Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
BAP1	8314	hgsc.bcm.edu	37	3	52443757	52443757	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	BAP1	NM_004656	exon2	c.41delT	p.L14fs	.	.	50.0	14.0	43.0	0.0	.	371	.	Pindel,Atlas-Indel
KRTAP9-1	728318	hgsc.bcm.edu	37	17	39346616	39346617	+	In_Frame_Ins	INS	-	-	AGCCTAGCTGTGGGTCCAGCTGCTGCC	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.,2	KRTAP9-1	NM_001190460	exon1	c.478_479insAGCCTAGCTGTGGGTCCAGCTGCTGCC	p.Q160delinsQPSCGSSCCQ	.	.	66.0	14.0	50.0	0.0	.	34	.	Pindel
ADARB2-AS1	642394	hgsc.bcm.edu	37	10	1578004	1578004	+	RNA	SNP	T	T	C	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	.	.	.	.	CTGAGTTCCCTTG	.	69.0	6.0	123.0	0.0	.	.	.	Atlas-SNP
ITGB8	3696	hgsc.bcm.edu	37	7	20449503	20449503	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_002214	exon14	c.G2193C	p.K731N	GGATAAGTTGATT	.	216.0	43.0	182.0	0.0	.	.	.	Atlas-SNP
COG8	84342	hgsc.bcm.edu	37	16	69368744	69368744	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_032382	exon3	c.G1093T	p.G365C	ACTGACCCCGGAA	.	76.0	16.0	77.0	0.0	.	.	.	Atlas-SNP
ZNF30	90075	hgsc.bcm.edu	37	19	35434283	35434283	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_001099438	exon5	c.A416G	p.H139R	TTCAACATGAAAG	.	136.0	38.0	157.0	0.0	.	.	.	Atlas-SNP
PANK4	55229	hgsc.bcm.edu	37	1	2453203	2453203	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_018216	exon2	c.T161C	p.V54A	TGCTGTACCGTTG	.	69.0	4.0	66.0	0.0	.	.	.	Atlas-SNP
CDC27	996	hgsc.bcm.edu	37	17	45216115	45216115	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	CDC27_ENST00000531206,NS,carcinoma,0,2	CDC27_ENST00000531206	NM_001114091	exon13	c.A1712T	p.N571I	GGCGAATTTTTAT	.	33.0	3.0	60.0	0.0	.	0	2	Atlas-SNP
PTMA	5757	hgsc.bcm.edu	37	2	232577559	232577559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	PTMA,NS,carcinoma,0,2	PTMA	NM_001099285	exon5	c.T334C	p.X112Q	GATGACTAGACAG	.	49.0	5.0	36.0	0.0	.	0	2	Atlas-SNP
BPTF	2186	hgsc.bcm.edu	37	17	65890193	65890193	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	BPTF_ENST00000335221,caecum,carcinoma,0,4	BPTF_ENST00000335221	NM_004459	exon9	c.G2833T	p.E945X	CCCAGAGAATTTG	.	82.0	23.0	59.0	0.0	.	0	4	Atlas-SNP
DLG2	1740	hgsc.bcm.edu	37	11	83180284	83180284	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_001142699	exon25	c.A2579G	p.Y860C	GTTCCATATAAAT	.	134.0	48.0	173.0	0.0	.	.	.	Atlas-SNP
DCTN1	1639	hgsc.bcm.edu	37	2	74592776	74592776	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_004082	exon25	c.G2895C	p.E965D	ACTTAGCTCCTCT	.	90.0	19.0	79.0	0.0	.	.	.	Atlas-SNP
TCERG1L	256536	hgsc.bcm.edu	37	10	133106529	133106529	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	TCERG1L,colon,carcinoma,-2,4	TCERG1L	NM_174937	exon3	c.G615A	p.P205P	AGGAGCCGGCCTG	.	112.0	48.0	171.0	0.0	.	-2	4	Atlas-SNP
FLT3LG	2323	hgsc.bcm.edu	37	19	49979435	49979435	+	Missense_Mutation	SNP	G	G	C	rs367551792	alternate_allele	TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_001204503	exon3	c.G178C	p.V60L	GTCACCGTGGCCT	.	49.0	13.0	45.0	0.0	.	.	.	Atlas-SNP
