Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
NPHP3	27031	hgsc.bcm.edu	37	3	132408024	132408024	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_153240	exon20	c.T2777G	p.L926W	TGCTTCAATGAAT	.	113.0	25.0	134.0	0.0	.	.	.	Atlas-SNP
GALNT1	2589	hgsc.bcm.edu	37	18	33263468	33263468	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_020474	exon4	c.G595T	p.V199L	GCTGCTGTGTCTA	.	64.0	21.0	102.0	0.0	.	.	.	Atlas-SNP
SURF4	6836	hgsc.bcm.edu	37	9	136234314	136234314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_033161	exon2	c.G56A	p.R19H	GTGACACGGAGGA	.	41.0	5.0	49.0	0.0	.	.	.	Atlas-SNP
CHRM3	1131	hgsc.bcm.edu	37	1	240071655	240071655	+	Missense_Mutation	SNP	C	C	T	rs200967479		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	CHRM3,colon,carcinoma,0,1	CHRM3	NM_000740	exon5	c.C904T	p.R302C	ATGAAACGCTCCA	.	134.0	27.0	136.0	0.0	.	0	1	Atlas-SNP
C2orf54	79919	hgsc.bcm.edu	37	2	241835040	241835040	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_001085437	exon1	c.C375T	p.T125T	ATCCTCGGTGGTC	.	108.0	10.0	114.0	0.0	.	.	.	Atlas-SNP
POM121L12	285877	hgsc.bcm.edu	37	7	53103898	53103898	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_182595	exon1	c.G534T	p.L178L	GACTCTGCTGGGG	.	34.0	9.0	35.0	0.0	.	.	.	Atlas-SNP
SHROOM3	57619	hgsc.bcm.edu	37	4	77631363	77631363	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_020859	exon3	c.C378A	p.S126R	CGTCAGCCCAGAA	.	199.0	69.0	245.0	0.0	.	.	.	Atlas-SNP
PDXDC1	23042	hgsc.bcm.edu	37	16	15122751	15122751	+	Silent	SNP	C	C	T	rs117411702	bycluster	TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	PDXDC1,NS,carcinoma,0,3	PDXDC1	NM_015027	exon15	c.C1221T	p.A407A	TAAAGCCGTCCCA	.	98.0	10.0	70.0	1.0	0.002	0	3	Atlas-SNP
ITPR1	3708	hgsc.bcm.edu	37	3	4687295	4687295	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_001099952	exon10	c.G738A	p.E246E	TGCTGAGCAGGAG	.	101.0	24.0	98.0	0.0	.	.	.	Atlas-SNP
C17orf99	100141515	hgsc.bcm.edu	37	17	76162016	76162016	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_001163075	exon5	c.C687A	p.P229P	GAGCCCCATCCTT	.	111.0	24.0	99.0	0.0	.	.	.	Atlas-SNP
YRDC	79693	hgsc.bcm.edu	37	1	38270037	38270037	+	Missense_Mutation	SNP	C	C	T	rs138070077		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	YRDC,NS,carcinoma,0,1	YRDC	NM_024640	exon4	c.G704A	p.R235H	CCAAGGCGACACT	.	156.0	13.0	153.0	0.0	0.000	0	1	Atlas-SNP
RP1L1	94137	hgsc.bcm.edu	37	8	10466010	10466010	+	Missense_Mutation	SNP	C	C	A	rs181718385	bycluster;byfrequency	TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	RP1L1,NS,malignant_melanoma,0,1	RP1L1	NM_178857	exon4	c.G5598T	p.E1866D	CTGGGCCTCCCCT	.	29.0	8.0	46.0	0.0	0.008	0	1	Atlas-SNP
RPAP1	26015	hgsc.bcm.edu	37	15	41819688	41819688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_015540	exon12	c.C1544T	p.A515V	CTTTTTGCTTTTC	.	88.0	8.0	105.0	0.0	.	.	.	Atlas-SNP
ADAM28	10863	hgsc.bcm.edu	37	8	24151704	24151704	+	Silent	SNP	T	T	G	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_014265	exon1	c.T42G	p.V14V	CTCTGTTGCAGGT	.	82.0	15.0	87.0	0.0	.	.	.	Atlas-SNP
