Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
OR1L8	138881	hgsc.bcm.edu	37	9	125330483	125330485	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	OR1L8	NM_001004454	exon1	c.273_275del	p.91_92del	.	.	56.0	10.0	68.0	0.0	.	90	.	Pindel,Atlas-Indel
ASPM	259266	hgsc.bcm.edu	37	1	197115320	197115320	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_001206846	exon1	c.C248A	p.P83Q	GCGGCCGGGAAGT	.	106.0	20.0	71.0	0.0	.	.	.	Atlas-SNP
RPL26	6154	hgsc.bcm.edu	37	17	8280958	8280958	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_000987	exon4	c.G362T	p.R121L	GCTTTCCGTTCGA	.	10.0	4.0	15.0	0.0	.	.	.	Atlas-SNP
CHMP2B	25978	hgsc.bcm.edu	37	3	87289878	87289878	+	Missense_Mutation	SNP	C	C	G	rs138886714	bycluster;byfrequency;alternate_allele	TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_014043	exon2	c.C64G	p.R22G	GAGTTACGAGGTA	.	252.0	52.0	281.0	0.0	.	.	.	Atlas-SNP
SLC23A1	9963	hgsc.bcm.edu	37	5	138713761	138713761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_152685	exon12	c.G1368A	p.M456I	GGAGTTCATGTCC	.	83.0	14.0	76.0	0.0	.	.	.	Atlas-SNP
KRT8	3856	hgsc.bcm.edu	37	12	53298675	53298675	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	KRT8,NS,carcinoma,0,5	KRT8	NM_001256282	exon2	c.T175G	p.S59A	TGCGGGAACCGGG	.	47.0	2.0	34.0	1.0	.	0	5	Atlas-SNP
NACAD	23148	hgsc.bcm.edu	37	7	45123210	45123210	+	Missense_Mutation	SNP	G	G	A	rs112661489	bycluster;byfrequency	TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	NACAD,extremity,malignant_melanoma,0,1	NACAD	NM_001146334	exon2	c.C2569T	p.P857S	GCTTTGGGGCTGA	.	14.0	6.0	7.0	0.0	0.069	0	1	Atlas-SNP
SEPT7P2	641977	hgsc.bcm.edu	37	7	45798636	45798636	+	RNA	SNP	A	A	G	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	.	.	.	.	ACCCCAAATACAC	.	45.0	5.0	40.0	0.0	.	.	.	Atlas-SNP
ST14	6768	hgsc.bcm.edu	37	11	130068300	130068300	+	Silent	SNP	C	C	T	rs367833176		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	ST14,caecum,carcinoma,0,1	ST14	NM_021978	exon13	c.C1557T	p.D519D	CAGCGACGAGCAG	.	116.0	7.0	115.0	0.0	.	0	1	Atlas-SNP
SLC6A6	6533	hgsc.bcm.edu	37	3	14508094	14508094	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	SLC6A6,NS,malignant_melanoma,0,2	SLC6A6	NM_003043	exon7	c.C803T	p.P268L	CGCTGCCGGGCGC	.	31.0	2.0	36.0	0.0	.	0	2	Atlas-SNP
ZNF75A	7627	hgsc.bcm.edu	37	16	3367499	3367499	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_153028	exon6	c.C521G	p.S174C	TTAGCTCTGACCT	.	195.0	37.0	146.0	0.0	.	.	.	Atlas-SNP
CNTNAP4	85445	hgsc.bcm.edu	37	16	76555039	76555039	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	CNTNAP4_ENST00000478060,NS,carcinoma,-1,2	CNTNAP4_ENST00000478060	NM_138994	exon15	c.T2149C	p.S717P	ACAGGATCATTTT	.	76.0	25.0	73.0	1.0	.	-1	2	Atlas-SNP
BSX	390259	hgsc.bcm.edu	37	11	122848423	122848423	+	Silent	SNP	G	G	C	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_001098169	exon3	c.C636G	p.T212T	TGGCTCGGTCAGC	.	30.0	8.0	39.0	0.0	.	.	.	Atlas-SNP
SEMA4D	10507	hgsc.bcm.edu	37	9	91994111	91994111	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_006378	exon18	c.C2097A	p.P699P	AGGCTTGGGAGGA	.	60.0	4.0	67.0	0.0	.	.	.	Atlas-SNP