ADARB2-AS1	642394	hgsc.bcm.edu	37	10	1578005	1578005	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	.	.	.	.	TGAGTTCCCTTGC	.	69.0	6.0	124.0	0.0	.	.	.	Atlas-SNP
ZBTB49	166793	hgsc.bcm.edu	37	4	4304033	4304033	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_145291	exon3	c.T470C	p.L157P	ATTTACTGCAGGA	.	137.0	11.0	169.0	0.0	.	.	.	Atlas-SNP
CCT6A	908	hgsc.bcm.edu	37	7	56119654	56119654	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_001762	exon1	c.T113A	p.L38Q	CCAACCTGGGGCC	.	127.0	32.0	62.0	0.0	.	.	.	Atlas-SNP
FAM71E2	284418	hgsc.bcm.edu	37	19	55870578	55870578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_001145402	exon9	c.C1658T	p.P553L	GCAGGCGGGCTCA	.	61.0	18.0	97.0	0.0	.	.	.	Atlas-SNP
TCHHL1	126637	hgsc.bcm.edu	37	1	152057679	152057679	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_001008536	exon3	c.G2479C	p.A827P	CCTGGGCTATCTG	.	182.0	9.0	209.0	0.0	.	.	.	Atlas-SNP
ZNF823	55552	hgsc.bcm.edu	37	19	11833770	11833770	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	ZNF823_ENST00000341191,colon,carcinoma,-1,2	ZNF823_ENST00000341191	NM_001080493	exon4	c.A579G	p.K193K	CTTACATTTATAA	.	106.0	33.0	108.0	0.0	.	-1	2	Atlas-SNP
HIST1H4B	8366	hgsc.bcm.edu	37	6	26027303	26027303	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_003544	exon1	c.A178G	p.K60E	ACACCTTGAGAAC	.	112.0	39.0	128.0	0.0	.	.	.	Atlas-SNP
SON	6651	hgsc.bcm.edu	37	21	34927489	34927489	+	Silent	SNP	G	G	C	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	SON_ENST00000300278,NS,carcinoma,0,2	SON_ENST00000300278	NM_032195	exon3	c.G5952C	p.R1984R	CCGCCGGAGCCGC	.	13.0	3.0	16.0	0.0	.	0	2	Atlas-SNP
PCDHGA9	56107	hgsc.bcm.edu	37	5	140784930	140784930	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_032089	exon1	c.C2411A	p.T804N	AAGACACCCCTTT	.	83.0	27.0	111.0	0.0	.	.	.	Atlas-SNP
SPEN	23013	hgsc.bcm.edu	37	1	16254718	16254718	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_015001	exon11	c.G1983A	p.W661X	AGAATGGGAAACT	.	126.0	36.0	140.0	0.0	.	.	.	Atlas-SNP
MGC72080	0	hgsc.bcm.edu	37	7	97599705	97599705	+	RNA	SNP	T	T	G	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	.	.	.	.	TTTTTTTTTGGAG	.	250.0	14.0	168.0	0.0	.	.	.	Atlas-SNP
SUGP2	10147	hgsc.bcm.edu	37	19	19135472	19135472	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	SUGP2,NS,carcinoma,0,1	SUGP2	NM_014884	exon3	c.C1685A	p.T562K	GGTTTCGTAGGAG	.	46.0	2.0	74.0	0.0	.	0	1	Atlas-SNP
PARD6G-AS1	100130522	hgsc.bcm.edu	37	18	77920329	77920329	+	RNA	SNP	G	G	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	.	.	.	.	CTGGGTGTGCATG	.	79.0	5.0	85.0	0.0	.	.	.	Atlas-SNP
GSR	2936	hgsc.bcm.edu	37	8	30560672	30560672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_001195103	exon5	c.C578T	p.A193V	TGTGGGGCGGTGT	.	128.0	37.0	134.0	0.0	.	.	.	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	37	19	39057585	39057585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	RYR1,caecum,carcinoma,+1,1	RYR1	NM_000540	exon92	c.C13472T	p.P4491L	CAGAGCCAGAGCC	.	42.0	12.0	35.0	0.0	.	+1	1	Atlas-SNP