LPA	4018	hgsc.bcm.edu	37	6	160999712	160999712	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_005577	exon28	c.G4314T	p.R1438S	TGGATTCCTGCAG	.	97.0	18.0	93.0	0.0	.	.	.	Atlas-SNP
OTUD4	54726	hgsc.bcm.edu	37	4	146059041	146059041	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	OTUD4,bladder,carcinoma,0,2	OTUD4	NM_001102653	exon21	c.T2691C	p.H897H	GGGAGGATGAGCC	.	70.0	3.0	122.0	0.0	.	0	2	Atlas-SNP
KRT2	3849	hgsc.bcm.edu	37	12	53045597	53045597	+	Silent	SNP	A	A	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_000423	exon1	c.T330A	p.G110G	ACCACCACCACTG	.	149.0	6.0	121.0	0.0	.	.	.	Atlas-SNP
FOXM1	2305	hgsc.bcm.edu	37	12	2983605	2983605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_001243089	exon2	c.C40T	p.R14W	GCCTCCGTCTTTT	.	100.0	6.0	55.0	0.0	.	.	.	Atlas-SNP
OSBPL7	114881	hgsc.bcm.edu	37	17	45891018	45891018	+	Missense_Mutation	SNP	C	C	G	rs139618928	alternate_allele	TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_145798	exon15	c.G1534C	p.E512Q	GCTCCTCGCAGAG	.	91.0	14.0	99.0	0.0	.	.	.	Atlas-SNP
GRB7	2886	hgsc.bcm.edu	37	17	37901196	37901196	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_001242442	exon9	c.C1039T	p.Q347X	GATGAGCAGAGCC	.	136.0	32.0	126.0	0.0	.	.	.	Atlas-SNP
HMHA1	23526	hgsc.bcm.edu	37	19	1073680	1073680	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_001258328	exon5	c.G706A	p.E236K	GTGTCCGAGTTCC	.	38.0	9.0	41.0	0.0	.	.	.	Atlas-SNP
TCEANC	170082	hgsc.bcm.edu	37	X	13681576	13681576	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_152634	exon4	c.C1039T	p.L347F	CTTTTCCTTCCCA	.	123.0	12.0	108.0	0.0	.	.	.	Atlas-SNP
SLC12A7	10723	hgsc.bcm.edu	37	5	1093664	1093664	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_006598	exon3	c.G326T	p.R109L	CGCCGCCGGCTCT	.	50.0	16.0	36.0	0.0	.	.	.	Atlas-SNP
ARHGAP10	79658	hgsc.bcm.edu	37	4	148993187	148993187	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_024605	exon23	c.C2316G	p.N772K	TCTGAACGGCAAG	.	59.0	12.0	53.0	0.0	.	.	.	Atlas-SNP
TUBB1	81027	hgsc.bcm.edu	37	20	57599434	57599434	+	Missense_Mutation	SNP	C	C	T	rs121918555	bycluster;by1000genomes	TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_030773	exon4	c.C952T	p.R318W	ATTTTCCGGGGCA	.	69.0	4.0	43.0	0.0	0.000	.	.	Atlas-SNP
EHBP1L1	254102	hgsc.bcm.edu	37	11	65350457	65350457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_001099409	exon9	c.G2314A	p.A772T	GAAGGTGCGATAT	.	80.0	17.0	88.0	0.0	.	.	.	Atlas-SNP
CR1	1378	hgsc.bcm.edu	37	1	207787775	207787775	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_000651	exon40	c.G6602A	p.S2201N	CTGCTAGTCATTG	.	100.0	31.0	101.0	0.0	.	.	.	Atlas-SNP
GOLGA3	2802	hgsc.bcm.edu	37	12	133353241	133353241	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	GOLGA3,right_upper_lobe,carcinoma,0,2	GOLGA3	NM_005895	exon21	c.A3957G	p.E1319E	TAGCCCTTCCAGT	.	62.0	3.0	82.0	2.0	.	0	2	Atlas-SNP
ZCCHC2	54877	hgsc.bcm.edu	37	18	60191501	60191501	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_017742	exon1	c.G844A	p.E282K	CTGAGGGAACACT	.	41.0	17.0	53.0	0.0	.	.	.	Atlas-SNP
