Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
KDM2A	22992	hgsc.bcm.edu	37	11	66948868	66948871	+	In_Frame_Del	DEL	AAGT	AAGT	-	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	AAGT	AAGT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_012308	exon4	c.258_260del	p.86_87del	.	.	94.0	16.0	84.0	0.0	.	.	.	Pindel,Atlas-Indel
PIM2	11040	hgsc.bcm.edu	37	X	48772441	48772441	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_006875	exon4	c.A451C	p.I151L	GCTGGATGGCTGC	.	173.0	62.0	128.0	0.0	.	.	.	Atlas-SNP
MUC21	394263	hgsc.bcm.edu	37	6	30954618	30954618	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	MUC21,rectum,carcinoma,0,2	MUC21	NM_001010909	exon2	c.T666C	p.A222A	TGGGGCTGGCACA	.	50.0	2.0	43.0	0.0	.	0	2	Atlas-SNP
GNS	2799	hgsc.bcm.edu	37	12	65141505	65141505	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_002076	exon3	c.A446G	p.K149R	AAATATTTCCCTG	.	241.0	51.0	114.0	0.0	.	.	.	Atlas-SNP
BTN2A3P	54718	hgsc.bcm.edu	37	6	26422353	26422353	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	BTN2A3,NS,carcinoma,0,9	BTN2A3	.	.	.	.	ATGGAACCAGCTG	.	103.0	6.0	93.0	1.0	.	0	9	Atlas-SNP
PTPN23	25930	hgsc.bcm.edu	37	3	47450550	47450550	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_015466	exon16	c.G1615C	p.A539P	CGGGCTGCCCTGC	.	45.0	15.0	59.0	0.0	.	.	.	Atlas-SNP
EPC2	26122	hgsc.bcm.edu	37	2	149501290	149501290	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_015630	exon3	c.A413T	p.Q138L	CTTTGCAATTTGA	.	245.0	49.0	249.0	0.0	.	.	.	Atlas-SNP
RDH13	112724	hgsc.bcm.edu	37	19	55559896	55559896	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	RDH13_ENST00000415061,colon,carcinoma,-1,2	RDH13_ENST00000415061	NM_001145971	exon5	c.G459C	p.L153F	GTTTGTCAAGAGA	.	92.0	21.0	69.0	0.0	.	-1	2	Atlas-SNP
ISPD	729920	hgsc.bcm.edu	37	7	16415788	16415788	+	Missense_Mutation	SNP	G	G	T	rs376411072	alternate_allele	TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	ISPD_ENST00000407010,NS,carcinoma,0,2	ISPD_ENST00000407010	NM_001101426	exon3	c.C613A	p.R205S	TGGCACGTTCTAG	.	113.0	5.0	83.0	0.0	.	0	2	Atlas-SNP
ZNF490	57474	hgsc.bcm.edu	37	19	12692507	12692507	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	ZNF490,NS,carcinoma,+2,1	ZNF490	NM_020714	exon5	c.A382G	p.K128E	CTTCTTTATTTTC	.	108.0	17.0	70.0	0.0	.	+2	1	Atlas-SNP
CARD10	29775	hgsc.bcm.edu	37	22	37891566	37891566	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_014550	exon15	c.G2331A	p.E777E	GCATTTCTCCTGA	.	62.0	17.0	59.0	0.0	.	.	.	Atlas-SNP
MST1	4485	hgsc.bcm.edu	37	3	49723603	49723603	+	Missense_Mutation	SNP	G	G	A	rs199969873	bycluster;by1000genomes	TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	MST1,NS,carcinoma,0,5	MST1	NM_020998	exon9	c.C1039T	p.R347W	GGTTCCGGCAGAA	.	37.0	6.0	51.0	2.0	0.005	0	5	Atlas-SNP
KIT	3815	hgsc.bcm.edu	37	4	55599321	55599321	+	Missense_Mutation	SNP	A	A	T	rs121913507	bycluster	TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	KIT,colon,carcinoma,+1,932	KIT	NM_000222	exon17	c.A2447T	p.D816V	CCAGAGACATCAA	.	65.0	10.0	93.0	0.0	.	+1	932	Atlas-SNP
PCDHB7	56129	hgsc.bcm.edu	37	5	140553994	140553994	+	Silent	SNP	G	G	T	rs374392843		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	PCDHB7,NS,carcinoma,0,4	PCDHB7	NM_018940	exon1	c.G1578T	p.A526A	GCAGGCGTTCGAG	.	71.0	3.0	52.0	1.0	.	0	4	Atlas-SNP
