Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
PBRM1	55193	hgsc.bcm.edu	37	3	52668670	52668671	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	PBRM1	NM_018313	exon12	c.1249_1250insA	p.Y417fs	.	.	141.0	26.0	130.0	0.0	.	1252	.	Pindel,Atlas-Indel
MORN1	79906	hgsc.bcm.edu	37	1	2252853	2252853	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_024848	exon14	c.G1463A	p.S488N	GTGCAGCTGTGGG	.	37.0	15.0	63.0	0.0	.	.	.	Atlas-SNP
FAM120C	54954	hgsc.bcm.edu	37	X	54209318	54209318	+	Missense_Mutation	SNP	A	A	G	rs199506922		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_017848	exon1	c.T314C	p.L105P	GGCGGCAGCGGAG	.	17.0	9.0	11.0	0.0	.	.	.	Atlas-SNP
SETX	23064	hgsc.bcm.edu	37	9	135140214	135140214	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_015046	exon26	c.G7446C	p.E2482D	GGACCCCTCTGGG	.	88.0	22.0	70.0	0.0	.	.	.	Atlas-SNP
CEL	1056	hgsc.bcm.edu	37	9	135940444	135940444	+	Missense_Mutation	SNP	G	G	A	rs201336247	bycluster	TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	CEL,NS,carcinoma,0,1	CEL	NM_001807	exon4	c.G367A	p.V123I	CTGCCCGTTATGA	.	62.0	18.0	51.0	0.0	.	0	1	Atlas-SNP
CELF3	11189	hgsc.bcm.edu	37	1	151678722	151678722	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	CELF3,caecum,carcinoma,0,1	CELF3	NM_007185	exon10	c.A1104G	p.Q368Q	CTGCTGTTGCTGC	.	35.0	3.0	40.0	1.0	.	0	1	Atlas-SNP
BEND7	222389	hgsc.bcm.edu	37	10	13541880	13541880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_001100912	exon2	c.G190A	p.V64M	TCCACACACCACG	.	135.0	40.0	149.0	0.0	.	.	.	Atlas-SNP
CDC27	996	hgsc.bcm.edu	37	17	45234300	45234300	+	Missense_Mutation	SNP	G	G	T	rs199588670		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	CDC27_ENST00000531206,NS,carcinoma,0,10	CDC27_ENST00000531206	NM_001114091	exon7	c.C821A	p.A274D	CTAAGAGCTGCTG	.	55.0	4.0	40.0	1.0	.	0	10	Atlas-SNP
C11orf65	160140	hgsc.bcm.edu	37	11	108256666	108256666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_152587	exon8	c.C768A	p.N256K	CGAAGAGTTGCTT	.	95.0	4.0	126.0	0.0	.	.	.	Atlas-SNP
ZNF729	100287226	hgsc.bcm.edu	37	19	22499502	22499502	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_001242680	exon4	c.A3283T	p.K1095X	AAACATAAGGTAA	.	37.0	15.0	43.0	0.0	.	.	.	Atlas-SNP
FMNL2	114793	hgsc.bcm.edu	37	2	153476069	153476069	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	FMNL2,rectum,carcinoma,0,2	FMNL2	NM_052905	exon15	c.C1674A	p.P558P	GCCGCCCCCTCCT	.	71.0	19.0	60.0	0.0	.	0	2	Atlas-SNP
SNRPB	6628	hgsc.bcm.edu	37	20	2442426	2442426	+	Silent	SNP	C	C	T	rs371293377		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	SNRPB,right_upper_lobe,carcinoma,-1,1	SNRPB	NM_198216	exon7	c.G699A	p.P233P	CATTCCCGGGGGA	.	91.0	4.0	82.0	0.0	.	-1	1	Atlas-SNP
VARS2	57176	hgsc.bcm.edu	37	6	30893760	30893760	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_001167734	exon29	c.A3155G	p.E1052G	AAGGGGAGGCAGG	.	152.0	7.0	135.0	0.0	.	.	.	Atlas-SNP
