Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
EGR3	1960	hgsc.bcm.edu	37	8	22548865	22548865	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	EGR3	NM_004430	exon2	c.286delA	p.N96fs	.	.	121.0	11.0	124.0	0.0	.	33	.	Atlas-Indel
PPP1R3A	5506	hgsc.bcm.edu	37	7	113518008	113518008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_002711	exon4	c.G3139A	p.D1047N	AGCTGTCAGATTC	.	103.0	6.0	109.0	0.0	.	.	.	Atlas-SNP
CHM	1121	hgsc.bcm.edu	37	X	85218961	85218961	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_000390	exon5	c.C411T	p.A137A	CAGGAAGGCAGAA	.	125.0	33.0	101.0	0.0	.	.	.	Atlas-SNP
MCPH1	79648	hgsc.bcm.edu	37	8	6302344	6302344	+	Silent	SNP	G	G	A	rs201084851	bycluster;by1000genomes	TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	MCPH1_ENST00000344683,colon,carcinoma,+1,1	MCPH1_ENST00000344683	NM_001172574	exon8	c.G1101A	p.P367P	ACCTCCGAAGGAA	.	127.0	8.0	163.0	0.0	.	+1	1	Atlas-SNP
TULP3	7289	hgsc.bcm.edu	37	12	3040319	3040319	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_003324	exon6	c.A609C	p.R203S	AGTAAGATGTCGG	.	189.0	22.0	103.0	0.0	.	.	.	Atlas-SNP
FAM170A	340069	hgsc.bcm.edu	37	5	118965473	118965473	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_182761	exon1	c.C10T	p.R4X	AAACGACGACAAA	.	101.0	20.0	74.0	0.0	.	.	.	Atlas-SNP
COL11A1	1301	hgsc.bcm.edu	37	1	103488447	103488447	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	COL11A1,NS,carcinoma,+2,1	COL11A1	NM_080629	exon8	c.G1132T	p.D378Y	TGCCGTCTATTTC	.	125.0	15.0	147.0	0.0	.	+2	1	Atlas-SNP
RNR2	6053	hgsc.bcm.edu	37	MT	2596	2596	+	RNA	SNP	G	G	A	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	.	.	.	.	AAGGTAGCATAAT	.	97.0	12.0	66.0	0.0	.	.	.	Atlas-SNP
WDR25	79446	hgsc.bcm.edu	37	14	100847625	100847625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_001161476	exon2	c.G364A	p.V122I	AGCCATGTTCCAG	.	145.0	17.0	115.0	0.0	.	.	.	Atlas-SNP
KRT23	25984	hgsc.bcm.edu	37	17	39092824	39092824	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_015515	exon2	c.C32A	p.P11H	GCCGAGGGGGTCT	.	200.0	22.0	236.0	0.0	.	.	.	Atlas-SNP
ITSN1	6453	hgsc.bcm.edu	37	21	35144498	35144498	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_001001132	exon12	c.G1176A	p.E392E	GCAGGAGAGGAAG	.	165.0	17.0	121.0	0.0	.	.	.	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1093393	1093393	+	Missense_Mutation	SNP	G	G	A	rs199525790		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	MUC2_ENST00000441003,NS,carcinoma,0,2	MUC2_ENST00000441003	NM_002457	exon30	c.G5212A	p.G1738S	CCCACCGGCACAC	.	27.0	4.0	45.0	0.0	.	0	2	Atlas-SNP
OLFML3	56944	hgsc.bcm.edu	37	1	114524091	114524091	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	OLFML3,NS,carcinoma,+2,1	OLFML3	NM_020190	exon3	c.C921T	p.D307D	ACTGGACACAGAG	.	115.0	15.0	95.0	0.0	.	+2	1	Atlas-SNP
SUPT16H	11198	hgsc.bcm.edu	37	14	21830430	21830430	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_007192	exon15	c.T1719C	p.Y573Y	TGGGCAATAAAAG	.	89.0	6.0	82.0	0.0	.	.	.	Atlas-SNP
DPRXP4	503645	hgsc.bcm.edu	37	17	29302829	29302829	+	RNA	SNP	T	T	A	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	.	.	.	.	TGCAGATGACTTC	.	89.0	14.0	97.0	0.0	.	.	.	Atlas-SNP
MAP3K4	4216	hgsc.bcm.edu	37	6	161533755	161533755	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_005922	exon25	c.G4575A	p.A1525A	GCGTGCGGCCGAC	.	130.0	7.0	153.0	0.0	.	.	.	Atlas-SNP
PDE6A	5145	hgsc.bcm.edu	37	5	149323894	149323894	+	Missense_Mutation	SNP	C	C	T	rs147159579	bycluster;byfrequency	TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_000440	exon1	c.G343A	p.V115I	TGTGGACATTGAA	.	122.0	13.0	111.0	0.0	0.001	.	.	Atlas-SNP
SLC39A10	57181	hgsc.bcm.edu	37	2	196581655	196581655	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_020342	exon7	c.C1991T	p.T664I	AAGAAACAGGAAT	.	107.0	10.0	122.0	0.0	.	.	.	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	37	11	1271589	1271589	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_002458	exon31	c.C13479T	p.S4493S	CAGCTCCAAAGCC	.	366.0	42.0	343.0	0.0	.	.	.	Atlas-SNP
ATP6	0	hgsc.bcm.edu	37	MT	9035	9035	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	ENST00000361899	exon1	c.T509C	p.L170P	ACCTACTCATGCA	.	40.0	22.0	15.0	0.0	.	.	.	Atlas-SNP
RAI1	10743	hgsc.bcm.edu	37	17	17697096	17697096	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_030665	exon3	c.G834C	p.Q278H	TGACCAGCAGCAG	.	68.0	4.0	67.0	0.0	.	.	.	Atlas-SNP
CASD1	64921	hgsc.bcm.edu	37	7	94183874	94183874	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_022900	exon17	c.A2114T	p.K705I	TTGGAAAAATTTC	.	115.0	15.0	93.0	0.0	.	.	.	Atlas-SNP
ALPK3	57538	hgsc.bcm.edu	37	15	85401530	85401530	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_020778	exon6	c.G4167A	p.E1389E	AAGGGAGAGCCCC	.	23.0	5.0	25.0	0.0	.	.	.	Atlas-SNP
ARNT	405	hgsc.bcm.edu	37	1	150785719	150785719	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_001668	exon21	c.C2209G	p.R737G	TTGAACGATGATG	.	169.0	28.0	149.0	0.0	.	.	.	Atlas-SNP
NBPF10	100132406	hgsc.bcm.edu	37	1	145293535	145293535	+	Missense_Mutation	SNP	C	C	G	rs55936365		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	NBPF10,NS,carcinoma,0,2	NBPF10	NM_001039703	exon1	c.C130G	p.L44V	TGTTTTCTAACTC	.	49.0	3.0	73.0	2.0	.	0	2	Atlas-SNP
