Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
CASQ2	845	hgsc.bcm.edu	37	1	116243913	116243915	+	In_Frame_Del	DEL	ATC	ATC	-	rs72554070	byfrequency	TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	ATC	ATC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	CASQ2	NM_001232	exon11	c.1148_1150del	p.383_384del	.	.	85.0	10.0	110.0	0.0	.	54	.	Atlas-Indel
ABCA13	154664	hgsc.bcm.edu	37	7	48313134	48313134	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	ABCA13	NM_152701	exon17	c.3870delG	p.E1290fs	.	.	171.0	22.0	140.0	0.0	.	1192	.	Atlas-Indel
KIAA0040	9674	hgsc.bcm.edu	37	1	175129933	175129934	+	Frame_Shift_Ins	INS	-	-	CATC	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	KIAA0040,colon,carcinoma,0,1	KIAA0040	NM_001162893	exon5	c.217_218insGATG	p.K73fs	.	.	105.0	15.0	67.0	0.0	.	2	.	Atlas-Indel
KLHL13	90293	hgsc.bcm.edu	37	X	117053497	117053497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_001168299	exon5	c.T566C	p.F189S	ATGAGAAACACTT	.	238.0	51.0	215.0	0.0	.	.	.	Atlas-SNP
SPAG11A	653423	hgsc.bcm.edu	37	8	7721053	7721053	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_001081552	exon4	c.G323T	p.G108V	GCTGTGGATAAGG	.	499.0	46.0	433.0	0.0	.	.	.	Atlas-SNP
OR2A12	346525	hgsc.bcm.edu	37	7	143792684	143792684	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_001004135	exon1	c.A484T	p.I162F	ACTCTTATTCTGA	.	94.0	12.0	75.0	0.0	.	.	.	Atlas-SNP
DICER1	23405	hgsc.bcm.edu	37	14	95562966	95562966	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_030621	exon24	c.G4291T	p.A1431S	TCGGAGCCCTCCA	.	268.0	43.0	222.0	0.0	.	.	.	Atlas-SNP
KIT	3815	hgsc.bcm.edu	37	4	55599320	55599320	+	Missense_Mutation	SNP	G	G	T	rs121913506	bycluster	TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	KIT,colon,carcinoma,0,932	KIT	NM_000222	exon17	c.G2446T	p.D816Y	GCCAGAGACATCA	.	93.0	36.0	77.0	1.0	.	0	932	Atlas-SNP
DPYSL5	56896	hgsc.bcm.edu	37	2	27165450	27165450	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_001253724	exon11	c.C1272G	p.F424L	AGACTTCAACCTG	.	210.0	27.0	200.0	0.0	.	.	.	Atlas-SNP
BPIFB6	128859	hgsc.bcm.edu	37	20	31625524	31625524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_174897	exon8	c.G826A	p.V276M	TTTCATGTGAATA	.	93.0	20.0	98.0	0.0	.	.	.	Atlas-SNP
OR4C6	219432	hgsc.bcm.edu	37	11	55433353	55433353	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_001004704	exon1	c.C711A	p.T237T	CTCTACCTGCAGC	.	63.0	13.0	107.0	0.0	.	.	.	Atlas-SNP
BRPF1	7862	hgsc.bcm.edu	37	3	9776087	9776087	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_001003694	exon2	c.A263G	p.E88G	GCCGTGAGGTGAT	.	61.0	15.0	64.0	0.0	.	.	.	Atlas-SNP
C8orf46	254778	hgsc.bcm.edu	37	8	67428168	67428168	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_152765	exon6	c.C481T	p.L161F	CCAGCCCTTCCCC	.	64.0	13.0	35.0	0.0	.	.	.	Atlas-SNP
CCNB3	85417	hgsc.bcm.edu	37	X	50054033	50054033	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_033031	exon5	c.C2864T	p.P955L	AGAGTCCCACCTA	.	132.0	25.0	90.0	0.0	.	.	.	Atlas-SNP
STAB1	23166	hgsc.bcm.edu	37	3	52536182	52536182	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_015136	exon5	c.T425C	p.F142S	AAAACTTCCGCGG	.	71.0	14.0	42.0	0.0	.	.	.	Atlas-SNP
