Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
TOP1	7150	hgsc.bcm.edu	37	20	39751878	39751894	+	Frame_Shift_Del	DEL	ACCCAGCGGGAGAAGTT	ACCCAGCGGGAGAAGTT	-	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	ACCCAGCGGGAGAAGTT	ACCCAGCGGGAGAAGTT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	TOP1	NM_003286	exon21	c.2238_2254del	p.746_752del	.	.	87.0	17.0	119.0	0.0	.	71	.	Pindel,Atlas-Indel
RALGAPA1	253959	hgsc.bcm.edu	37	14	36194331	36194332	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	RALGAPA1	NM_014990	exon14	c.1765_1766del	p.589_589del	.	.	236.0	38.0	195.0	0.0	.	289	.	Atlas-Indel
KIAA1324L	222223	hgsc.bcm.edu	37	7	86577164	86577164	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_001142749	exon3	c.T385G	p.S129A	CCAAGGAATAGGT	.	151.0	41.0	139.0	0.0	.	.	.	Atlas-SNP
KAT6B	23522	hgsc.bcm.edu	37	10	76781869	76781869	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	MYST4,colon,carcinoma,0,2	MYST4	NM_012330	exon16	c.G3252A	p.E1084E	AGAGGAGGAAGAA	.	116.0	10.0	119.0	0.0	.	0	2	Atlas-SNP
C12orf40	283461	hgsc.bcm.edu	37	12	40076502	40076502	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	C12orf40,NS,carcinoma,+1,1	C12orf40	NM_001031748	exon8	c.A776G	p.Y259C	CAGACTACATTAC	.	101.0	24.0	79.0	0.0	.	+1	1	Atlas-SNP
LRRK2	120892	hgsc.bcm.edu	37	12	40757322	40757322	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_198578	exon48	c.C7147T	p.L2383F	GAAAAACTCTGTG	.	131.0	32.0	118.0	0.0	.	.	.	Atlas-SNP
TRIP12	9320	hgsc.bcm.edu	37	2	230668944	230668944	+	Splice_Site	SNP	C	C	G	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_004238	exon19	c.2426-1G>C	.	ATCCACCTATTAC	.	258.0	36.0	243.0	0.0	.	.	.	Atlas-SNP
ACSM3	6296	hgsc.bcm.edu	37	16	20796358	20796358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_005622	exon8	c.C1072T	p.P358S	ATTACCCCTGACG	.	80.0	7.0	99.0	0.0	.	.	.	Atlas-SNP
FAM194B	220081	hgsc.bcm.edu	37	13	46170735	46170735	+	Missense_Mutation	SNP	C	C	T	rs28460344		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_182542	exon3	c.G406A	p.E136K	CTTCCTCCTCCAG	.	150.0	11.0	98.0	0.0	.	.	.	Atlas-SNP
ZZEF1	23140	hgsc.bcm.edu	37	17	4016010	4016010	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_015113	exon5	c.C959T	p.A320V	CCTACAGCTACTG	.	118.0	8.0	121.0	0.0	.	.	.	Atlas-SNP
ULBP2	80328	hgsc.bcm.edu	37	6	150267564	150267564	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_025217	exon3	c.A406T	p.S136C	CACAGCAGTGGAT	.	84.0	11.0	170.0	0.0	.	.	.	Atlas-SNP
BANK1	55024	hgsc.bcm.edu	37	4	102839288	102839288	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_017935	exon7	c.C1148A	p.A383E	ACCCCGCACATAT	.	195.0	10.0	247.0	0.0	.	.	.	Atlas-SNP
KAT6B	23522	hgsc.bcm.edu	37	10	76781872	76781872	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_012330	exon16	c.A3255G	p.E1085E	GGAGGAAGAAGAG	.	122.0	9.0	121.0	0.0	.	.	.	Atlas-SNP
