Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
MSH3	4437	hgsc.bcm.edu	37	5	79950745	79950745	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	MSH3,NS,carcinoma,0,1	MSH3	NM_002439	exon1	c.C199G	p.P67A	GCGCCCCCAGCTC	.	16.0	5.0	24.0	0.0	.	0	1	Atlas-SNP
TUBA1C	84790	hgsc.bcm.edu	37	12	49663613	49663613	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_032704	exon3	c.G229A	p.E77K	CCAGATGAAGTTC	.	135.0	21.0	109.0	0.0	.	.	.	Atlas-SNP
ZSCAN10	84891	hgsc.bcm.edu	37	16	3142732	3142732	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	ZSCAN10,NS,carcinoma,-1,1	ZSCAN10	NM_032805	exon1	c.C42A	p.C14X	GTGGCCGCAGAGC	.	72.0	4.0	78.0	1.0	.	-1	1	Atlas-SNP
SLC13A4	26266	hgsc.bcm.edu	37	7	135406263	135406263	+	Silent	SNP	C	C	T	rs370307347		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_012450	exon2	c.G108A	p.S36S	AGCACACGAGGCC	.	426.0	75.0	341.0	0.0	.	.	.	Atlas-SNP
LTB4R2	56413	hgsc.bcm.edu	37	14	24780848	24780848	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_019839	exon2	c.G978C	p.E326D	CATGGAGCTCCGA	.	38.0	5.0	41.0	0.0	.	.	.	Atlas-SNP
PACRGL	133015	hgsc.bcm.edu	37	4	20706400	20706400	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_001258345	exon3	c.G170C	p.R57T	ATCCTAGACCAAG	.	126.0	32.0	220.0	0.0	.	.	.	Atlas-SNP
RGS12	6002	hgsc.bcm.edu	37	4	3319118	3319118	+	Silent	SNP	C	C	T	rs372019148		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_002926	exon2	c.C1221T	p.D407D	TCTGGACGGGGAC	.	57.0	14.0	113.0	0.0	.	.	.	Atlas-SNP
RIF1	55183	hgsc.bcm.edu	37	2	152320914	152320914	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_018151	exon30	c.C4880G	p.T1627S	GTAATACTGTAAT	.	88.0	24.0	112.0	0.0	.	.	.	Atlas-SNP
HSPA9	3313	hgsc.bcm.edu	37	5	137902699	137902699	+	Missense_Mutation	SNP	G	G	T	rs202180095		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_004134	exon8	c.C870A	p.F290L	TCTCTTGAACTCC	.	247.0	29.0	228.0	0.0	0.001	.	.	Atlas-SNP
ASAP3	55616	hgsc.bcm.edu	37	1	23763670	23763670	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_017707	exon14	c.T1295C	p.V432A	CTCTTCACCTCCG	.	122.0	15.0	120.0	0.0	.	.	.	Atlas-SNP
STK3	6788	hgsc.bcm.edu	37	8	99608285	99608285	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_001256312	exon9	c.G881T	p.R294I	GTAGCTCTCTGCT	.	185.0	35.0	190.0	0.0	.	.	.	Atlas-SNP
PTMA	5757	hgsc.bcm.edu	37	2	232577559	232577559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	PTMA,NS,carcinoma,0,2	PTMA	NM_001099285	exon5	c.T334C	p.X112Q	GATGACTAGACAG	.	45.0	5.0	30.0	1.0	.	0	2	Atlas-SNP
ORAI2	80228	hgsc.bcm.edu	37	7	102087325	102087325	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_032831	exon3	c.C591T	p.A197A	GGCCGCCCTGGTG	.	75.0	20.0	61.0	0.0	.	.	.	Atlas-SNP
HSPA9	3313	hgsc.bcm.edu	37	5	137902698	137902698	+	Missense_Mutation	SNP	T	T	G	rs199831172	bycluster	TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_004134	exon8	c.A871C	p.K291Q	CTCTCTTGAACTC	.	240.0	29.0	228.0	0.0	0.001	.	.	Atlas-SNP
ZFHX4	79776	hgsc.bcm.edu	37	8	77761779	77761779	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_024721	exon8	c.G3677C	p.S1226T	ACAATAGTAGGGA	.	102.0	9.0	104.0	0.0	.	.	.	Atlas-SNP
PCYT2	5833	hgsc.bcm.edu	37	17	79866849	79866849	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_002861	exon3	c.G243C	p.Q81H	GATGGCCTGCACC	.	119.0	16.0	142.0	0.0	.	.	.	Atlas-SNP
LRRC45	201255	hgsc.bcm.edu	37	17	79988252	79988252	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_144999	exon16	c.C1726T	p.L576L	GTGGAGCTGCAGG	.	62.0	7.0	59.0	0.0	.	.	.	Atlas-SNP
LRP8	7804	hgsc.bcm.edu	37	1	53724042	53724042	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_004631	exon14	c.G2158T	p.A720S	GACAGGCACATGT	.	163.0	12.0	134.0	0.0	.	.	.	Atlas-SNP
TTBK1	84630	hgsc.bcm.edu	37	6	43230837	43230837	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_032538	exon13	c.G1735A	p.E579K	CTGCCCGAGGAGG	.	130.0	8.0	106.0	0.0	.	.	.	Atlas-SNP
PDIK1L	149420	hgsc.bcm.edu	37	1	26441057	26441057	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_001243532	exon2	c.C258G	p.H86Q	GTCCCACGGCTCT	.	104.0	8.0	87.0	0.0	.	.	.	Atlas-SNP
WDR45	11152	hgsc.bcm.edu	37	X	48935722	48935722	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_007075	exon3	c.C33G	p.S11R	ACGCAGGCTGGTC	.	93.0	7.0	69.0	0.0	.	.	.	Atlas-SNP
FNTA	2339	hgsc.bcm.edu	37	8	42940420	42940420	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	FNTA,NS,carcinoma,-1,1	FNTA	NM_002027	exon9	c.C1135T	p.Q379X	GTACAGCAATAAC	.	297.0	59.0	281.0	0.0	.	-1	1	Atlas-SNP
USP54	159195	hgsc.bcm.edu	37	10	75279658	75279658	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_152586	exon17	c.C2575T	p.R859W	GGCTCCGTGCTTT	.	83.0	4.0	67.0	0.0	.	.	.	Atlas-SNP