PXDNL	137902	hgsc.bcm.edu	37	8	52321563	52321563	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_144651	exon17	c.C2621T	p.P874L	GCAGAGGGACGGC	.	46.0	5.0	42.0	0.0	.	.	.	Atlas-SNP
SLC26A8	116369	hgsc.bcm.edu	37	6	35965635	35965635	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_052961	exon5	c.C507T	p.N169N	TTGACCGTTGTTG	.	150.0	15.0	115.0	0.0	.	.	.	Atlas-SNP
ANKRD20A5P	440482	hgsc.bcm.edu	37	18	14179286	14179286	+	RNA	SNP	A	A	G	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	.	.	.	.	GGTTGGATAGGGG	.	23.0	5.0	20.0	0.0	.	.	.	Atlas-SNP
HECTD4	283450	hgsc.bcm.edu	37	12	112690363	112690363	+	Splice_Site	SNP	C	C	A	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_001109662	exon24	c.3016-1G>T	.	AATGCACTTTAAA	.	39.0	5.0	30.0	0.0	.	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179453414	179453414	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_001267550	exon304	c.T63038G	p.V21013G	TTGTTGACAGGGA	.	154.0	19.0	109.0	0.0	.	.	.	Atlas-SNP
CD180	4064	hgsc.bcm.edu	37	5	66481688	66481688	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_005582	exon2	c.A248G	p.D83G	GTTAAATCCAAAA	.	79.0	10.0	73.0	0.0	.	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179440555	179440555	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_001267550	exon326	c.C70304A	p.T23435K	CCTGGCGTGTCCA	.	121.0	22.0	120.0	0.0	.	.	.	Atlas-SNP
ACE	1636	hgsc.bcm.edu	37	17	61557850	61557850	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_000789	exon5	c.T808C	p.Y270H	GACAGATACATCA	.	48.0	17.0	50.0	0.0	.	.	.	Atlas-SNP
OR4C6	219432	hgsc.bcm.edu	37	11	55433352	55433352	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_001004704	exon1	c.C710A	p.T237N	TCTCTACCTGCAG	.	64.0	13.0	103.0	0.0	.	.	.	Atlas-SNP
WRN	7486	hgsc.bcm.edu	37	8	30938722	30938722	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_000553	exon9	c.G1179A	p.M393I	TTTGATGTCGTTA	.	223.0	28.0	146.0	0.0	.	.	.	Atlas-SNP
SAE1	10055	hgsc.bcm.edu	37	19	47700585	47700585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_005500	exon7	c.C829T	p.L277F	GATGTGCTTGACT	.	187.0	28.0	132.0	0.0	.	.	.	Atlas-SNP
PTCH1	5727	hgsc.bcm.edu	37	9	98278972	98278972	+	Missense_Mutation	SNP	T	T	C	rs202111971	bycluster;by1000genomes	TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	PTCH1_ENST00000430669,NS,carcinoma,0,2	PTCH1_ENST00000430669	NM_001083603	exon1	c.A131G	p.E44G	TCTTCTTCTCCTC	.	46.0	3.0	74.0	1.0	0.004	0	2	Atlas-SNP
GNL3L	54552	hgsc.bcm.edu	37	X	54569721	54569721	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_001184819	exon7	c.G472T	p.A158S	GAGGAGGCTGTCC	.	105.0	23.0	70.0	0.0	.	.	.	Atlas-SNP
CD300E	342510	hgsc.bcm.edu	37	17	72610140	72610140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_181449	exon3	c.G421A	p.A141T	GTGTGGCTGGATG	.	76.0	14.0	118.0	0.0	.	.	.	Atlas-SNP
OR2A12	346525	hgsc.bcm.edu	37	7	143792692	143792692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_001004135	exon1	c.G492T	p.R164S	TCTGAGGCTGCCT	.	92.0	12.0	72.0	0.0	.	.	.	Atlas-SNP
