Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
CNBP	7555	hgsc.bcm.edu	37	3	128889947	128889948	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	CNBP	NM_001127192	exon4	c.397_398insA	p.D133fs	.	.	52.0	15.0	44.0	0.0	.	12	.	Pindel,Atlas-Indel
WDR52	55779	hgsc.bcm.edu	37	3	113098310	113098310	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	WDR52,NS,carcinoma,+1,1	WDR52	NM_001164496	exon17	c.T2141A	p.M714K	TCTCCCATCTCTG	.	174.0	73.0	153.0	0.0	.	+1	1	Atlas-SNP
SYNJ2	8871	hgsc.bcm.edu	37	6	158449830	158449830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_003898	exon3	c.C257T	p.T86I	GCTGCACATCTGT	.	119.0	13.0	115.0	0.0	.	.	.	Atlas-SNP
GOLGA6L1	283767	hgsc.bcm.edu	37	15	22742718	22742718	+	Missense_Mutation	SNP	T	T	A	rs77248890		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	GOLGA6L1,NS,carcinoma,0,3	GOLGA6L1	NM_001001413	exon8	c.T1103A	p.L368Q	GGAGGCTGGAGGA	.	84.0	4.0	68.0	1.0	0.125	0	3	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	37	7	82595343	82595343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_014510	exon4	c.C3761T	p.T1254I	GCTGATGTTTTTG	.	430.0	86.0	267.0	0.0	.	.	.	Atlas-SNP
MYH7	4625	hgsc.bcm.edu	37	14	23885334	23885334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	MYH7,NS,carcinoma,0,1	MYH7	NM_000257	exon34	c.C4832T	p.A1611V	CTCAGGGCCTCGT	.	119.0	6.0	123.0	1.0	.	0	1	Atlas-SNP
BBS9	27241	hgsc.bcm.edu	37	7	33388730	33388730	+	Silent	SNP	C	C	T	rs376024532		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_014451	exon13	c.C1380T	p.Y460Y	AGTCTACGTGCAA	.	455.0	99.0	276.0	0.0	.	.	.	Atlas-SNP
BCYRN1	618	hgsc.bcm.edu	37	X	70640921	70640921	+	RNA	SNP	T	T	C	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	.	.	.	.	TACTACTGTGTGT	.	16.0	5.0	10.0	0.0	.	.	.	Atlas-SNP
NPHP3-ACAD11	0	hgsc.bcm.edu	37	3	132321819	132321819	+	RNA	SNP	G	G	T	rs111404721	bycluster;byfrequency;by1000genomes	TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	.	.	.	.	ATTTTTGTATTTT	.	7.0	6.0	6.0	0.0	0.005	.	.	Atlas-SNP
CCDC144B	284047	hgsc.bcm.edu	37	17	18528523	18528523	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	.	.	.	.	CAAGATCTTCCAG	.	231.0	67.0	169.0	0.0	.	.	.	Atlas-SNP
TBC1D9	23158	hgsc.bcm.edu	37	4	141545359	141545359	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_015130	exon20	c.T2989A	p.S997T	CTTGGGAATTTGC	.	166.0	8.0	168.0	0.0	.	.	.	Atlas-SNP
PCYT1B	9468	hgsc.bcm.edu	37	X	24665186	24665186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_004845	exon1	c.G37A	p.G13S	GGATACCTGTTTC	.	177.0	74.0	91.0	0.0	.	.	.	Atlas-SNP
ETV2	2116	hgsc.bcm.edu	37	19	36134398	36134398	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_014209	exon5	c.G458A	p.S153N	ACACCAGCTGGGA	.	105.0	8.0	90.0	0.0	.	.	.	Atlas-SNP
PIEZO1	9780	hgsc.bcm.edu	37	16	88800395	88800395	+	Missense_Mutation	SNP	C	C	G	rs202139830		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_001142864	exon17	c.G2248C	p.E750Q	CCTCCTCCTGCTG	.	75.0	4.0	36.0	0.0	.	.	.	Atlas-SNP
ACIN1	22985	hgsc.bcm.edu	37	14	23549896	23549896	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_001164814	exon6	c.G822A	p.E274E	CTCCTCCTCTTCT	.	105.0	5.0	102.0	0.0	.	.	.	Atlas-SNP
