Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
KIAA1217	56243	hgsc.bcm.edu	37	10	24810770	24810770	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	KIAA1217,colon,carcinoma,0,1	KIAA1217	NM_019590	exon12	c.G2368T	p.V790L	GAGGCCGTGCGGT	.	58.0	3.0	48.0	0.0	.	0	1	Atlas-SNP
MMP23A	8511	hgsc.bcm.edu	37	1	1569784	1569784	+	RNA	SNP	C	C	G	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	.	.	.	.	AGGCAGCGGGGGG	.	62.0	6.0	52.0	0.0	.	.	.	Atlas-SNP
BIRC6	57448	hgsc.bcm.edu	37	2	32626436	32626436	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_016252	exon7	c.G1240C	p.V414L	TGGGATGTTTCCA	.	200.0	26.0	131.0	0.0	.	.	.	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195508975	195508975	+	Missense_Mutation	SNP	G	G	T	rs76458870	byfrequency	TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4_ENST00000463781	NM_018406	exon2	c.C9476A	p.S3159Y	GCTGAGGAAGTGT	.	97.0	5.0	83.0	1.0	0.500	0	1	Atlas-SNP
PLEKHM1	9842	hgsc.bcm.edu	37	17	43522989	43522989	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_014798	exon9	c.C2684T	p.A895V	GGCTGGGCCCGGA	.	166.0	32.0	118.0	0.0	.	.	.	Atlas-SNP
SLC37A1	54020	hgsc.bcm.edu	37	21	43999906	43999906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_018964	exon20	c.G1582A	p.V528I	GACCAAGTTCCGT	.	95.0	11.0	42.0	0.0	.	.	.	Atlas-SNP
ANK3	288	hgsc.bcm.edu	37	10	61844468	61844468	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001204404	exon33	c.T3969A	p.D1323E	TACGGGATCATTC	.	176.0	23.0	135.0	0.0	.	.	.	Atlas-SNP
SEC31B	25956	hgsc.bcm.edu	37	10	102250017	102250017	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_015490	exon21	c.C2713T	p.P905S	TCCCAGGGAATCC	.	177.0	18.0	137.0	0.0	.	.	.	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	37	19	38948767	38948767	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001042723	exon18	c.G2002T	p.D668Y	ATGGTGGACGAGG	.	128.0	16.0	91.0	0.0	.	.	.	Atlas-SNP
MMS19	64210	hgsc.bcm.edu	37	10	99218609	99218609	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_022362	exon30	c.G3013A	p.D1005N	TGTCATCCAGGGG	.	206.0	22.0	150.0	0.0	.	.	.	Atlas-SNP
LRRC58	116064	hgsc.bcm.edu	37	3	120068022	120068022	+	Silent	SNP	C	C	G	rs6770482	bycluster;by1000genomes	TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001099678	exon1	c.G69C	p.V23V	GGTGGACACGCTG	.	4.0	4.0	6.0	0.0	0.175	.	.	Atlas-SNP
CKAP5	9793	hgsc.bcm.edu	37	11	46812057	46812057	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001008938	exon14	c.G1727C	p.G576A	TCCAGTCCTTTCT	.	146.0	9.0	165.0	0.0	.	.	.	Atlas-SNP
RANBP17	64901	hgsc.bcm.edu	37	5	170669748	170669748	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_022897	exon24	c.G2700T	p.M900I	CCATATGAGCTTC	.	193.0	20.0	152.0	0.0	.	.	.	Atlas-SNP
STAMBPL1	57559	hgsc.bcm.edu	37	10	90672864	90672864	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_020799	exon6	c.T427C	p.Y143H	AACAAATATAAAG	.	51.0	6.0	38.0	0.0	.	.	.	Atlas-SNP
SLC37A3	84255	hgsc.bcm.edu	37	7	140064288	140064288	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_207113	exon5	c.C295T	p.L99L	TGAATAGGCCCTA	.	207.0	18.0	110.0	0.0	.	.	.	Atlas-SNP
NAV1	89796	hgsc.bcm.edu	37	1	201786261	201786261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_020443	exon29	c.C5386T	p.R1796W	TGGGTCCGGGACA	.	96.0	4.0	84.0	0.0	.	.	.	Atlas-SNP
LRP12	29967	hgsc.bcm.edu	37	8	105509852	105509852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_013437	exon5	c.G928T	p.G310C	CATAACCAGTACC	.	401.0	37.0	255.0	0.0	.	.	.	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	37	7	100681533	100681533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001040105	exon3	c.C6836A	p.T2279N	GAACGACTCCATT	.	175.0	8.0	102.0	0.0	.	.	.	Atlas-SNP
RBM10	8241	hgsc.bcm.edu	37	X	47039331	47039331	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001204468	exon10	c.G1149T	p.G383G	CCTGGGGGCCCTG	.	136.0	28.0	134.0	0.0	.	.	.	Atlas-SNP
KIT	3815	hgsc.bcm.edu	37	4	55599338	55599338	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	KIT,NS,malignant_melanoma,0,44	KIT	NM_000222	exon17	c.A2464T	p.N822Y	GATTCTAATTATG	.	159.0	15.0	90.0	0.0	.	0	44	Atlas-SNP
FGFRL1	53834	hgsc.bcm.edu	37	4	1019078	1019078	+	Silent	SNP	T	T	A	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	FGFRL1,colon,carcinoma,+2,1	FGFRL1	NM_001004356	exon7	c.T1458A	p.S486S	ACACTCTCACACA	.	224.0	9.0	264.0	2.0	.	+2	1	Atlas-SNP
HYAL4	23553	hgsc.bcm.edu	37	7	123508991	123508991	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_012269	exon3	c.G664A	p.D222N	TATCCTGATTGCC	.	178.0	22.0	103.0	0.0	.	.	.	Atlas-SNP
SDK1	221935	hgsc.bcm.edu	37	7	4304811	4304811	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_152744	exon45	c.A6437G	p.Y2146C	ACCACTACATGAG	.	116.0	8.0	82.0	0.0	.	.	.	Atlas-SNP
KIAA0040	9674	hgsc.bcm.edu	37	1	175129958	175129958	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001162895	exon3	c.G192C	p.K64N	CTTGTTCTTCTCT	.	170.0	7.0	123.0	0.0	.	.	.	Atlas-SNP
MLL5	55904	hgsc.bcm.edu	37	7	104703808	104703808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGI-05A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	459ea529-76c5-4fde-9e29-b455607c9d96	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_018682	exon4	c.A197G	p.Y66C	ATAATTATGGTGC	.	241.0	30.0	134.0	0.0	.	.	.	Atlas-SNP
