Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
KRTAP9-1	728318	hgsc.bcm.edu	37	17	39346593	39346595	+	In_Frame_Del	DEL	CCT	CCT	-	rs377187211	bycluster	TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	CCT	CCT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	KRTAP9-1_ENST00000398470,colon,carcinoma,0,2	KRTAP9-1	NM_001190460	exon1	c.454_456del	p.152_152del	.	.	77.0	25.0	52.0	0.0	.	34	.	Atlas-Indel
KIAA0040	9674	hgsc.bcm.edu	37	1	175129933	175129934	+	Frame_Shift_Ins	INS	-	-	CATC	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	KIAA0040,colon,carcinoma,0,1	KIAA0040	NM_001162893	exon5	c.217_218insGATG	p.K73fs	.	.	135.0	11.0	76.0	0.0	.	2	.	Atlas-Indel
TNIP1	10318	hgsc.bcm.edu	37	5	150436337	150436337	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	.	NM_001252385	exon6	c.C617A	p.S206Y	AGAATGGAGGTGC	.	77.0	12.0	98.0	0.0	.	.	.	Atlas-SNP
TAF3	83860	hgsc.bcm.edu	37	10	8006560	8006560	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	.	NM_031923	exon3	c.C1087T	p.Q363X	CAAATACAGACAC	.	109.0	15.0	90.0	0.0	.	.	.	Atlas-SNP
PRELP	5549	hgsc.bcm.edu	37	1	203453089	203453089	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	PRELP,caecum,carcinoma,0,1	PRELP	NM_201348	exon2	c.C777T	p.N259N	CCCTAACGGATAC	.	207.0	26.0	129.0	0.0	.	0	1	Atlas-SNP
KRTAP9-1	728318	hgsc.bcm.edu	37	17	39346594	39346594	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	KRTAP9-1_ENST00000398470,colon,carcinoma,+2,2	KRTAP9-1_ENST00000398470	NM_001190460	exon1	c.C456T	p.T152T	GCCCACCTGCTGT	.	55.0	4.0	51.0	0.0	.	+2	2	Atlas-SNP
KRTAP9-1	728318	hgsc.bcm.edu	37	17	39346622	39346622	+	Missense_Mutation	SNP	T	T	A	rs79470847	bycluster	TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	KRTAP9-1_ENST00000398470,caecum,carcinoma,0,2	KRTAP9-1_ENST00000398470	NM_001190460	exon1	c.T484A	p.C162S	CAGCCTTGCTGCC	.	93.0	31.0	49.0	0.0	0.500	0	2	Atlas-SNP
KRTAP9-1	728318	hgsc.bcm.edu	37	17	39346591	39346591	+	Silent	SNP	C	C	T	rs76923645		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	KRTAP9-1_ENST00000398470,caecum,carcinoma,0,2	KRTAP9-1_ENST00000398470	NM_001190460	exon1	c.C453T	p.P151P	CCAGCCCACCTGC	.	76.0	25.0	52.0	0.0	0.500	0	2	Atlas-SNP
TMEM62	80021	hgsc.bcm.edu	37	15	43470879	43470879	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	.	NM_024956	exon12	c.G1456A	p.V486M	TATTCTGTGTTGT	.	142.0	16.0	75.0	0.0	.	.	.	Atlas-SNP
SLC1A7	6512	hgsc.bcm.edu	37	1	53580475	53580475	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	.	NM_006671	exon3	c.G386A	p.G129E	GGCTTCCCACTCT	.	140.0	8.0	89.0	0.0	.	.	.	Atlas-SNP
MEF2A	4205	hgsc.bcm.edu	37	15	100211846	100211846	+	Missense_Mutation	SNP	G	G	A	rs75705863	bycluster	TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	MEF2A_ENST00000354410,NS,carcinoma,+1,1	MEF2A_ENST00000354410	NM_005587	exon5	c.G380A	p.R127Q	TGATGCGGAATCA	.	54.0	4.0	23.0	1.0	.	+1	1	Atlas-SNP
TIMM44	10469	hgsc.bcm.edu	37	19	7998431	7998431	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	.	NM_006351	exon7	c.C708T	p.H236H	GTCCTTGTGCAGC	.	169.0	29.0	162.0	0.0	.	.	.	Atlas-SNP
ALOX12B	242	hgsc.bcm.edu	37	17	7982769	7982769	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	.	NM_001139	exon8	c.C1016T	p.P339L	CAGAGGGGGGCGC	.	197.0	34.0	201.0	0.0	.	.	.	Atlas-SNP
RAD23A	5886	hgsc.bcm.edu	37	19	13058807	13058807	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	RAD23A,NS,carcinoma,+1,1	RAD23A	NM_005053	exon2	c.T218A	p.V73D	TTGTGGTCGTCAT	.	58.0	8.0	62.0	0.0	.	+1	1	Atlas-SNP
TYRO3	7301	hgsc.bcm.edu	37	15	41865666	41865666	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	.	NM_006293	exon17	c.2145+1G>T	.	GACGTGGTGAGCA	.	121.0	11.0	90.0	0.0	.	.	.	Atlas-SNP
ND1	10625	hgsc.bcm.edu	37	MT	4076	4076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	.	ENST00000361390	exon1	c.C770T	p.T257M	ACACAACATATTT	.	39.0	33.0	35.0	0.0	.	.	.	Atlas-SNP
ZNRD1-AS1	80862	hgsc.bcm.edu	37	6	30000857	30000857	+	RNA	SNP	A	A	G	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	.	.	.	.	.	GAATCCAAACAGA	.	41.0	6.0	13.0	0.0	.	.	.	Atlas-SNP
