Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
KRTAP4-5	85289	hgsc.bcm.edu	37	17	39305782	39305783	+	In_Frame_Ins	INS	-	-	GCTGGGGCGGCAGCA	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	KRTAP4-5	NM_033188	exon1	c.238_239insTGCTGCCGCCCCAGC	p.C80delinsCCRPSC	.	.	48.0	15.0	38.0	0.0	.	34	.	Atlas-Indel
BAZ2A	11176	hgsc.bcm.edu	37	12	56995665	56995665	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	BAZ2A	NM_013449	exon20	c.3743delT	p.L1248fs	.	.	71.0	13.0	79.0	0.0	.	263	.	Atlas-Indel
MLL4	8085	hgsc.bcm.edu	37	19	36211509	36211516	+	Frame_Shift_Del	DEL	TTCGACAT	TTCGACAT	-	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	TTCGACAT	TTCGACAT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	MLL4	NM_014727	exon3	c.1259_1266del	p.420_422del	.	.	82.0	10.0	108.0	0.0	.	229	.	Atlas-Indel
PCDHGA8	9708	hgsc.bcm.edu	37	5	140773368	140773368	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_014004	exon1	c.A988G	p.R330G	CTGGGGAGGACCA	.	219.0	42.0	207.0	0.0	.	.	.	Atlas-SNP
NXF4	55999	hgsc.bcm.edu	37	X	101819124	101819124	+	RNA	SNP	G	G	C	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	.	.	.	.	TCTCCTGTCTCTC	.	105.0	8.0	83.0	0.0	.	.	.	Atlas-SNP
MED16	10025	hgsc.bcm.edu	37	19	871976	871976	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_005481	exon12	c.A2048T	p.Q683L	CTGTCCTGGGTAT	.	85.0	4.0	75.0	0.0	.	.	.	Atlas-SNP
GRK1	6011	hgsc.bcm.edu	37	13	114321726	114321726	+	Missense_Mutation	SNP	G	G	A	rs184639495	bycluster;by1000genomes	TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_002929	exon1	c.G25A	p.V9M	GAGACCGTGGTGG	.	38.0	9.0	78.0	0.0	0.000	.	.	Atlas-SNP
SPIB	6689	hgsc.bcm.edu	37	19	50926238	50926238	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_001243999	exon4	c.C283A	p.L95M	CCCAGCCTGGAGG	.	158.0	20.0	235.0	0.0	.	.	.	Atlas-SNP
VSIG4	11326	hgsc.bcm.edu	37	X	65253547	65253547	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_001100431	exon2	c.G181T	p.G61C	CTGAGCCACGTTG	.	179.0	54.0	153.0	0.0	.	.	.	Atlas-SNP
CARD8	22900	hgsc.bcm.edu	37	19	48715122	48715122	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_001184900	exon11	c.G1459T	p.E487X	CCAGCTCCTTCTC	.	195.0	10.0	275.0	0.0	.	.	.	Atlas-SNP
CDRT15P1	94158	hgsc.bcm.edu	37	17	13928089	13928089	+	RNA	SNP	C	C	T	rs199604193		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	.	.	.	.	CAGACACGTGGTG	.	423.0	47.0	439.0	0.0	0.001	.	.	Atlas-SNP
ACBD3	64746	hgsc.bcm.edu	37	1	226334321	226334321	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_022735	exon8	c.A1577G	p.Y526C	CTAGTATAATAGA	.	124.0	16.0	101.0	0.0	.	.	.	Atlas-SNP
TMEM55A	55529	hgsc.bcm.edu	37	8	92033608	92033608	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_018710	exon2	c.C131A	p.A44D	GCAATGGCTGTAT	.	56.0	9.0	49.0	0.0	.	.	.	Atlas-SNP
ACTR8	93973	hgsc.bcm.edu	37	3	53910015	53910015	+	Missense_Mutation	SNP	C	C	T	rs375966881		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_022899	exon7	c.G871A	p.V291I	AGCATACACTTGT	.	159.0	24.0	192.0	0.0	.	.	.	Atlas-SNP
ANG	283	hgsc.bcm.edu	37	14	21162164	21162164	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_001097577	exon2	c.G441A	p.P147P	TCGTCCGTAACCA	.	172.0	11.0	174.0	0.0	.	.	.	Atlas-SNP
DIRAS3	9077	hgsc.bcm.edu	37	1	68512245	68512245	+	RNA	SNP	T	T	G	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	.	.	.	.	ACGTTTTCTACAC	.	65.0	18.0	61.0	0.0	.	.	.	Atlas-SNP
CARD8	22900	hgsc.bcm.edu	37	19	48715121	48715121	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_001184900	exon11	c.A1460T	p.E487V	ACCAGCTCCTTCT	.	196.0	10.0	274.0	0.0	.	.	.	Atlas-SNP
GOLGA6B	55889	hgsc.bcm.edu	37	15	72954932	72954932	+	Missense_Mutation	SNP	G	G	A	rs371637348		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	GOLGA6B,NS,carcinoma,+1,1	GOLGA6B	NM_018652	exon11	c.G1187A	p.R396Q	GGCTGCGAAAGGA	.	292.0	12.0	277.0	1.0	.	+1	1	Atlas-SNP
FAM114A2	10827	hgsc.bcm.edu	37	5	153381928	153381928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_018691	exon11	c.G1139A	p.R380Q	AGGCTCCGGATTG	.	174.0	9.0	163.0	0.0	.	.	.	Atlas-SNP
CLIP1	6249	hgsc.bcm.edu	37	12	122862115	122862115	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_002956	exon3	c.T478C	p.S160P	AGGGGGAGGAAGA	.	115.0	5.0	125.0	0.0	.	.	.	Atlas-SNP
PLEC	5339	hgsc.bcm.edu	37	8	144991455	144991455	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_201380	exon32	c.G12945T	p.W4315C	CTCCTCCCACTCG	.	33.0	4.0	43.0	0.0	.	.	.	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105412772	105412772	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	AHNAK2_ENST00000333244,NS,carcinoma,+2,1	AHNAK2_ENST00000333244	NM_138420	exon7	c.C9016T	p.P3006S	CCTTCGGCGCAGA	.	209.0	49.0	220.0	0.0	.	+2	1	Atlas-SNP
BASP1P1	646201	hgsc.bcm.edu	37	13	23471388	23471388	+	RNA	SNP	A	A	G	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	.	.	.	.	AGAGAGAGGAGAG	.	37.0	5.0	45.0	0.0	.	.	.	Atlas-SNP
USP40	55230	hgsc.bcm.edu	37	2	234394589	234394589	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_018218	exon28	c.A3265G	p.I1089V	CAGGGATGCGCAC	.	114.0	11.0	140.0	0.0	.	.	.	Atlas-SNP