C12orf45	121053	hgsc.bcm.edu	37	12	105380211	105380211	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_152318	exon1	c.G81A	p.K27K	GTCCAAGGAGCTG	.	131.0	16.0	88.0	0.0	.	.	.	Atlas-SNP
PHLPP1	23239	hgsc.bcm.edu	37	18	60562289	60562289	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	PHLPP,rectum,carcinoma,+2,1	PHLPP	NM_194449	exon5	c.G2112A	p.G704G	TTTAGGGGACTTC	.	86.0	22.0	105.0	0.0	.	+2	1	Atlas-SNP
OPN3	23596	hgsc.bcm.edu	37	1	241757947	241757947	+	Missense_Mutation	SNP	C	C	T	rs180909883	bycluster;by1000genomes	TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_014322	exon4	c.G992A	p.C331Y	CTCTGGCACCTCA	.	128.0	20.0	99.0	0.0	0.002	.	.	Atlas-SNP
DNAH17	8632	hgsc.bcm.edu	37	17	76482089	76482089	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_173628	exon46	c.A7228T	p.T2410S	TATCTGTCCAGGG	.	42.0	9.0	37.0	0.0	.	.	.	Atlas-SNP
GOLGA3	2802	hgsc.bcm.edu	37	12	133381341	133381341	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_001172557	exon7	c.G1558C	p.E520Q	TGTCCTCTACCTT	.	71.0	11.0	60.0	0.0	.	.	.	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	37	7	48313138	48313138	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_152701	exon17	c.G3875A	p.S1292N	AGTTTAGCAGTAC	.	173.0	24.0	143.0	0.0	.	.	.	Atlas-SNP
POLR1A	25885	hgsc.bcm.edu	37	2	86310262	86310262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	POLR1A,NS,carcinoma,+1,2	POLR1A	NM_015425	exon7	c.G760A	p.G254R	AGTATCCTCGTTT	.	125.0	30.0	91.0	0.0	.	+1	2	Atlas-SNP
LMOD3	56203	hgsc.bcm.edu	37	3	69168059	69168059	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_198271	exon2	c.G1447A	p.D483N	AGGAGTCAGGGTC	.	208.0	23.0	138.0	0.0	.	.	.	Atlas-SNP
HARS	3035	hgsc.bcm.edu	37	5	140062772	140062772	+	Silent	SNP	T	T	A	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_001258041	exon3	c.A213T	p.A71A	GCGAACTGCCATC	.	174.0	32.0	154.0	0.0	.	.	.	Atlas-SNP
TUBB	203068	hgsc.bcm.edu	37	6	30691552	30691552	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_178014	exon4	c.C713A	p.T238N	TCACCACCTGCCT	.	138.0	18.0	118.0	0.0	.	.	.	Atlas-SNP
ZNF483	158399	hgsc.bcm.edu	37	9	114305381	114305381	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_133464	exon6	c.C2166G	p.N722K	ATGTAACGAATGT	.	133.0	24.0	137.0	0.0	.	.	.	Atlas-SNP
RNR2	6053	hgsc.bcm.edu	37	MT	2751	2751	+	RNA	SNP	G	G	A	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	.	.	.	.	ATTAATGCAAACA	.	22.0	12.0	23.0	0.0	.	.	.	Atlas-SNP
UPK3A	7380	hgsc.bcm.edu	37	22	45689175	45689175	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	UPK3A,NS,malignant_melanoma,0,1	UPK3A	NM_006953	exon5	c.G685T	p.A229S	GCTGGCGCCATTG	.	41.0	2.0	35.0	0.0	.	0	1	Atlas-SNP
ST8SIA2	8128	hgsc.bcm.edu	37	15	92981699	92981699	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_006011	exon4	c.C407T	p.S136F	ATGTGTCCCAGAA	.	153.0	16.0	122.0	0.0	.	.	.	Atlas-SNP
BRPF1	7862	hgsc.bcm.edu	37	3	9776089	9776089	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_001003694	exon2	c.G265T	p.V89L	CGTGAGGTGATGA	.	62.0	15.0	64.0	0.0	.	.	.	Atlas-SNP
TCERG1	10915	hgsc.bcm.edu	37	5	145838692	145838692	+	Silent	SNP	G	G	A	rs371770535	alternate_allele	TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_006706	exon4	c.G684A	p.Q228Q	GGCCCAGGCTCAG	.	149.0	12.0	143.0	0.0	.	.	.	Atlas-SNP
