Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
AZU1	566	hgsc.bcm.edu	37	19	831856	831857	+	In_Frame_Ins	INS	-	-	CCGGGA	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	AZU1	NM_001700	exon5	c.735_736insCCGGGA	p.N245delinsNPG	.	.	129.0	26.0	155.0	0.0	.	31	.	Pindel,Atlas-Indel
USP13	8975	hgsc.bcm.edu	37	3	179472611	179472611	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	USP13	NM_003940	exon15	c.1889delG	p.S630fs	.	.	109.0	22.0	110.0	0.0	.	117	.	Pindel,Atlas-Indel
SRCAP	10847	hgsc.bcm.edu	37	16	30735366	30735367	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	SRCAP	NM_006662	exon25	c.4621_4622insT	p.V1541fs	.	.	142.0	27.0	119.0	0.0	.	298	.	Pindel,Atlas-Indel
ANKHD1	54882	hgsc.bcm.edu	37	5	139820640	139820640	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_024668	exon5	c.C826G	p.L276V	ACTCCCCTGATGG	.	64.0	7.0	106.0	0.0	.	.	.	Atlas-SNP
ADAMTSL4	54507	hgsc.bcm.edu	37	1	150526211	150526211	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_019032	exon6	c.C744A	p.P248P	TGCCCCCCTACGG	.	79.0	35.0	74.0	0.0	.	.	.	Atlas-SNP
DBX1	120237	hgsc.bcm.edu	37	11	20180817	20180817	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_001029865	exon2	c.A389G	p.Q130R	ACGCTCTGGAGCA	.	76.0	10.0	94.0	0.0	.	.	.	Atlas-SNP
G6PD	2539	hgsc.bcm.edu	37	X	153764200	153764200	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_000402	exon4	c.C309A	p.S103S	GAGGCGGGAACGG	.	90.0	5.0	123.0	0.0	.	.	.	Atlas-SNP
CCR3	1232	hgsc.bcm.edu	37	3	46307688	46307688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	CCR3,NS,carcinoma,-2,1	CCR3	NM_178328	exon3	c.G1102A	p.A368T	TCCACAGCAGAGC	.	64.0	3.0	68.0	0.0	.	-2	1	Atlas-SNP
STRADB	55437	hgsc.bcm.edu	37	2	202344880	202344880	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_018571	exon12	c.C1239T	p.D413D	AAAAGACTCATAC	.	120.0	8.0	130.0	0.0	.	.	.	Atlas-SNP
FAM169B	283777	hgsc.bcm.edu	37	15	98982942	98982942	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_182562	exon7	c.A497T	p.D166V	GGATCATCCTTTG	.	143.0	43.0	191.0	0.0	.	.	.	Atlas-SNP
FSD2	123722	hgsc.bcm.edu	37	15	83455275	83455275	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_001007122	exon3	c.C723A	p.F241L	AGTGATGAAAACC	.	96.0	5.0	120.0	0.0	.	.	.	Atlas-SNP
FUCA1	2517	hgsc.bcm.edu	37	1	24194762	24194762	+	Silent	SNP	C	C	G	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_000147	exon1	c.G15C	p.G5G	CCTCATCCCCGGA	.	42.0	8.0	33.0	0.0	.	.	.	Atlas-SNP
TNXB	7148	hgsc.bcm.edu	37	6	32037571	32037571	+	Silent	SNP	C	C	T	rs376818111		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_019105	exon15	c.G5346A	p.L1782L	CACCTGCAGCTCC	.	74.0	24.0	110.0	0.0	.	.	.	Atlas-SNP
AGR3	155465	hgsc.bcm.edu	37	7	16918209	16918209	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	AGR3,NS,carcinoma,+1,1	AGR3	NM_176813	exon2	c.T34C	p.L12L	CGAGTAAGAGGCA	.	74.0	32.0	87.0	0.0	.	+1	1	Atlas-SNP
GPR37	2861	hgsc.bcm.edu	37	7	124386667	124386667	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	GPR37,NS,carcinoma,+1,2	GPR37	NM_005302	exon2	c.A1754G	p.N585S	TACTCGTTGTCAT	.	63.0	29.0	81.0	0.0	.	+1	2	Atlas-SNP
PAF1	54623	hgsc.bcm.edu	37	19	39880019	39880019	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_019088	exon6	c.C364T	p.Q122X	GCTGCTGGGATCT	.	80.0	30.0	127.0	0.0	.	.	.	Atlas-SNP
C16orf78	123970	hgsc.bcm.edu	37	16	49430428	49430428	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_144602	exon4	c.G489C	p.E163D	ACAGGAGGGTACC	.	191.0	45.0	136.0	0.0	.	.	.	Atlas-SNP
GJB5	2709	hgsc.bcm.edu	37	1	35223423	35223423	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_005268	exon2	c.C492T	p.C164C	CAAGTGCCACGCA	.	88.0	4.0	79.0	0.0	.	.	.	Atlas-SNP
RPLP0P2	113157	hgsc.bcm.edu	37	11	61405030	61405030	+	RNA	SNP	T	T	A	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	.	.	.	.	TGCTGCTGCAGCC	.	104.0	5.0	113.0	0.0	.	.	.	Atlas-SNP
ROBO3	64221	hgsc.bcm.edu	37	11	124740969	124740969	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_022370	exon7	c.G1093A	p.A365T	AGCGTGGCTTTCC	.	86.0	35.0	85.0	0.0	.	.	.	Atlas-SNP
DBX1	120237	hgsc.bcm.edu	37	11	20180818	20180818	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_001029865	exon2	c.C388A	p.Q130K	CGCTCTGGAGCAA	.	77.0	10.0	94.0	0.0	.	.	.	Atlas-SNP
