Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
JARID2	3720	hgsc.bcm.edu	37	6	15374463	15374463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_004973	exon2	c.G161A	p.G54E	TTGCTGGGAGCCT	.	102.0	27.0	91.0	0.0	.	.	.	Atlas-SNP
ODF3	113746	hgsc.bcm.edu	37	11	199447	199447	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	ODF3,face,carcinoma,0,1	ODF3	NM_053280	exon6	c.C613A	p.R205S	GCTGCCCGTGTGG	.	88.0	37.0	89.0	0.0	.	0	1	Atlas-SNP
ZHX1	11244	hgsc.bcm.edu	37	8	124267671	124267671	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_007222	exon3	c.T516C	p.S172S	CGAAGAAGAAACT	.	139.0	30.0	74.0	0.0	.	.	.	Atlas-SNP
C6orf165	154313	hgsc.bcm.edu	37	6	88119658	88119658	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_001031743	exon2	c.C101G	p.A34G	TGATTGCTTTTAT	.	23.0	10.0	53.0	0.0	.	.	.	Atlas-SNP
KRAS	3845	hgsc.bcm.edu	37	12	25380276	25380276	+	Missense_Mutation	SNP	T	T	C	rs121913240	bycluster	TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	KRAS_ENST00000256078,colon,carcinoma,+1,429	KRAS_ENST00000256078	NM_004985	exon3	c.A182G	p.Q61R	TCCTCTTGACCTG	.	193.0	14.0	87.0	0.0	.	+1	429	Atlas-SNP
KCNE4	23704	hgsc.bcm.edu	37	2	223918008	223918008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_080671	exon2	c.C613T	p.P205S	GAGACGCCCCTCA	.	129.0	34.0	92.0	0.0	.	.	.	Atlas-SNP
ND2	0	hgsc.bcm.edu	37	MT	4492	4492	+	Missense_Mutation	SNP	T	T	C	rs201172504	bycluster;alternate_allele	TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	ENST00000361453	exon1	c.T23C	p.V8A	AACCCGTCATCTA	.	18.0	9.0	15.0	0.0	.	.	.	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	37	7	100682117	100682117	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	MUC17,right_upper_lobe,carcinoma,-2,1	MUC17	NM_001040105	exon3	c.G7420A	p.G2474S	GAGGCTGGCACCC	.	104.0	6.0	82.0	0.0	.	-2	1	Atlas-SNP
ATL2	64225	hgsc.bcm.edu	37	2	38527452	38527452	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_001135673	exon10	c.C1090T	p.Q364X	CTCCTTGATAGAT	.	24.0	6.0	25.0	0.0	.	.	.	Atlas-SNP
VPS33A	65082	hgsc.bcm.edu	37	12	122734429	122734429	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_022916	exon6	c.G764A	p.G255D	TGAATGCCATAAA	.	80.0	28.0	75.0	0.0	.	.	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	37	1	228465295	228465295	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_001271223	exon29	c.G7969T	p.E2657X	CACGACGAAGTGC	.	76.0	23.0	72.0	0.0	.	.	.	Atlas-SNP
KRTAP9-1	728318	hgsc.bcm.edu	37	17	39346591	39346591	+	Silent	SNP	C	C	T	rs76923645		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	KRTAP9-1_ENST00000398470,caecum,carcinoma,0,2	KRTAP9-1_ENST00000398470	NM_001190460	exon1	c.C453T	p.P151P	CCAGCCCACCTGC	.	54.0	18.0	60.0	0.0	0.500	0	2	Atlas-SNP
TMEM182	130827	hgsc.bcm.edu	37	2	103380804	103380804	+	Silent	SNP	C	C	G	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_144632	exon3	c.C249G	p.S83S	ACCGTCCAAGAAC	.	88.0	30.0	100.0	0.0	.	.	.	Atlas-SNP
ILF3	3609	hgsc.bcm.edu	37	19	10798137	10798137	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_017620	exon18	c.G2187A	p.P729P	CTCACCGGTGCCC	.	114.0	14.0	117.0	0.0	.	.	.	Atlas-SNP
EBAG9	9166	hgsc.bcm.edu	37	8	110569202	110569202	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_004215	exon5	c.C360A	p.I120I	TGGCATCCCAGAT	.	158.0	37.0	100.0	0.0	.	.	.	Atlas-SNP
AVIL	10677	hgsc.bcm.edu	37	12	58204191	58204191	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_006576	exon6	c.G702C	p.K234N	TGTAGGCTTGATA	.	154.0	51.0	138.0	0.0	.	.	.	Atlas-SNP
ARMCX5	64860	hgsc.bcm.edu	37	X	101857554	101857554	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_022838	exon3	c.C485A	p.S162Y	TGAAATCCAGTGA	.	153.0	80.0	84.0	0.0	.	.	.	Atlas-SNP
ALDH4A1	8659	hgsc.bcm.edu	37	1	19209815	19209815	+	Missense_Mutation	SNP	G	G	T	rs199723895	by1000genomes;alternate_allele	TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_003748	exon6	c.C561A	p.S187R	GGGCACGCTGATG	.	54.0	4.0	68.0	0.0	.	.	.	Atlas-SNP
ACIN1	22985	hgsc.bcm.edu	37	14	23548787	23548787	+	Missense_Mutation	SNP	C	C	T	rs61741619	bycluster;byfrequency	TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_001164814	exon6	c.G1931A	p.R644H	CGAGAACGTGAAC	.	128.0	15.0	88.0	0.0	0.015	.	.	Atlas-SNP
FAM46A	55603	hgsc.bcm.edu	37	6	82461742	82461742	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_017633	exon2	c.C117T	p.G39G	GTCGCCGCCGCCG	.	43.0	5.0	26.0	0.0	.	.	.	Atlas-SNP
KRTAP9-1	728318	hgsc.bcm.edu	37	17	39346622	39346622	+	Missense_Mutation	SNP	T	T	A	rs79470847	bycluster	TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	KRTAP9-1_ENST00000398470,caecum,carcinoma,0,2	KRTAP9-1_ENST00000398470	NM_001190460	exon1	c.T484A	p.C162S	CAGCCTTGCTGCC	.	54.0	18.0	48.0	0.0	0.500	0	2	Atlas-SNP
ACSM2B	348158	hgsc.bcm.edu	37	16	20556521	20556521	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_182617	exon11	c.G1239T	p.R413S	TTTGACCCTGATG	.	63.0	20.0	94.0	0.0	.	.	.	Atlas-SNP