UBFD1	56061	hgsc.bcm.edu	37	16	23569548	23569548	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	UBFD1,colon,carcinoma,+2,1	UBFD1	NM_019116	exon2	c.C303T	p.F101F	GAAGTTCCCCCTG	.	70.0	9.0	83.0	0.0	.	+2	1	Atlas-SNP
LETMD1	25875	hgsc.bcm.edu	37	12	51445948	51445948	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_001243689	exon3	c.G348C	p.K116N	TATAAAGTTTCAT	.	75.0	9.0	63.0	0.0	.	.	.	Atlas-SNP
GANAB	23193	hgsc.bcm.edu	37	11	62400201	62400201	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	GANAB,NS,carcinoma,+1,1	GANAB	NM_198335	exon10	c.C898A	p.R300S	AGAGGCGATATGG	.	56.0	3.0	59.0	0.0	.	+1	1	Atlas-SNP
SPHKAP	80309	hgsc.bcm.edu	37	2	228882457	228882457	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_030623	exon7	c.T3113C	p.F1038S	TTGGCAAAAAGAT	.	122.0	38.0	109.0	0.0	.	.	.	Atlas-SNP
CCDC144B	284047	hgsc.bcm.edu	37	17	18446965	18446965	+	RNA	SNP	T	T	A	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	.	.	.	.	ATTTAATTCATAA	.	180.0	46.0	214.0	0.0	.	.	.	Atlas-SNP
DDX6	1656	hgsc.bcm.edu	37	11	118627002	118627002	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_004397	exon11	c.C1141A	p.R381R	CATTTCGGAAATC	.	42.0	12.0	39.0	0.0	.	.	.	Atlas-SNP
KRAS	3845	hgsc.bcm.edu	37	12	25380271	25380271	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	KRAS_ENST00000256078,caecum,carcinoma,0,6	KRAS_ENST00000256078	NM_004985	exon3	c.G187A	p.E63K	TGTACTCCTCTTG	.	218.0	42.0	97.0	1.0	.	0	6	Atlas-SNP
IPO5	3843	hgsc.bcm.edu	37	13	98658520	98658520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	IPO5,NS,carcinoma,0,1	IPO5	NM_002271	exon17	c.C1688T	p.A563V	AGAATGCGGTTCA	.	94.0	4.0	98.0	0.0	.	0	1	Atlas-SNP
AMHR2	269	hgsc.bcm.edu	37	12	53825148	53825148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_020547	exon11	c.C1613T	p.A538V	TTCCTGCCCCTAC	.	206.0	41.0	144.0	0.0	.	.	.	Atlas-SNP
ULK1	8408	hgsc.bcm.edu	37	12	132404132	132404132	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	ULK1,NS,carcinoma,0,1	ULK1	NM_003565	exon25	c.C2800A	p.Q934K	GTGAAGCAGGGTG	.	57.0	10.0	51.0	0.0	.	0	1	Atlas-SNP
FPGT-TNNI3K	100526835	hgsc.bcm.edu	37	1	74835124	74835124	+	Silent	SNP	C	C	A	rs41289190	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	TNNI3K,NS,carcinoma,0,2	TNNI3K	NM_001199327	exon18	c.C1825A	p.R609R	TTTTGCCGAGAGG	.	153.0	26.0	152.0	0.0	.	0	2	Atlas-SNP
ATF2	1386	hgsc.bcm.edu	37	2	175979435	175979435	+	Silent	SNP	G	G	C	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_001880	exon8	c.C609G	p.S203S	GTTAGAGGATGGT	.	127.0	6.0	162.0	0.0	.	.	.	Atlas-SNP
DNAJC18	202052	hgsc.bcm.edu	37	5	138755762	138755762	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_152686	exon7	c.G932A	p.C311Y	TTCCAACAACTAG	.	176.0	34.0	151.0	0.0	.	.	.	Atlas-SNP
CLPTM1L	81037	hgsc.bcm.edu	37	5	1341803	1341803	+	Missense_Mutation	SNP	C	C	T	rs200467747	bycluster	TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_030782	exon3	c.G436A	p.G146R	ACTCCCCGGTGAG	.	77.0	4.0	101.0	0.0	.	.	.	Atlas-SNP
IFT172	26160	hgsc.bcm.edu	37	2	27677283	27677283	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_015662	exon32	c.T3468C	p.G1156G	GAATTTACCCTAC	.	102.0	33.0	90.0	0.0	.	.	.	Atlas-SNP
