Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
KDM6B	23135	hgsc.bcm.edu	37	17	7751016	7751017	+	Frame_Shift_Ins	INS	-	-	CC	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	KDM6B,bladder,carcinoma,0,1	KDM6B	NM_001080424	exon11	c.1410_1411insCC	p.P470fs	.	.	167.0	14.0	125.0	0.0	.	95	.	Atlas-Indel
HLA-H	3136	hgsc.bcm.edu	37	6	29856882	29856882	+	RNA	SNP	C	C	G	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	.	.	.	.	CAGCCTCCACTCA	.	66.0	5.0	42.0	0.0	.	.	.	Atlas-SNP
FAM194B	220081	hgsc.bcm.edu	37	13	46170735	46170735	+	Missense_Mutation	SNP	C	C	T	rs28460344		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_182542	exon3	c.G406A	p.E136K	CTTCCTCCTCCAG	.	178.0	52.0	136.0	0.0	.	.	.	Atlas-SNP
SEPT6	23157	hgsc.bcm.edu	37	X	118774680	118774680	+	Silent	SNP	C	C	G	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_145802	exon6	c.G762C	p.R254R	ATACTGCCGCGCC	.	149.0	12.0	78.0	0.0	.	.	.	Atlas-SNP
AIM1L	55057	hgsc.bcm.edu	37	1	26671719	26671719	+	Missense_Mutation	SNP	C	C	T	rs201245727		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_001039775	exon2	c.G1430A	p.R477Q	TCCTTCCGGGTGG	.	43.0	7.0	23.0	0.0	.	.	.	Atlas-SNP
FAM63B	54629	hgsc.bcm.edu	37	15	59124081	59124081	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	FAM63B,NS,carcinoma,+1,1	FAM63B	NM_001040450	exon6	c.G1334T	p.R445L	TCTTTCGGAATAA	.	92.0	4.0	86.0	0.0	.	+1	1	Atlas-SNP
WDR63	126820	hgsc.bcm.edu	37	1	85573731	85573731	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_145172	exon15	c.G1569A	p.W523X	TTTTTGGGATATT	.	56.0	14.0	68.0	0.0	.	.	.	Atlas-SNP
TNK1	8711	hgsc.bcm.edu	37	17	7290430	7290430	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_001251902	exon9	c.G1369T	p.G457C	CACAGAGGCACCC	.	124.0	7.0	142.0	0.0	.	.	.	Atlas-SNP
FAM194B	220081	hgsc.bcm.edu	37	13	46170742	46170742	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	FAM194B,colon,carcinoma,-2,1	FAM194B	NM_182542	exon3	c.T399C	p.H133H	CTCCAGATGCTCT	.	196.0	16.0	223.0	1.0	.	-2	1	Atlas-SNP
CYP1A1	1543	hgsc.bcm.edu	37	15	75015057	75015057	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_000499	exon2	c.G382T	p.G128X	CTGGTCCAGAGTC	.	99.0	26.0	88.0	0.0	.	.	.	Atlas-SNP
FAM194B	220081	hgsc.bcm.edu	37	13	46170728	46170728	+	Missense_Mutation	SNP	T	T	C	rs45625342	bycluster	TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	FAM194B,NS,carcinoma,0,1	FAM194B	NM_182542	exon3	c.A413G	p.E138G	AGATACTCTTCCT	.	187.0	24.0	136.0	0.0	.	0	1	Atlas-SNP
GRIN3B	116444	hgsc.bcm.edu	37	19	1004822	1004822	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_138690	exon3	c.C1322T	p.A441V	GCCCAGCGGGGCA	.	84.0	4.0	77.0	0.0	.	.	.	Atlas-SNP
RTKN2	219790	hgsc.bcm.edu	37	10	63976914	63976914	+	Missense_Mutation	SNP	G	G	A	rs76810894	bycluster	TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_145307	exon9	c.C983T	p.A328V	ACTTTAGCTTCAA	.	97.0	9.0	105.0	0.0	.	.	.	Atlas-SNP
TBCE	6905	hgsc.bcm.edu	37	1	235577756	235577756	+	Missense_Mutation	SNP	C	C	G	rs144747353	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_003193	exon4	c.C194G	p.T65R	ACCCGACAGGAGG	.	59.0	7.0	70.0	0.0	.	.	.	Atlas-SNP
MLLT3	4300	hgsc.bcm.edu	37	9	20414373	20414373	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	MLLT3,NS,carcinoma,0,4	MLLT3	NM_004529	exon5	c.C471T	p.S157S	GCTGCTGCTACTG	.	60.0	5.0	49.0	1.0	.	0	4	Atlas-SNP
FAM182B	728882	hgsc.bcm.edu	37	20	25755549	25755549	+	RNA	SNP	C	C	A	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	FAM182B,colon,carcinoma,0,1	FAM182B	.	.	.	.	CTGCAGCCTTCCT	.	65.0	6.0	70.0	2.0	.	0	1	Atlas-SNP
RTKN2	219790	hgsc.bcm.edu	37	10	63976918	63976918	+	Missense_Mutation	SNP	C	C	T	rs115357868	bycluster;byfrequency;by1000genomes	TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_145307	exon9	c.G979A	p.E327K	TAGCTTCAATTTC	.	108.0	12.0	105.0	0.0	0.001	.	.	Atlas-SNP
MARS	4141	hgsc.bcm.edu	37	12	57883073	57883073	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_004990	exon3	c.G224A	p.W75X	CTGGCTGGGAGCA	.	125.0	24.0	114.0	0.0	.	.	.	Atlas-SNP
PCDH18	54510	hgsc.bcm.edu	37	4	138450831	138450831	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_019035	exon1	c.T2412C	p.S804S	CACCAAACTGTTG	.	112.0	55.0	123.0	0.0	.	.	.	Atlas-SNP
SPESP1	246777	hgsc.bcm.edu	37	15	69238736	69238736	+	Missense_Mutation	SNP	G	G	A	rs142183563	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_145658	exon2	c.G863A	p.R288Q	TAGGACGAACAAG	.	170.0	14.0	165.0	0.0	.	.	.	Atlas-SNP
KCNK7	10089	hgsc.bcm.edu	37	11	65363219	65363219	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_005714	exon1	c.C25T	p.R9X	CGTATCGGGACCA	.	102.0	6.0	111.0	0.0	.	.	.	Atlas-SNP
GTF2A1	2957	hgsc.bcm.edu	37	14	81670290	81670290	+	Silent	SNP	A	A	T	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_015859	exon3	c.T291A	p.P97P	TTGCTGAGGTACT	.	93.0	31.0	111.0	0.0	.	.	.	Atlas-SNP
SAGE1	55511	hgsc.bcm.edu	37	X	134993829	134993829	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_018666	exon18	c.G2238C	p.E746D	ACCAGAGCTGATA	.	255.0	49.0	141.0	0.0	.	.	.	Atlas-SNP
