Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
RRAGA	10670	hgsc.bcm.edu	37	9	19050445	19050453	+	In_Frame_Del	DEL	TCGACATCT	TCGACATCT	-	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	TCGACATCT	TCGACATCT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	RRAGA	NM_006570	exon1	c.787_795del	p.263_265del	.	.	104.0	40.0	111.0	0.0	.	17	.	Pindel,Atlas-Indel
DCP1B	196513	hgsc.bcm.edu	37	12	2062350	2062350	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	DCP1B,bladder,carcinoma,0,13	DCP1B	NM_152640	exon7	c.G756C	p.Q252H	CTGCTGCTGGTGG	.	87.0	5.0	20.0	1.0	.	0	13	Atlas-SNP
CLEC4M	10332	hgsc.bcm.edu	37	19	7830731	7830731	+	Missense_Mutation	SNP	G	G	A	rs76899402	bycluster	TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	CLEC4M,colon,carcinoma,0,1	CLEC4M	NM_001144908	exon4	c.G422A	p.R141Q	TGACCCGGCTGAA	.	23.0	2.0	38.0	0.0	0.750	0	1	Atlas-SNP
ITPR1	3708	hgsc.bcm.edu	37	3	4774832	4774832	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	ITPR1_ENST00000357086,NS,carcinoma,0,3	ITPR1_ENST00000357086	NM_001168272	exon42	c.C5236A	p.R1746R	TCGGGACGAAGAG	.	127.0	7.0	109.0	0.0	.	0	3	Atlas-SNP
ND4	0	hgsc.bcm.edu	37	MT	11963	11963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	ENST00000361381	exon1	c.G1204A	p.V402I	ATACTAGTCACAG	.	11.0	8.0	18.0	0.0	.	.	.	Atlas-SNP
EBLN2	55096	hgsc.bcm.edu	37	3	73111480	73111480	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_018029	exon1	c.A248C	p.N83T	GGAAAAACAGACA	.	225.0	9.0	158.0	0.0	.	.	.	Atlas-SNP
MIR548F1	100302192	hgsc.bcm.edu	37	1	186287471	186287471	+	RNA	SNP	C	C	A	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	.	.	.	.	AAAAAACAAAAAA	.	64.0	10.0	38.0	0.0	.	.	.	Atlas-SNP
SSPO	23145	hgsc.bcm.edu	37	7	149513025	149513025	+	Missense_Mutation	SNP	C	C	A	rs369846479	alternate_allele	TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_198455	exon77	c.C10928A	p.P3643Q	ACTGCCCGGACCC	.	140.0	15.0	164.0	0.0	.	.	.	Atlas-SNP
PCSK4	54760	hgsc.bcm.edu	37	19	1482012	1482012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_017573	exon15	c.C2014A	p.P672T	AGGATGGGGGACA	.	26.0	4.0	27.0	0.0	.	.	.	Atlas-SNP
RCSD1	92241	hgsc.bcm.edu	37	1	167653179	167653179	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_052862	exon2	c.T49C	p.S17P	TCGGCGTCCCCCT	.	102.0	6.0	83.0	0.0	.	.	.	Atlas-SNP
MIR548F1	100302192	hgsc.bcm.edu	37	1	186287470	186287470	+	RNA	SNP	A	A	C	rs181863318	by1000genomes	TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	.	.	.	.	AAAAAAACAAAAA	.	65.0	4.0	37.0	0.0	0.001	.	.	Atlas-SNP
MLH3	27030	hgsc.bcm.edu	37	14	75508402	75508402	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_014381	exon4	c.T3381C	p.D1127D	CACAGTATCTAGG	.	112.0	25.0	84.0	0.0	.	.	.	Atlas-SNP
GNPAT	8443	hgsc.bcm.edu	37	1	231403537	231403537	+	Silent	SNP	A	A	T	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_014236	exon9	c.A1167T	p.I389I	CCTAATAGTTGCT	.	138.0	35.0	149.0	0.0	.	.	.	Atlas-SNP
TUSC3	7991	hgsc.bcm.edu	37	8	15517060	15517060	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_178234	exon4	c.A471G	p.K157K	TCCAAAAGGCAGA	.	87.0	29.0	72.0	0.0	.	.	.	Atlas-SNP
ACIN1	22985	hgsc.bcm.edu	37	14	23549896	23549896	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_001164814	exon6	c.G822A	p.E274E	CTCCTCCTCTTCT	.	156.0	8.0	109.0	0.0	.	.	.	Atlas-SNP
