Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
BBS9	27241	hgsc.bcm.edu	37	7	33407379	33407380	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	BBS9	NM_198428	exon17	c.1694_1695insT	p.G565fs	.	.	116.0	26.0	133.0	0.0	.	194	.	Pindel,Atlas-Indel
MRC2	9902	hgsc.bcm.edu	37	17	60743604	60743604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_006039	exon3	c.C670T	p.R224C	GACGAGCGCTGGG	.	58.0	10.0	53.0	0.0	.	.	.	Atlas-SNP
MYH15	22989	hgsc.bcm.edu	37	3	108189650	108189650	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_014981	exon14	c.G1338C	p.R446S	AAACATCCTTTCA	.	170.0	24.0	140.0	0.0	.	.	.	Atlas-SNP
BRPF1	7862	hgsc.bcm.edu	37	3	9783003	9783003	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_001003694	exon5	c.G1734T	p.E578D	TTCTGAGGATAAG	.	73.0	4.0	67.0	0.0	.	.	.	Atlas-SNP
FMNL2	114793	hgsc.bcm.edu	37	2	153476069	153476069	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	FMNL2,rectum,carcinoma,0,2	FMNL2	NM_052905	exon15	c.C1674A	p.P558P	GCCGCCCCCTCCT	.	77.0	22.0	57.0	0.0	.	0	2	Atlas-SNP
CRAMP1L	57585	hgsc.bcm.edu	37	16	1703072	1703072	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_020825	exon7	c.C952A	p.P318T	CGCCTGCCTCTGA	.	100.0	14.0	83.0	0.0	.	.	.	Atlas-SNP
KRTAP17-1	83902	hgsc.bcm.edu	37	17	39471763	39471763	+	Missense_Mutation	SNP	C	C	T	rs74252500	bycluster	TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_031964	exon1	c.G140A	p.G47D	CCGCAGCCAGAGC	.	39.0	10.0	15.0	0.0	1.000	.	.	Atlas-SNP
ADNP	23394	hgsc.bcm.edu	37	20	49509508	49509508	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_015339	exon5	c.C1743A	p.Y581X	GGCATGGTAAGCA	.	171.0	54.0	108.0	0.0	.	.	.	Atlas-SNP
RTKN2	219790	hgsc.bcm.edu	37	10	63957724	63957724	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_145307	exon12	c.G1773A	p.R591R	TTTCTGCCTTGGA	.	165.0	67.0	154.0	0.0	.	.	.	Atlas-SNP
MYPN	84665	hgsc.bcm.edu	37	10	69881408	69881408	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	MYPN,NS,carcinoma,+2,1	MYPN	NM_032578	exon2	c.A213G	p.E71E	AGAAGAATTAGAC	.	149.0	8.0	179.0	0.0	.	+2	1	Atlas-SNP
PRICKLE2	166336	hgsc.bcm.edu	37	3	64133021	64133021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	PRICKLE2,colon,carcinoma,-1,1	PRICKLE2	NM_198859	exon7	c.C1145T	p.S382F	TGGCTGGACAGGC	.	78.0	35.0	80.0	0.0	.	-1	1	Atlas-SNP
KRTAP9-9	81870	hgsc.bcm.edu	37	17	39411694	39411694	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	KRTAP9-9,NS,carcinoma,+2,1	KRTAP9-9	NM_030975	exon1	c.G57C	p.W19C	CTGCTGGAAGCCC	.	110.0	8.0	68.0	1.0	.	+2	1	Atlas-SNP
HIST1H4A	8359	hgsc.bcm.edu	37	6	26021940	26021940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_003538	exon1	c.G34A	p.G12S	GGTTTGGGTAAGG	.	131.0	13.0	132.0	0.0	.	.	.	Atlas-SNP
OGFR	11054	hgsc.bcm.edu	37	20	61444660	61444660	+	Missense_Mutation	SNP	C	C	A	rs61743079	bycluster	TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	OGFR,NS,neuroblastoma,0,1	OGFR	NM_007346	exon7	c.C1693A	p.R565S	GGCCCCCGCCCGG	.	17.0	2.0	10.0	0.0	0.019	0	1	Atlas-SNP
