Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
PANX2	56666	hgsc.bcm.edu	37	22	50617594	50617595	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	PANX2	NM_052839	exon3	c.1922_1923insC	p.G641fs	.	.	84.0	13.0	87.0	0.0	.	69	.	Atlas-Indel
HIST1H4G	8369	hgsc.bcm.edu	37	6	26246971	26246971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_003547	exon1	c.C235T	p.R79C	TCTTGCGCTTGGC	.	92.0	5.0	137.0	0.0	.	.	.	Atlas-SNP
BEST2	54831	hgsc.bcm.edu	37	19	12864150	12864150	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_017682	exon2	c.C229A	p.P77T	CTCATCCCTGTCT	.	92.0	14.0	114.0	0.0	.	.	.	Atlas-SNP
ATG4B	23192	hgsc.bcm.edu	37	2	242610198	242610198	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_013325	exon11	c.1014+1G>T	.	AAAAAGGTTTGTA	.	72.0	14.0	61.0	0.0	.	.	.	Atlas-SNP
CASC5	57082	hgsc.bcm.edu	37	15	40933157	40933157	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_170589	exon15	c.A5808G	p.Q1936Q	AAGTCAATATGTT	.	53.0	13.0	61.0	0.0	.	.	.	Atlas-SNP
ABCA2	20	hgsc.bcm.edu	37	9	139906169	139906169	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_212533	exon36	c.C5658T	p.V1886V	GATGATGACACAG	.	63.0	8.0	69.0	0.0	.	.	.	Atlas-SNP
CAPN7	23473	hgsc.bcm.edu	37	3	15282061	15282061	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_014296	exon13	c.T1489C	p.W497R	AAAAACTGGACTC	.	69.0	12.0	81.0	0.0	.	.	.	Atlas-SNP
CYTH3	9265	hgsc.bcm.edu	37	7	6204910	6204910	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_004227	exon12	c.C1121G	p.S374C	TTGATGGATTTCA	.	204.0	24.0	197.0	0.0	.	.	.	Atlas-SNP
KRT1	3848	hgsc.bcm.edu	37	12	53069243	53069243	+	Missense_Mutation	SNP	T	T	C	rs77846840	bycluster	TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_006121	exon9	c.A1669G	p.S557G	AGCTGCTACCTCC	.	29.0	11.0	24.0	0.0	0.500	.	.	Atlas-SNP
CCDC136	64753	hgsc.bcm.edu	37	7	128441311	128441311	+	Nonsense_Mutation	SNP	G	G	T	rs200870724	by1000genomes;alternate_allele	TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	NAG6,NS,carcinoma,0,3	NAG6	NM_001201372	exon5	c.G568T	p.E190X	GAAATAGAACAGG	.	75.0	3.0	45.0	0.0	.	0	3	Atlas-SNP
FERD3L	222894	hgsc.bcm.edu	37	7	19184768	19184768	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	FERD3L,NS,carcinoma,+1,1	FERD3L	NM_152898	exon1	c.A218G	p.D73G	TCTCCGTCCCCCT	.	74.0	3.0	77.0	0.0	.	+1	1	Atlas-SNP
TMX2-CTNND1	100528016	hgsc.bcm.edu	37	11	57509552	57509552	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	.	.	.	.	GGGTTCCGAAGTA	.	81.0	20.0	81.0	0.0	.	.	.	Atlas-SNP
LRP4	4038	hgsc.bcm.edu	37	11	46898070	46898070	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_002334	exon25	c.G3483A	p.L1161L	CCACACCAACACT	.	69.0	14.0	101.0	0.0	.	.	.	Atlas-SNP
SLC35F3	148641	hgsc.bcm.edu	37	1	234040876	234040876	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_173508	exon1	c.T53C	p.V18A	TTGCCGTGTGAGT	.	35.0	8.0	40.0	0.0	.	.	.	Atlas-SNP
MIR548N	100302152	hgsc.bcm.edu	37	2	179415021	179415021	+	RNA	SNP	C	C	G	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	.	.	.	.	GAAATACTATGTA	.	40.0	16.0	40.0	0.0	.	.	.	Atlas-SNP
ZP2	7783	hgsc.bcm.edu	37	16	21209141	21209141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_003460	exon18	c.G2041A	p.G681R	TGCTCCCACTTGC	.	239.0	36.0	245.0	0.0	.	.	.	Atlas-SNP