FLJ36000	0	hgsc.bcm.edu	37	17	21906351	21906351	+	RNA	SNP	A	A	G	rs11150720	bycluster;byfrequency;by2hit2allele;byhapmap	TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	.	.	.	.	TTAGGAACCAGTC	.	85.0	11.0	36.0	0.0	0.167	.	.	Atlas-SNP
MAGEA10	4109	hgsc.bcm.edu	37	X	151303919	151303919	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_001011543	exon5	c.C174T	p.S58S	GGAGGAGGAAGAG	.	98.0	4.0	56.0	0.0	.	.	.	Atlas-SNP
PRMT2	3275	hgsc.bcm.edu	37	21	48071767	48071767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_001242865	exon7	c.G704A	p.G235D	CGTCTGGCCCTCT	.	170.0	34.0	143.0	0.0	.	.	.	Atlas-SNP
NF1	4763	hgsc.bcm.edu	37	17	29527570	29527570	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_001128147	exon9	c.C1019G	p.S340C	ATAACTCTGTCAT	.	78.0	21.0	59.0	0.0	.	.	.	Atlas-SNP
NACAD	23148	hgsc.bcm.edu	37	7	45122754	45122754	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	NACAD,NS,carcinoma,+2,1	NACAD	NM_001146334	exon2	c.G3025T	p.A1009S	TCCCAGCTTCTGC	.	116.0	27.0	76.0	0.0	.	+2	1	Atlas-SNP
PTMA	5757	hgsc.bcm.edu	37	2	232577559	232577559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	PTMA,NS,carcinoma,0,2	PTMA	NM_001099285	exon5	c.T334C	p.X112Q	GATGACTAGACAG	.	64.0	4.0	55.0	1.0	.	0	2	Atlas-SNP
EMID1	129080	hgsc.bcm.edu	37	22	29622540	29622540	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_133455	exon5	c.G465C	p.K155N	GGCCAAGGTGGGT	.	38.0	17.0	54.0	0.0	.	.	.	Atlas-SNP
TNNT3	7140	hgsc.bcm.edu	37	11	1955860	1955860	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_006757	exon13	c.G565T	p.D189Y	AACATCGATCACC	.	105.0	5.0	80.0	0.0	.	.	.	Atlas-SNP
DRD5	1816	hgsc.bcm.edu	37	4	9783971	9783971	+	Silent	SNP	C	C	T	rs113695344		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	DRD5,rectum,carcinoma,0,1	DRD5	NM_000798	exon1	c.C318T	p.Y106Y	CGGTTACTGGCCC	.	77.0	7.0	88.0	1.0	0.500	0	1	Atlas-SNP
RNU6-28	100873756	hgsc.bcm.edu	37	15	43677978	43677978	+	RNA	SNP	T	T	A	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	.	.	.	.	ACTCTTTCCTTGA	.	140.0	81.0	100.0	0.0	.	.	.	Atlas-SNP
ASAP3	55616	hgsc.bcm.edu	37	1	23763530	23763530	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_017707	exon15	c.G1350T	p.T450T	GAGCCACGTGGGG	.	98.0	26.0	69.0	0.0	.	.	.	Atlas-SNP
BICC1	80114	hgsc.bcm.edu	37	10	60560687	60560687	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	BICC1,colon,carcinoma,+1,2	BICC1	NM_001080512	exon14	c.A1896G	p.R632R	GCCTCGAAGTCCT	.	102.0	33.0	145.0	0.0	.	+1	2	Atlas-SNP
KIAA0195	9772	hgsc.bcm.edu	37	17	73484174	73484174	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_014738	exon6	c.A571T	p.R191W	GCTTTGAGGCCTG	.	147.0	41.0	104.0	0.0	.	.	.	Atlas-SNP
ITGB3	3690	hgsc.bcm.edu	37	17	45376796	45376796	+	Missense_Mutation	SNP	G	G	A	rs144884023		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_000212	exon11	c.G1813A	p.G605S	GGCCGCGGCAAGT	.	143.0	37.0	105.0	0.0	0.000	.	.	Atlas-SNP
COX1	5742	hgsc.bcm.edu	37	MT	6517	6517	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	ENST00000361624	exon1	c.G614A	p.G205D	CTGCTGGCATCAC	.	27.0	26.0	15.0	0.0	.	.	.	Atlas-SNP