LMAN1L	79748	hgsc.bcm.edu	37	15	75111137	75111137	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_021819	exon5	c.C576T	p.T192T	GATCACCTACTGG	.	109.0	22.0	75.0	0.0	.	.	.	Atlas-SNP
KIF1A	547	hgsc.bcm.edu	37	2	241696843	241696843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_001244008	exon27	c.G2751T	p.E917D	CTCATCCTCCTCC	.	56.0	9.0	34.0	0.0	.	.	.	Atlas-SNP
TRIM13	10206	hgsc.bcm.edu	37	13	50588549	50588549	+	RNA	SNP	A	A	G	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	.	.	.	.	ATGTATATATAGA	.	43.0	6.0	33.0	0.0	.	.	.	Atlas-SNP
BRD7	29117	hgsc.bcm.edu	37	16	50368679	50368679	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_013263	exon7	c.A830G	p.E277G	GAGTCCTCTCTCT	.	134.0	6.0	94.0	0.0	.	.	.	Atlas-SNP
COX2	5743	hgsc.bcm.edu	37	MT	7981	7981	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	ENST00000361739	exon1	c.C396T	p.D132D	AGGCGACCTGCGA	.	16.0	6.0	7.0	0.0	.	.	.	Atlas-SNP
COX1	5742	hgsc.bcm.edu	37	MT	7329	7329	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	ENST00000361624	exon1	c.T1426C	p.F476L	GAAGCCTTCGCTT	.	25.0	19.0	16.0	0.0	.	.	.	Atlas-SNP
CACNA1A	773	hgsc.bcm.edu	37	19	13423558	13423558	+	Silent	SNP	G	G	T	rs372090886	alternate_allele	TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_001127221	exon12	c.C1596A	p.S532S	CATTTCGGACATA	.	30.0	11.0	58.0	0.0	.	.	.	Atlas-SNP
KRTAP2-4	85294	hgsc.bcm.edu	37	17	39221816	39221816	+	Nonsense_Mutation	SNP	C	C	T	rs200049107		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	KRTAP2-4,trunk,malignant_melanoma,0,1	KRTAP2-4	NM_033184	exon1	c.G282A	p.W94X	GGTGGCCCAGCAG	.	17.0	8.0	9.0	1.0	.	0	1	Atlas-SNP
HECTD4	283450	hgsc.bcm.edu	37	12	112622476	112622476	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_001109662	exon61	c.A9892G	p.I3298V	TGTAGATCTCGTC	.	81.0	16.0	76.0	0.0	.	.	.	Atlas-SNP
CXXC1	30827	hgsc.bcm.edu	37	18	47810855	47810855	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_001101654	exon9	c.C1110A	p.A370A	GTCCTTGGCATCA	.	59.0	5.0	41.0	0.0	.	.	.	Atlas-SNP
AR	367	hgsc.bcm.edu	37	X	66765222	66765222	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_000044	exon1	c.G234A	p.Q78Q	GCAGCAGCAGCAA	.	171.0	11.0	85.0	0.0	.	.	.	Atlas-SNP
CSF1	1435	hgsc.bcm.edu	37	1	110459933	110459933	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_172210	exon4	c.C244T	p.L82F	TGCTACCTTAAGA	.	77.0	25.0	88.0	0.0	.	.	.	Atlas-SNP
MLLT10P1	140678	hgsc.bcm.edu	37	20	29637851	29637851	+	RNA	SNP	C	C	G	rs148007340		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	.	.	.	.	GGATTTCTTTCAA	.	14.0	5.0	16.0	0.0	.	.	.	Atlas-SNP
TAS2R19	259294	hgsc.bcm.edu	37	12	11174302	11174302	+	Missense_Mutation	SNP	A	A	G	rs72475480	bycluster;byfrequency;by1000genomes	TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_176888	exon1	c.T869C	p.F290S	GAAAGAAAGGTCT	.	215.0	18.0	81.0	0.0	0.500	.	.	Atlas-SNP