GPBP1L1	60313	hgsc.bcm.edu	37	1	46124749	46124749	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_021639	exon4	c.A11C	p.H4P	AAATCATGCTGCG	.	85.0	8.0	46.0	0.0	.	.	.	Atlas-SNP
SUCLG2	8801	hgsc.bcm.edu	37	3	67578573	67578573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	SUCLG2_ENST00000493112,NS,carcinoma,0,3	SUCLG2_ENST00000493112	NM_001177599	exon4	c.G400A	p.G134S	TCACACCTTCTTT	.	72.0	7.0	75.0	0.0	.	0	3	Atlas-SNP
LPPR5	0	hgsc.bcm.edu	37	1	99470160	99470160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_001037317	exon1	c.C68T	p.T23M	ATCACCGTCCCTG	.	134.0	21.0	165.0	0.0	.	.	.	Atlas-SNP
ACAN	176	hgsc.bcm.edu	37	15	89399983	89399983	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	AGC1,NS,carcinoma,+2,4	AGC1	NM_001135	exon12	c.G4167T	p.E1389D	AGTAGAGGACATC	.	55.0	3.0	49.0	2.0	.	+2	4	Atlas-SNP
THRA	7067	hgsc.bcm.edu	37	17	38244622	38244622	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	THRA_ENST00000450525,NS,carcinoma,0,1	THRA_ENST00000450525	NM_001190918	exon8	c.G851A	p.R284Q	TCAAGCGGGAGCA	.	62.0	14.0	58.0	0.0	.	0	1	Atlas-SNP
SCN9A	6335	hgsc.bcm.edu	37	2	167085326	167085326	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_002977	exon22	c.G4048C	p.A1350P	GACTTGCAGGAAA	.	111.0	6.0	111.0	0.0	.	.	.	Atlas-SNP
GFM1	85476	hgsc.bcm.edu	37	3	158376767	158376767	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_024996	exon9	c.G1140T	p.K380N	AAAGAAGGGTGAC	.	70.0	5.0	58.0	0.0	.	.	.	Atlas-SNP
PARP12	64761	hgsc.bcm.edu	37	7	139756947	139756947	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_022750	exon3	c.C469T	p.Q157X	AATGTTGGCAAAT	.	40.0	11.0	44.0	0.0	.	.	.	Atlas-SNP
APBA1	320	hgsc.bcm.edu	37	9	72064657	72064657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_001163	exon10	c.G2024A	p.G675D	CCCCAGCCAGACT	.	88.0	4.0	75.0	0.0	.	.	.	Atlas-SNP
DIRC2	84925	hgsc.bcm.edu	37	3	122579034	122579034	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_032839	exon7	c.C1123A	p.L375I	ACACACCTACCTT	.	124.0	5.0	122.0	0.0	.	.	.	Atlas-SNP
CAPNS2	84290	hgsc.bcm.edu	37	16	55601279	55601279	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_032330	exon1	c.T611A	p.M204K	GAGATATGGATTT	.	131.0	19.0	119.0	0.0	.	.	.	Atlas-SNP
MYADML	151325	hgsc.bcm.edu	37	2	33952333	33952333	+	RNA	SNP	G	G	A	rs77831373	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	.	.	.	.	GAGGACGGACAGC	.	33.0	9.0	30.0	0.0	.	.	.	Atlas-SNP
GULP1	51454	hgsc.bcm.edu	37	2	189452633	189452633	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_016315	exon11	c.C800T	p.A267V	GAGCAGCAGATTT	.	289.0	48.0	317.0	0.0	.	.	.	Atlas-SNP
TRPS1	7227	hgsc.bcm.edu	37	8	116599271	116599271	+	Nonsense_Mutation	SNP	G	G	T	rs142472404	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_014112	exon5	c.C2657A	p.S886X	TCTCCCGATGCAG	.	67.0	9.0	59.0	0.0	.	.	.	Atlas-SNP
TAS2R46	259292	hgsc.bcm.edu	37	12	11214498	11214498	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_176887	exon1	c.A396G	p.I132M	CAATAGTATCACC	.	144.0	7.0	102.0	0.0	.	.	.	Atlas-SNP
MATN1	4146	hgsc.bcm.edu	37	1	31196429	31196429	+	RNA	SNP	G	G	A	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	.	.	.	.	CGGCACGGTTGTG	.	86.0	15.0	69.0	0.0	.	.	.	Atlas-SNP
