Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
GJA9	81025	hgsc.bcm.edu	37	1	39340765	39340766	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	GJA9	NM_030772	exon2	c.1006_1007del	p.336_336del	.	.	140.0	27.0	113.0	0.0	.	55	.	Pindel,Atlas-Indel
RPGR	6103	hgsc.bcm.edu	37	X	38146264	38146264	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_001034853	exon15	c.G1988C	p.S663T	CCTGAACTACCTT	.	139.0	51.0	134.0	0.0	.	.	.	Atlas-SNP
ANKRD50	57182	hgsc.bcm.edu	37	4	125599937	125599937	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_020337	exon3	c.G636A	p.G212G	AACAGTCCCAGAT	.	148.0	36.0	151.0	0.0	.	.	.	Atlas-SNP
CCDC142	84865	hgsc.bcm.edu	37	2	74709738	74709738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_032779	exon1	c.G227A	p.R76Q	GGCCCCCGCCTCC	.	54.0	12.0	54.0	0.0	.	.	.	Atlas-SNP
SHANK2	22941	hgsc.bcm.edu	37	11	70332654	70332654	+	Nonsense_Mutation	SNP	G	G	T	rs375960981	alternate_allele	TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_133266	exon10	c.C1980A	p.Y660X	ATCAATGTAAAGA	.	96.0	4.0	131.0	0.0	.	.	.	Atlas-SNP
IPO11	51194	hgsc.bcm.edu	37	5	61772516	61772516	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_001134779	exon9	c.G884A	p.S295N	GTAGAAGTATAGG	.	552.0	180.0	712.0	0.0	.	.	.	Atlas-SNP
ADAM32	203102	hgsc.bcm.edu	37	8	39079164	39079164	+	Silent	SNP	T	T	G	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_145004	exon13	c.T1269G	p.T423T	TCGAACTTGTGTA	.	125.0	35.0	67.0	0.0	.	.	.	Atlas-SNP
SECISBP2	79048	hgsc.bcm.edu	37	9	91940430	91940430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	SECISBP2,NS,carcinoma,0,1	SECISBP2	NM_024077	exon3	c.G271A	p.A91T	CCATATGCCTATT	.	163.0	54.0	178.0	0.0	.	0	1	Atlas-SNP
FCRLB	127943	hgsc.bcm.edu	37	1	161693309	161693309	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	FCRLB,NS,carcinoma,-2,1	FCRLB	NM_001002901	exon3	c.C205T	p.P69S	CTTCTGCCCTCTC	.	177.0	33.0	201.0	1.0	.	-2	1	Atlas-SNP
PTBP2	58155	hgsc.bcm.edu	37	1	97235325	97235325	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_021190	exon4	c.T182A	p.L61H	GTGTACTTCATAT	.	209.0	55.0	192.0	0.0	.	.	.	Atlas-SNP
DSPP	1834	hgsc.bcm.edu	37	4	88536437	88536437	+	Missense_Mutation	SNP	A	A	G	rs200670885		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_014208	exon5	c.A2623G	p.N875D	AGCAGCAACAGCA	.	115.0	11.0	114.0	0.0	.	.	.	Atlas-SNP
DSPP	1834	hgsc.bcm.edu	37	4	88536847	88536847	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_014208	exon5	c.C3033T	p.D1011D	CAGTGACAGCAGT	.	86.0	12.0	70.0	0.0	.	.	.	Atlas-SNP
PLEKHN1	84069	hgsc.bcm.edu	37	1	906518	906518	+	Missense_Mutation	SNP	C	C	T	rs199724483	by1000genomes	TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	PLEKHN1,NS,carcinoma,0,1	PLEKHN1	NM_001160184	exon7	c.C674T	p.A225V	GGACGGCGTCAGG	.	77.0	5.0	76.0	0.0	0.002	0	1	Atlas-SNP
MOGS	7841	hgsc.bcm.edu	37	2	74691780	74691780	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_006302	exon2	c.A422G	p.D141G	ACACCGTCCCCCT	.	142.0	6.0	145.0	0.0	.	.	.	Atlas-SNP
FNDC1	84624	hgsc.bcm.edu	37	6	159653823	159653823	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	FNDC1,colon,carcinoma,0,3	FNDC1	NM_032532	exon11	c.G2279A	p.R760Q	CATCACGGTCCAC	.	56.0	7.0	75.0	0.0	.	0	3	Atlas-SNP
RNU6-71	100873774	hgsc.bcm.edu	37	6	56141616	56141616	+	RNA	SNP	T	T	G	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	.	.	.	.	TTTTGTTTTTTTT	.	49.0	5.0	59.0	0.0	.	.	.	Atlas-SNP
ABCC1	4363	hgsc.bcm.edu	37	16	16225711	16225711	+	Missense_Mutation	SNP	C	C	A	rs45533037	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_004996	exon27	c.C3885A	p.F1295L	GGAATTCCGGAAC	.	113.0	11.0	106.0	0.0	.	.	.	Atlas-SNP
CDH24	64403	hgsc.bcm.edu	37	14	23524544	23524544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	CDH24_ENST00000397359,colon,carcinoma,0,2	CDH24_ENST00000397359	NM_022478	exon3	c.C220T	p.R74W	CTCCCCGGTCAAC	.	92.0	15.0	80.0	0.0	.	0	2	Atlas-SNP
IFNAR1	3454	hgsc.bcm.edu	37	21	34715721	34715721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_000629	exon4	c.G524A	p.G175D	CTTCAGGTGTAGA	.	108.0	29.0	92.0	0.0	.	.	.	Atlas-SNP