C3orf49	132200	hgsc.bcm.edu	37	3	63823517	63823517	+	RNA	SNP	T	T	G	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	.	.	.	.	TAGTTTTAAGGAA	.	56.0	16.0	38.0	0.0	.	.	.	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	37	7	100678918	100678918	+	Silent	SNP	G	G	A	rs200627718	byfrequency	TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	MUC17,colon,carcinoma,+1,1	MUC17	NM_001040105	exon3	c.G4221A	p.P1407P	CACGCCGGTAGTC	.	148.0	7.0	109.0	2.0	0.002	+1	1	Atlas-SNP
SRCAP	10847	hgsc.bcm.edu	37	16	30748508	30748508	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_006662	exon34	c.A7147T	p.K2383X	CGCAGTAAAAAGG	.	89.0	12.0	104.0	0.0	.	.	.	Atlas-SNP
GNAS	2778	hgsc.bcm.edu	37	20	57485046	57485046	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_080425	exon11	c.C2809G	p.Q937E	AACAAGCAAGATC	.	104.0	25.0	107.0	0.0	.	.	.	Atlas-SNP
SOS1	6654	hgsc.bcm.edu	37	2	39224171	39224171	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_005633	exon19	c.T2973A	p.F991L	GTTTTCAAAGAAC	.	235.0	23.0	87.0	0.0	.	.	.	Atlas-SNP
YARS2	51067	hgsc.bcm.edu	37	12	32908276	32908276	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_001040436	exon1	c.A533G	p.Q178R	TGCTTCTGGTACC	.	396.0	54.0	172.0	0.0	.	.	.	Atlas-SNP
CCDC40	55036	hgsc.bcm.edu	37	17	78023947	78023947	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_017950	exon7	c.C1024T	p.Q342X	CACCTGCAGAAGC	.	86.0	18.0	104.0	0.0	.	.	.	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	37	7	100678866	100678866	+	Missense_Mutation	SNP	A	A	C	rs77700763	bycluster	TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	MUC17,trunk,malignant_melanoma,0,1	MUC17	NM_001040105	exon3	c.A4169C	p.N1390T	ACTCAAATCCTAG	.	128.0	8.0	100.0	1.0	.	0	1	Atlas-SNP
NT5C1B	93034	hgsc.bcm.edu	37	2	18765887	18765887	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	NT5C1B,NS,carcinoma,0,1	NT5C1B	NM_001199087	exon5	c.G847C	p.E283Q	GCTGCTCGGACAG	.	140.0	10.0	79.0	0.0	.	0	1	Atlas-SNP
FBXW5	54461	hgsc.bcm.edu	37	9	139835465	139835465	+	Missense_Mutation	SNP	C	C	T	rs140846203		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	FBXW5,NS,carcinoma,-1,1	FBXW5	NM_018998	exon9	c.G1616A	p.R539H	GGGGAGCGCCAGG	.	92.0	28.0	66.0	0.0	0.000	-1	1	Atlas-SNP
TNPO1	3842	hgsc.bcm.edu	37	5	72168496	72168496	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_002270	exon7	c.T627A	p.F209L	TCAGTTTATCATC	.	97.0	79.0	129.0	0.0	.	.	.	Atlas-SNP
SUPT20HL1	100130302	hgsc.bcm.edu	37	X	24382443	24382443	+	Silent	SNP	A	A	T	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_001136234	exon1	c.A1566T	p.L522L	TGCTCTAGCTGCT	.	135.0	10.0	76.0	0.0	.	.	.	Atlas-SNP
SYCE2	256126	hgsc.bcm.edu	37	19	13011447	13011447	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_001105578	exon4	c.G322C	p.E108Q	ATTTCTCTGTCAG	.	103.0	17.0	119.0	0.0	.	.	.	Atlas-SNP
tRNA-Trp	0	hgsc.bcm.edu	37	MT	5552	5552	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	.	.	.	.	AAAGCCCTCAGTA	.	112.0	101.0	101.0	0.0	.	.	.	Atlas-SNP
PKD2L1	9033	hgsc.bcm.edu	37	10	102052770	102052770	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_016112	exon11	c.G1815A	p.V605V	CTTCTGCACATCC	.	223.0	61.0	227.0	0.0	.	.	.	Atlas-SNP
ZNF12	7559	hgsc.bcm.edu	37	7	6730638	6730638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_016265	exon5	c.G1935A	p.M645I	GTATGACATCCGA	.	137.0	7.0	114.0	0.0	.	.	.	Atlas-SNP
