTAACATCGTCATGCTGAGGATGCTGCCACAGGCAGCCACTGAGGATGACGTACGTGCCCCCCAT	GGAGGAGGAGGAGGATGAGGAGGAGGAGGAGAAGGCCAGTAACATCGTCATGCTGAGGATGCTGCCACAGGCAGCCACTGAGGATGACGTACGTGCCCCCCAT	-	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	GGAGGAGGAGGAGGATGAGGAGGAGGAGGAGAAGGCCAGTAACATCGTCATGCTGAGGATGCTGCCACAGGCAGCCACTGAGGATGACGTACGTGCCCCCCAT	GGAGGAGGAGGAGGATGAGGAGGAGGAGGAGAAGGCCAGTAACATCGTCATGCTGAGGATGCTGCCACAGGCAGCCACTGAGGATGACGTACGTGCCCCCCAT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	RBM10	NM_001204468	exon4	c.539_627del	p.180_209del	.	.	23.0	10.0	41.0	0.0	.	117	.	Pindel
PRR19	284338	hgsc.bcm.edu	37	19	42814216	42814216	+	Silent	SNP	C	C	G	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_199285	exon2	c.C480G	p.A160A	ACAGGCCTTCCCC	.	38.0	5.0	77.0	0.0	.	.	.	Atlas-SNP
CLCNKA	1187	hgsc.bcm.edu	37	1	16358965	16358965	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_004070	exon18	c.G1873T	p.G625C	GCCAGGGGCTGCC	.	122.0	20.0	202.0	0.0	.	.	.	Atlas-SNP
FRG1B	284802	hgsc.bcm.edu	37	20	29628491	29628491	+	RNA	SNP	A	A	G	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	.	.	.	.	AATCCCATAGTTG	.	56.0	5.0	67.0	0.0	.	.	.	Atlas-SNP
RTKN2	219790	hgsc.bcm.edu	37	10	63976918	63976918	+	Missense_Mutation	SNP	C	C	T	rs115357868	bycluster;byfrequency;by1000genomes	TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_145307	exon9	c.G979A	p.E327K	TAGCTTCAATTTC	.	92.0	7.0	104.0	0.0	0.001	.	.	Atlas-SNP
EEF1E1-MUTED	0	hgsc.bcm.edu	37	6	8090389	8090389	+	RNA	SNP	A	A	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	.	.	.	.	TACAGAAAAAAAG	.	110.0	21.0	125.0	0.0	.	.	.	Atlas-SNP
GTF2E1	2960	hgsc.bcm.edu	37	3	120469513	120469513	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_005513	exon2	c.C114G	p.I38M	CTTGATCAGGAAC	.	113.0	13.0	140.0	0.0	.	.	.	Atlas-SNP
PTDSS2	81490	hgsc.bcm.edu	37	11	490432	490432	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_030783	exon12	c.G1314A	p.L438L	CACATTGAGGTAC	.	110.0	21.0	207.0	0.0	.	.	.	Atlas-SNP
NFASC	23114	hgsc.bcm.edu	37	1	204939861	204939861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_015090	exon11	c.G1154T	p.G385V	TGAATGGGGAACC	.	96.0	4.0	116.0	0.0	.	.	.	Atlas-SNP
RFX7	64864	hgsc.bcm.edu	37	15	56385646	56385646	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_022841	exon9	c.C4280A	p.P1427Q	AATAATGGGTCAT	.	97.0	4.0	117.0	0.0	.	.	.	Atlas-SNP
GNL3L	54552	hgsc.bcm.edu	37	X	54578731	54578731	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001184819	exon13	c.G1188T	p.K396N	CGGGAAGATCAGC	.	103.0	6.0	119.0	0.0	.	.	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	37	1	228468319	228468319	+	Silent	SNP	C	C	T	rs186845111	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001271223	exon35	c.C9306T	p.P3102P	TGACCCCGAGGCC	.	45.0	4.0	61.0	0.0	.	.	.	Atlas-SNP
RNF31	55072	hgsc.bcm.edu	37	14	24620535	24620535	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_017999	exon9	c.C1684T	p.H562Y	GATCGTCATGGCA	.	45.0	7.0	83.0	0.0	.	.	.	Atlas-SNP
CAMSAP1	157922	hgsc.bcm.edu	37	9	138719406	138719406	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_015447	exon8	c.G1070T	p.S357I	CGGCTGCTCTTCT	.	34.0	11.0	37.0	0.0	.	.	.	Atlas-SNP
CASP8	841	hgsc.bcm.edu	37	2	202137405	202137405	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001080125	exon4	c.G633A	p.L211L	CATCCTGGGAGAA	.	79.0	13.0	89.0	0.0	.	.	.	Atlas-SNP
CSRNP3	80034	hgsc.bcm.edu	37	2	166532964	166532964	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001172173	exon6	c.C551A	p.A184D	GAAGAGCTCTGCT	.	113.0	21.0	114.0	0.0	.	.	.	Atlas-SNP
TAF1B	9014	hgsc.bcm.edu	37	2	10059215	10059215	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_005680	exon13	c.C1317T	p.D439D	TGTCGACAAACCA	.	85.0	9.0	74.0	0.0	.	.	.	Atlas-SNP
ADAM2	2515	hgsc.bcm.edu	37	8	39695678	39695678	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	ADAM2,NS,carcinoma,0,2	ADAM2	NM_001464	exon1	c.C27T	p.S9S	GAGCCCGCTGAGC	.	121.0	26.0	181.0	0.0	.	0	2	Atlas-SNP
SP6	80320	hgsc.bcm.edu	37	17	45925774	45925774	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001258248	exon2	c.T22G	p.S8A	CCAGAGAGCCGCA	.	45.0	15.0	64.0	0.0	.	.	.	Atlas-SNP
EBPL	84650	hgsc.bcm.edu	37	13	50235160	50235160	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	EBPL,NS,carcinoma,0,9	EBPL	NM_032565	exon4	c.C565G	p.L189V	GTTCTAGCCATGA	.	74.0	4.0	131.0	2.0	.	0	9	Atlas-SNP
ND4	0	hgsc.bcm.edu	37	MT	11073	11073	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	ENST00000361381	exon1	c.C314T	p.S105F	AAATCTCCTTAAT	.	6.0	6.0	8.0	0.0	.	.	.	Atlas-SNP