OR4C6	219432	hgsc.bcm.edu	37	11	55433354	55433354	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_001004704	exon1	c.T712C	p.C238R	TCTACCTGCAGCT	.	63.0	13.0	105.0	0.0	.	.	.	Atlas-SNP
ANKRD61	100310846	hgsc.bcm.edu	37	7	6075988	6075988	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_001271700	exon3	c.T1228A	p.C410S	GTCTACTGCTGTT	.	40.0	6.0	20.0	0.0	.	.	.	Atlas-SNP
FILIP1L	11259	hgsc.bcm.edu	37	3	99568485	99568485	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_182909	exon5	c.C2035T	p.H679Y	TAACATGTTCTAG	.	112.0	14.0	95.0	0.0	.	.	.	Atlas-SNP
DMD	1756	hgsc.bcm.edu	37	X	32591877	32591877	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_004006	exon14	c.T1689C	p.R563R	AGTAAGACGTTGC	.	271.0	71.0	161.0	0.0	.	.	.	Atlas-SNP
TTLL4	9654	hgsc.bcm.edu	37	2	219603764	219603764	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_014640	exon3	c.T1365C	p.P455P	TCCCCCTTTTCCT	.	92.0	5.0	59.0	0.0	.	.	.	Atlas-SNP
PPP6R1	22870	hgsc.bcm.edu	37	19	55753642	55753642	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	PPP6R1_ENST00000412770,NS,carcinoma,0,1	PPP6R1_ENST00000412770	NM_014931	exon7	c.A737G	p.E246G	ATCGTCTCCTGCC	.	67.0	11.0	57.0	0.0	.	0	1	Atlas-SNP
NIPBL	25836	hgsc.bcm.edu	37	5	37022252	37022252	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_133433	exon28	c.5427+1G>T	.	GCAAGGGTAAAGA	.	146.0	26.0	168.0	0.0	.	.	.	Atlas-SNP
AMT	275	hgsc.bcm.edu	37	3	49459856	49459856	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_001164711	exon1	c.C28T	p.R10C	CCAGACGGGCCAC	.	145.0	28.0	121.0	0.0	.	.	.	Atlas-SNP
SLC35G5	83650	hgsc.bcm.edu	37	8	11189163	11189163	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_054028	exon1	c.G548A	p.G183E	AGGAGGGGACCAC	.	90.0	19.0	72.0	0.0	.	.	.	Atlas-SNP
PANK1	53354	hgsc.bcm.edu	37	10	91404672	91404672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_148977	exon1	c.C388T	p.R130C	CTGTGCGCGGGCC	.	55.0	5.0	40.0	0.0	.	.	.	Atlas-SNP
XIRP2	129446	hgsc.bcm.edu	37	2	168107331	168107331	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_152381	exon9	c.G9429T	p.Q3143H	TTCTCAGTCCCCT	.	100.0	4.0	101.0	0.0	.	.	.	Atlas-SNP
GABPA	2551	hgsc.bcm.edu	37	21	27136954	27136954	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_001197297	exon9	c.C992G	p.T331S	TTCTTACTGATAA	.	186.0	29.0	123.0	0.0	.	.	.	Atlas-SNP
DIAPH1	1729	hgsc.bcm.edu	37	5	140961940	140961940	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_005219	exon7	c.G623T	p.S208I	TCGTAACTCCTGT	.	96.0	19.0	105.0	0.0	.	.	.	Atlas-SNP
USP5	8078	hgsc.bcm.edu	37	12	6964956	6964956	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_003481	exon3	c.C275T	p.P92L	ACCCACCCCGGAA	.	118.0	13.0	69.0	0.0	.	.	.	Atlas-SNP
C1QTNF1	114897	hgsc.bcm.edu	37	17	77042730	77042730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFE-01A-11D-A42Y-10	TCGA-2G-AAFE-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae5489-617a-446b-bae6-152b6477e384	32168501-21e3-4631-adb5-c78cbeb109c3	.	.	NM_030968	exon3	c.G249T	p.M83I	CTCCATGTACCCG	.	89.0	18.0	101.0	0.0	.	.	.	Atlas-SNP