PFDN4	5203	hgsc.bcm.edu	37	20	52830954	52830954	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_002623	exon2	c.C89G	p.T30R	GGAATACAAGTAG	.	395.0	117.0	372.0	0.0	.	.	.	Atlas-SNP
RP1L1	94137	hgsc.bcm.edu	37	8	10465934	10465934	+	Missense_Mutation	SNP	T	T	C	rs202056828		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	RP1L1,NS,carcinoma,+1,1	RP1L1	NM_178857	exon4	c.A5674G	p.T1892A	CTGGGGTCTCTAC	.	56.0	10.0	64.0	2.0	.	+1	1	Atlas-SNP
LRRC8B	23507	hgsc.bcm.edu	37	1	90048812	90048812	+	Silent	SNP	C	C	T	rs116502828	bycluster;byfrequency;by1000genomes	TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_015350	exon5	c.C603T	p.S201S	AGATTCCGGCAAA	.	70.0	5.0	79.0	0.0	0.003	.	.	Atlas-SNP
NISCH	11188	hgsc.bcm.edu	37	3	52492740	52492740	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_001276293	exon3	c.C240G	p.N80K	GAAAAACTCAAGA	.	110.0	23.0	97.0	0.0	.	.	.	Atlas-SNP
MIR548W	100422923	hgsc.bcm.edu	37	17	60879148	60879148	+	RNA	SNP	G	G	C	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	.	.	.	.	GTGTTAGAGTCCT	.	56.0	16.0	61.0	0.0	.	.	.	Atlas-SNP
SSX9	280660	hgsc.bcm.edu	37	X	48161015	48161015	+	RNA	SNP	A	A	C	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	.	.	.	.	GGTGCTACATCAG	.	167.0	54.0	152.0	0.0	.	.	.	Atlas-SNP
MLL3	58508	hgsc.bcm.edu	37	7	151845608	151845608	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_170606	exon52	c.G13404A	p.T4468T	GGCACCCGTCTTG	.	108.0	6.0	86.0	0.0	.	.	.	Atlas-SNP
PRDM9	56979	hgsc.bcm.edu	37	5	23527778	23527778	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_020227	exon11	c.G2581A	p.V861I	CCCTACGTCTGCA	.	191.0	39.0	209.0	0.0	.	.	.	Atlas-SNP
EGFLAM	133584	hgsc.bcm.edu	37	5	38448404	38448404	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_001205301	exon19	c.G2490T	p.T830T	CCCAGCGATCATA	.	70.0	4.0	69.0	0.0	.	.	.	Atlas-SNP
TRIM5	85363	hgsc.bcm.edu	37	11	5699638	5699638	+	Silent	SNP	G	G	A	rs182373551	bycluster;by1000genomes	TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	TRIM5_ENST00000380034,extremity,malignant_melanoma,-1,2	TRIM5_ENST00000380034	NM_033093	exon4	c.C540T	p.N180N	CAAGACGTTGGTT	.	131.0	8.0	178.0	0.0	0.000	-1	2	Atlas-SNP
RRP7B	91695	hgsc.bcm.edu	37	22	42976780	42976780	+	RNA	SNP	A	A	C	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	.	.	.	.	GGCCTCACACATG	.	266.0	70.0	347.0	0.0	.	.	.	Atlas-SNP
PHEX	5251	hgsc.bcm.edu	37	X	22208575	22208575	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_000444	exon15	c.C1601T	p.P534L	CAAATCCGACGAC	.	80.0	21.0	67.0	0.0	.	.	.	Atlas-SNP
RP1L1	94137	hgsc.bcm.edu	37	8	10466019	10466019	+	Silent	SNP	A	A	T	rs199577777	byfrequency	TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	RP1L1,NS,carcinoma,-1,1	RP1L1	NM_178857	exon4	c.T5589A	p.A1863A	CCCTTCAGCCTCC	.	30.0	11.0	48.0	1.0	0.007	-1	1	Atlas-SNP
KRT81	3887	hgsc.bcm.edu	37	12	52681795	52681795	+	Silent	SNP	G	G	T	rs200239075	by1000genomes;alternate_allele	TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	KRT81,NS,lymphoid_neoplasm,0,1	KRT81	NM_002281	exon5	c.C873A	p.A291A	GGCCTCGGCCCGG	.	97.0	4.0	73.0	0.0	.	0	1	Atlas-SNP
