Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
PCDH10	57575	hgsc.bcm.edu	37	4	134072954	134072954	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	PCDH10,NS,carcinoma,+2,1	PCDH10	NM_032961	exon1	c.G1659T	p.A553A	CCAGGCGCTGGCT	.	46.0	3.0	80.0	0.0	.	+2	1	Atlas-SNP
IRAK1	3654	hgsc.bcm.edu	37	X	153278098	153278098	+	Silent	SNP	C	C	G	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_001569	exon13	c.G1962C	p.S654S	CTCTGACGACGAT	.	89.0	23.0	74.0	0.0	.	.	.	Atlas-SNP
HLA-A	3105	hgsc.bcm.edu	37	6	29911272	29911272	+	Missense_Mutation	SNP	T	T	A	rs76185201	bycluster;byfrequency;by1000genomes	TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	HLA-A,colon,carcinoma,0,1	HLA-A	NM_001242758	exon3	c.T571A	p.W191R	GTGGAGTGGCTCC	.	90.0	6.0	67.0	1.0	0.001	0	1	Atlas-SNP
NCOR2	9612	hgsc.bcm.edu	37	12	124887102	124887102	+	Silent	SNP	C	C	T	rs7488825	bycluster;alternate_allele	TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_006312	exon16	c.G1488A	p.Q496Q	TTGTTGCTGCTGC	.	66.0	7.0	43.0	0.0	.	.	.	Atlas-SNP
C2orf74	339804	hgsc.bcm.edu	37	2	61389989	61389989	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_001143959	exon2	c.G129A	p.R43R	AGGCAGGAAAGGT	.	127.0	36.0	157.0	0.0	.	.	.	Atlas-SNP
PTMA	5757	hgsc.bcm.edu	37	2	232577559	232577559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	PTMA,NS,carcinoma,0,2	PTMA	NM_001099285	exon5	c.T334C	p.X112Q	GATGACTAGACAG	.	35.0	5.0	38.0	1.0	.	0	2	Atlas-SNP
NEK1	4750	hgsc.bcm.edu	37	4	170345935	170345935	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_001199397	exon31	c.T2991G	p.D997E	CTGAGAATCATTG	.	93.0	9.0	86.0	0.0	.	.	.	Atlas-SNP
NRD1	4898	hgsc.bcm.edu	37	1	52306066	52306066	+	Missense_Mutation	SNP	T	T	A	rs72663147	bycluster	TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	NRD1,NS,other,0,1	NRD1	NM_002525	exon2	c.A462T	p.E154D	ATCATCTTCTTCT	.	143.0	6.0	91.0	0.0	.	0	1	Atlas-SNP
MAGI1	9223	hgsc.bcm.edu	37	3	65425591	65425591	+	Silent	SNP	T	T	C	rs79701778		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	MAGI1_ENST00000402939,NS,carcinoma,0,3	MAGI1_ENST00000402939	NM_001033057	exon9	c.A1233G	p.Q411Q	CTGCTGTTGCTGC	.	34.0	6.0	32.0	2.0	0.500	0	3	Atlas-SNP
TRIP6	7205	hgsc.bcm.edu	37	7	100466178	100466178	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_003302	exon4	c.C425A	p.S142X	CAGCCTCGCCGCT	.	66.0	19.0	54.0	0.0	.	.	.	Atlas-SNP
FGD4	121512	hgsc.bcm.edu	37	12	32734925	32734925	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_139241	exon4	c.G124T	p.E42X	AAGAAAGAGTCTG	.	260.0	11.0	108.0	0.0	.	.	.	Atlas-SNP
FAM129A	116496	hgsc.bcm.edu	37	1	184767257	184767257	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_052966	exon13	c.A1622T	p.Y541F	TCCTCATAGACAT	.	54.0	17.0	64.0	0.0	.	.	.	Atlas-SNP
RAF1	5894	hgsc.bcm.edu	37	3	12641718	12641718	+	Missense_Mutation	SNP	G	G	A	rs5746220	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_002880	exon9	c.C923T	p.P308L	GTTTTCGGCTGTG	.	143.0	36.0	114.0	0.0	0.009	.	.	Atlas-SNP
CEL	1056	hgsc.bcm.edu	37	9	135947115	135947115	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_001807	exon11	c.C2235T	p.S745S	TGACTCCAAGGAA	.	72.0	10.0	35.0	0.0	.	.	.	Atlas-SNP
CEL	1056	hgsc.bcm.edu	37	9	135947116	135947116	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_001807	exon11	c.A2236G	p.K746E	GACTCCAAGGAAG	.	73.0	11.0	36.0	0.0	.	.	.	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	37	8	3226879	3226879	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_033225	exon19	c.C2796A	p.G932G	GATGTAGCCTCCA	.	106.0	5.0	75.0	0.0	.	.	.	Atlas-SNP
KAZN	23254	hgsc.bcm.edu	37	1	15392249	15392249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	RP1-21O18_1,NS,carcinoma,-1,1	RP1-21O18_1	NM_015209	exon8	c.G1222T	p.G408C	TTTGATGGTACCG	.	97.0	4.0	75.0	0.0	.	-1	1	Atlas-SNP
PIM3	415116	hgsc.bcm.edu	37	22	50355011	50355011	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_001001852	exon3	c.A241G	p.S81G	TGGGGCAGCCTGG	.	116.0	20.0	115.0	0.0	.	.	.	Atlas-SNP