DLG2	1740	hgsc.bcm.edu	37	11	83544668	83544668	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	DLG2_ENST00000418306,NS,carcinoma,+1,8	DLG2_ENST00000418306	NM_001142699	exon17	c.C1711A	p.Q571K	GGATCTGGTCTCC	.	86.0	5.0	91.0	0.0	.	+1	8	Atlas-SNP
CHAC2	494143	hgsc.bcm.edu	37	2	54001465	54001465	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_001008708	exon3	c.G358A	p.G120S	TATCTTGGTCCTG	.	198.0	10.0	175.0	0.0	.	.	.	Atlas-SNP
PTMA	5757	hgsc.bcm.edu	37	2	232577559	232577559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	PTMA,NS,carcinoma,0,2	PTMA	NM_001099285	exon5	c.T334C	p.X112Q	GATGACTAGACAG	.	68.0	3.0	50.0	0.0	.	0	2	Atlas-SNP
FAM194B	220081	hgsc.bcm.edu	37	13	46170737	46170737	+	Missense_Mutation	SNP	T	T	C	rs117004691	bycluster	TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_182542	exon3	c.A404G	p.E135G	TCCTCCTCCAGAT	.	145.0	11.0	97.0	0.0	.	.	.	Atlas-SNP
KDM3A	55818	hgsc.bcm.edu	37	2	86707433	86707433	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_001146688	exon16	c.T2460C	p.P820P	ATCTCCTCTAAAC	.	79.0	6.0	75.0	0.0	.	.	.	Atlas-SNP
PHF17	79960	hgsc.bcm.edu	37	4	129789057	129789057	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_199320	exon10	c.G1550T	p.R517L	TTAAACGGTCTGT	.	63.0	12.0	75.0	0.0	.	.	.	Atlas-SNP
ADORA1	134	hgsc.bcm.edu	37	1	203098167	203098167	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_001048230	exon2	c.C198T	p.A66A	CCTCGCCATCCTC	.	191.0	13.0	86.0	0.0	.	.	.	Atlas-SNP
NCAPH	23397	hgsc.bcm.edu	37	2	97033084	97033084	+	Silent	SNP	G	G	T	rs149403246	alternate_allele	TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_015341	exon15	c.G1971T	p.A657A	GACAGCGCTCTCC	.	121.0	5.0	94.0	0.0	.	.	.	Atlas-SNP
KAT6B	23522	hgsc.bcm.edu	37	10	76781860	76781860	+	Missense_Mutation	SNP	A	A	C	rs11001248	bycluster	TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_012330	exon16	c.A3243C	p.E1081D	GGAGGAAGAAGAG	.	88.0	12.0	56.0	0.0	.	.	.	Atlas-SNP
ARFGEF1	10565	hgsc.bcm.edu	37	8	68208839	68208839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	ARFGEF1,NS,carcinoma,+1,1	ARFGEF1	NM_006421	exon5	c.C466T	p.L156F	CAGTAAGTAAAGC	.	97.0	20.0	97.0	0.0	.	+1	1	Atlas-SNP
COG4	25839	hgsc.bcm.edu	37	16	70515315	70515315	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_015386	exon18	c.C2182A	p.R728R	TGTCTCGGATGGT	.	74.0	4.0	89.0	0.0	.	.	.	Atlas-SNP
PDYN	5173	hgsc.bcm.edu	37	20	1961480	1961480	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_001190898	exon4	c.A254C	p.K85T	ACCGACTTGCTCC	.	144.0	48.0	177.0	0.0	.	.	.	Atlas-SNP
MAG	4099	hgsc.bcm.edu	37	19	35800891	35800891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_080600	exon8	c.G1346A	p.R449H	CATCGCGCAATGT	.	79.0	11.0	50.0	0.0	.	.	.	Atlas-SNP
KCTD8	386617	hgsc.bcm.edu	37	4	44449883	44449883	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_198353	exon1	c.G658C	p.V220L	CGCGCACGGTGGT	.	29.0	9.0	29.0	0.0	.	.	.	Atlas-SNP
SLC1A2	6506	hgsc.bcm.edu	37	11	35440503	35440503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_004171	exon1	c.C11T	p.T4M	CCTTCCGTAGATG	.	160.0	47.0	169.0	0.0	.	.	.	Atlas-SNP
