Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
KRT8	3856	hgsc.bcm.edu	37	12	53298699	53298699	+	Missense_Mutation	SNP	G	G	A	rs201807576	byfrequency	TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	KRT8,colon,carcinoma,0,2	KRT8	NM_001256282	exon2	c.C151T	p.R51C	AGGAGCGGCTGCT	.	41.0	7.0	30.0	0.0	0.055	0	2	Atlas-SNP
UBE3B	89910	hgsc.bcm.edu	37	12	109972569	109972569	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	UBE3B,colon,carcinoma,0,1	UBE3B	NM_130466	exon28	c.G3189T	p.T1063T	GAACACGGGCTTT	.	65.0	3.0	61.0	0.0	.	0	1	Atlas-SNP
ZNF782	158431	hgsc.bcm.edu	37	9	99581871	99581871	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001001662	exon6	c.G434T	p.C145F	CCCTGGCAAGCAG	.	56.0	5.0	64.0	0.0	.	.	.	Atlas-SNP
LUC7L3	51747	hgsc.bcm.edu	37	17	48821082	48821082	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_006107	exon6	c.T442A	p.S148T	TTAGGGTCTGAAG	.	135.0	24.0	139.0	0.0	.	.	.	Atlas-SNP
LPHN2	23266	hgsc.bcm.edu	37	1	82436031	82436031	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_012302	exon14	c.T2716A	p.F906I	CTACACTTTTTCT	.	85.0	12.0	110.0	0.0	.	.	.	Atlas-SNP
TNF	7124	hgsc.bcm.edu	37	6	31544958	31544958	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_000594	exon4	c.G346T	p.G116C	GCCAATGGCGTGG	.	80.0	4.0	75.0	0.0	.	.	.	Atlas-SNP
ABCD1	215	hgsc.bcm.edu	37	X	152991228	152991228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_000033	exon1	c.C507A	p.H169Q	GGCCCACGCCTAC	.	61.0	10.0	58.0	0.0	.	.	.	Atlas-SNP
ITPR3	3710	hgsc.bcm.edu	37	6	33652420	33652420	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_002224	exon38	c.C5092G	p.R1698G	CAGAACCGGAAGT	.	98.0	20.0	121.0	0.0	.	.	.	Atlas-SNP
UBR5	51366	hgsc.bcm.edu	37	8	103277378	103277378	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_015902	exon53	c.G7551T	p.R2517S	GCCAGGCCTTGGA	.	155.0	16.0	115.0	0.0	.	.	.	Atlas-SNP
RNR2	6053	hgsc.bcm.edu	37	MT	2573	2573	+	RNA	SNP	G	G	A	rs28683810		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	.	.	.	.	GGCCGCGGTACCC	.	48.0	9.0	49.0	0.0	.	.	.	Atlas-SNP
TTF1	7270	hgsc.bcm.edu	37	9	135275424	135275424	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_007344	exon3	c.A1589G	p.Q530R	TCACCTTGTGCTT	.	148.0	31.0	148.0	0.0	.	.	.	Atlas-SNP
TREML2	79865	hgsc.bcm.edu	37	6	41166095	41166095	+	Missense_Mutation	SNP	T	T	C	rs141238140		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_024807	exon2	c.A128G	p.Y43C	CCCTTATAGGAGC	.	48.0	4.0	64.0	0.0	.	.	.	Atlas-SNP
MAGI1	9223	hgsc.bcm.edu	37	3	65425603	65425603	+	Silent	SNP	T	T	C	rs62642828	byfrequency	TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001033057	exon9	c.A1221G	p.Q407Q	CTGCTGTTGCTGC	.	41.0	7.0	29.0	0.0	0.258	.	.	Atlas-SNP
OR10J1	26476	hgsc.bcm.edu	37	1	159410279	159410279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	OR10J1,NS,carcinoma,+1,1	OR10J1	NM_012351	exon1	c.G731A	p.R244Q	AGGGCCGGAAGAA	.	105.0	6.0	108.0	1.0	.	+1	1	Atlas-SNP
HLX	3142	hgsc.bcm.edu	37	1	221054636	221054636	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_021958	exon2	c.C693G	p.N231K	CATTAACGAGGCT	.	118.0	18.0	147.0	0.0	.	.	.	Atlas-SNP
TET1	80312	hgsc.bcm.edu	37	10	70412305	70412305	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_030625	exon6	c.C4415G	p.T1472S	TGTACACCGGTAA	.	66.0	12.0	72.0	0.0	.	.	.	Atlas-SNP
FRG1	2483	hgsc.bcm.edu	37	4	190876283	190876283	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_004477	exon5	c.C409A	p.Q137K	AGAGAACAATGGG	.	132.0	7.0	164.0	0.0	.	.	.	Atlas-SNP
MAGI1	9223	hgsc.bcm.edu	37	3	65425594	65425594	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	MAGI1_ENST00000402939,NS,carcinoma,0,9	MAGI1_ENST00000402939	NM_001033057	exon9	c.G1230A	p.Q410Q	CTGTTGCTGCTGC	.	40.0	10.0	28.0	1.0	.	0	9	Atlas-SNP
C1QBP	708	hgsc.bcm.edu	37	17	5336638	5336638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001212	exon5	c.C674T	p.T225I	TTGAGTGTATAAT	.	130.0	11.0	136.0	0.0	.	.	.	Atlas-SNP
SAFB	6294	hgsc.bcm.edu	37	19	5667118	5667118	+	Missense_Mutation	SNP	G	G	T	rs201604799	by1000genomes;alternate_allele	TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_002967	exon18	c.G2396T	p.G799V	GCTGGGGGGGCTA	.	126.0	25.0	124.0	0.0	.	.	.	Atlas-SNP
KRT8	3856	hgsc.bcm.edu	37	12	53298675	53298675	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	KRT8,NS,carcinoma,0,5	KRT8	NM_001256282	exon2	c.T175G	p.S59A	TGCGGGAACCGGG	.	45.0	6.0	32.0	0.0	.	0	5	Atlas-SNP
