Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
HNRNPR	10236	hgsc.bcm.edu	37	1	23637304	23637305	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	HNRNPR	NM_001102398	exon11	c.1554_1555insC	p.P518fs	.	.	135.0	10.0	79.0	0.0	.	56	.	Atlas-Indel
DEK	7913	hgsc.bcm.edu	37	6	18264096	18264096	+	Missense_Mutation	SNP	C	C	G	rs147127829	bycluster;byfrequency;by1000genomes	TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_003472	exon2	c.G123C	p.E41D	CTCCTCCTCGTCG	.	145.0	8.0	113.0	0.0	0.001	.	.	Atlas-SNP
LUC7L3	51747	hgsc.bcm.edu	37	17	48821082	48821082	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_006107	exon6	c.T442A	p.S148T	TTAGGGTCTGAAG	.	209.0	24.0	139.0	0.0	.	.	.	Atlas-SNP
ITPR3	3710	hgsc.bcm.edu	37	6	33652420	33652420	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_002224	exon38	c.C5092G	p.R1698G	CAGAACCGGAAGT	.	158.0	24.0	121.0	0.0	.	.	.	Atlas-SNP
SAFB	6294	hgsc.bcm.edu	37	19	5667118	5667118	+	Missense_Mutation	SNP	G	G	T	rs201604799	by1000genomes;alternate_allele	TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_002967	exon18	c.G2396T	p.G799V	GCTGGGGGGGCTA	.	178.0	27.0	124.0	0.0	.	.	.	Atlas-SNP
ABCC8	6833	hgsc.bcm.edu	37	11	17464362	17464362	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_000352	exon10	c.A1535G	p.Y512C	CAGGCGTACAGCT	.	68.0	4.0	56.0	0.0	.	.	.	Atlas-SNP
B3GALT4	8705	hgsc.bcm.edu	37	6	33245604	33245604	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_003782	exon1	c.G408T	p.G136G	CCAGGGGGATATC	.	85.0	10.0	44.0	0.0	.	.	.	Atlas-SNP
TRIM13	10206	hgsc.bcm.edu	37	13	50588490	50588490	+	RNA	SNP	T	T	C	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	.	.	.	.	TATATATATATAT	.	32.0	6.0	22.0	0.0	.	.	.	Atlas-SNP
RUNX2	860	hgsc.bcm.edu	37	6	45390482	45390482	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	RUNX2_ENST00000352853,NS,carcinoma,0,2	RUNX2_ENST00000352853	NM_001024630	exon3	c.C211G	p.Q71E	CAGCAGCAGGAGG	.	23.0	2.0	21.0	1.0	.	0	2	Atlas-SNP
TRIM13	10206	hgsc.bcm.edu	37	13	50588492	50588492	+	RNA	SNP	T	T	C	rs200626518		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	.	.	.	.	TATATATATATAC	.	30.0	7.0	22.0	0.0	.	.	.	Atlas-SNP
ZNF782	158431	hgsc.bcm.edu	37	9	99581871	99581871	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001001662	exon6	c.G434T	p.C145F	CCCTGGCAAGCAG	.	108.0	8.0	64.0	0.0	.	.	.	Atlas-SNP
TET1	80312	hgsc.bcm.edu	37	10	70412305	70412305	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_030625	exon6	c.C4415G	p.T1472S	TGTACACCGGTAA	.	112.0	13.0	72.0	0.0	.	.	.	Atlas-SNP
ACVR2B	93	hgsc.bcm.edu	37	3	38518867	38518867	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001106	exon2	c.C142T	p.R48C	CTGGAGCGCTGCG	.	87.0	11.0	80.0	0.0	.	.	.	Atlas-SNP
TTF1	7270	hgsc.bcm.edu	37	9	135275424	135275424	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_007344	exon3	c.A1589G	p.Q530R	TCACCTTGTGCTT	.	243.0	21.0	148.0	0.0	.	.	.	Atlas-SNP
EPAS1	2034	hgsc.bcm.edu	37	2	46583327	46583327	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001430	exon3	c.G255T	p.Q85H	TGACCAGCAGATG	.	115.0	5.0	76.0	0.0	.	.	.	Atlas-SNP
HLX	3142	hgsc.bcm.edu	37	1	221054636	221054636	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_021958	exon2	c.C693G	p.N231K	CATTAACGAGGCT	.	206.0	24.0	147.0	0.0	.	.	.	Atlas-SNP
TRIM13	10206	hgsc.bcm.edu	37	13	50588494	50588494	+	RNA	SNP	T	T	C	rs201280640		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	.	.	.	.	TATATATATACAC	.	31.0	8.0	26.0	0.0	.	.	.	Atlas-SNP
UBR5	51366	hgsc.bcm.edu	37	8	103277378	103277378	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_015902	exon53	c.G7551T	p.R2517S	GCCAGGCCTTGGA	.	176.0	16.0	115.0	0.0	.	.	.	Atlas-SNP
FAHD2CP	729234	hgsc.bcm.edu	37	2	96685052	96685052	+	RNA	SNP	T	T	G	rs372044509		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	.	.	.	.	GCAGAGTCCCCAG	.	56.0	8.0	46.0	0.0	.	.	.	Atlas-SNP
CUL4A	8451	hgsc.bcm.edu	37	13	113898807	113898807	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAFG-05A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	207b80ef-28bf-4aa9-9a50-448ae72536f2	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001008895	exon12	c.A1312T	p.I438F	ATCATGATCCTGT	.	265.0	25.0	213.0	0.0	.	.	.	Atlas-SNP
