Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
LAD1	3898	hgsc.bcm.edu	37	1	201356006	201356007	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	LAD1	NM_005558	exon3	c.483_484insT	p.L161fs	.	.	156.0	11.0	170.0	0.0	.	42	.	Atlas-Indel
MAGED1	9500	hgsc.bcm.edu	37	X	51637753	51637753	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_001005333	exon3	c.C76A	p.P26T	TGTCACCCCCTCC	.	119.0	39.0	107.0	0.0	.	.	.	Atlas-SNP
PALB2	79728	hgsc.bcm.edu	37	16	23614909	23614909	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_024675	exon13	c.C3432T	p.L1144L	CTGACCGAGAAGT	.	106.0	8.0	134.0	0.0	.	.	.	Atlas-SNP
NMNAT2	23057	hgsc.bcm.edu	37	1	183259297	183259297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_015039	exon4	c.G287A	p.C96Y	ACGCTGCAGGTCG	.	139.0	26.0	138.0	0.0	.	.	.	Atlas-SNP
LURAP1L	286343	hgsc.bcm.edu	37	9	12821707	12821707	+	Missense_Mutation	SNP	A	A	G	rs199636506	bycluster	TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_203403	exon2	c.A635G	p.Q212R	ACTCACAGGCACT	.	90.0	4.0	83.0	0.0	.	.	.	Atlas-SNP
PCMTD1	115294	hgsc.bcm.edu	37	8	52733191	52733191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	PCMTD1,NS,carcinoma,+1,1	PCMTD1	NM_052937	exon6	c.C794T	p.A265V	CCCTTGGCCTGCA	.	137.0	7.0	143.0	0.0	.	+1	1	Atlas-SNP
ACMSD	130013	hgsc.bcm.edu	37	2	135630212	135630212	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_138326	exon8	c.849+1G>T	.	GGAAAGGTAAGCC	.	140.0	28.0	94.0	0.0	.	.	.	Atlas-SNP
WDR45B	56270	hgsc.bcm.edu	37	17	80573887	80573887	+	Missense_Mutation	SNP	C	C	T	rs139641537		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_019613	exon10	c.G943A	p.G315S	AGCTGCCGTCTGC	.	79.0	8.0	70.0	0.0	0.000	.	.	Atlas-SNP
ENTHD2	146705	hgsc.bcm.edu	37	17	79204389	79204389	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_144679	exon11	c.G984A	p.E328E	GCTGAGCTCCTGC	.	65.0	10.0	60.0	0.0	.	.	.	Atlas-SNP
NXF4	55999	hgsc.bcm.edu	37	X	101819124	101819124	+	RNA	SNP	G	G	C	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	.	.	.	.	TCTCCTGTCTCTC	.	102.0	6.0	90.0	0.0	.	.	.	Atlas-SNP
RHEB	6009	hgsc.bcm.edu	37	7	151188050	151188050	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	RHEB,NS,carcinoma,0,3	RHEB	NM_005614	exon2	c.T103C	p.Y35H	GATCGTAGGAGTC	.	93.0	4.0	98.0	0.0	.	0	3	Atlas-SNP
E2F4	1874	hgsc.bcm.edu	37	16	67229841	67229841	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_001950	exon7	c.A965G	p.N322S	ACAGTAACAGCAG	.	128.0	7.0	104.0	0.0	.	.	.	Atlas-SNP
C4orf51	646603	hgsc.bcm.edu	37	4	146617775	146617775	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_001080531	exon2	c.G298C	p.D100H	ACTACAGATATCA	.	81.0	7.0	92.0	0.0	.	.	.	Atlas-SNP
ZBTB37	84614	hgsc.bcm.edu	37	1	173839947	173839947	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_032522	exon3	c.G584C	p.S195T	CCACCAGCCCTCA	.	144.0	31.0	139.0	0.0	.	.	.	Atlas-SNP
ZFPM2	23414	hgsc.bcm.edu	37	8	106813720	106813720	+	Silent	SNP	A	A	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_012082	exon8	c.A1410T	p.I470I	AAAAATAAAGTCT	.	87.0	20.0	62.0	0.0	.	.	.	Atlas-SNP
ALPI	248	hgsc.bcm.edu	37	2	233321406	233321406	+	Splice_Site	SNP	G	G	A	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_001631	exon3	c.300+1G>A	.	TCCAAGGTAAGGG	.	89.0	17.0	110.0	0.0	.	.	.	Atlas-SNP
ZNF181	339318	hgsc.bcm.edu	37	19	35232200	35232200	+	Missense_Mutation	SNP	T	T	G	rs143797666		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	ZNF181,NS,carcinoma,0,5	ZNF181	NM_001029997	exon4	c.T914G	p.V305G	GCCATGTCTCATC	.	119.0	6.0	109.0	2.0	.	0	5	Atlas-SNP
ATP2B1	490	hgsc.bcm.edu	37	12	90018056	90018056	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	ATP2B1_ENST00000359142,NS,carcinoma,-1,2	ATP2B1_ENST00000359142	NM_001001323	exon8	c.T1248C	p.F416F	CTTCACAAAGTAT	.	247.0	30.0	205.0	0.0	.	-1	2	Atlas-SNP
FAM182B	728882	hgsc.bcm.edu	37	20	25755519	25755519	+	RNA	SNP	T	T	G	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	.	.	.	.	CCACCATGCTGCC	.	63.0	7.0	65.0	0.0	.	.	.	Atlas-SNP
CYP17A1	1586	hgsc.bcm.edu	37	10	104593813	104593813	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_000102	exon4	c.A733T	p.K245X	GTATTTTATTCAG	.	154.0	35.0	94.0	0.0	.	.	.	Atlas-SNP
GPR114	221188	hgsc.bcm.edu	37	16	57600650	57600650	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_153837	exon7	c.T686C	p.F229S	CCTACTTTGCTGT	.	27.0	6.0	33.0	0.0	.	.	.	Atlas-SNP
DVL1	1855	hgsc.bcm.edu	37	1	1273785	1273785	+	Silent	SNP	G	G	A	rs151161721		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_004421	exon13	c.C1296T	p.H432H	CTCCACGTGTGTG	.	83.0	12.0	47.0	0.0	0.000	.	.	Atlas-SNP
TELO2	9894	hgsc.bcm.edu	37	16	1552339	1552339	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_016111	exon13	c.G1587T	p.E529D	CATAGAGCGCTGG	.	56.0	9.0	74.0	0.0	.	.	.	Atlas-SNP
CXorf64	100130613	hgsc.bcm.edu	37	X	125954748	125954748	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_001122716	exon2	c.G127A	p.D43N	CCAGAGGATGACG	.	161.0	51.0	162.0	0.0	.	.	.	Atlas-SNP
SI	6476	hgsc.bcm.edu	37	3	164709984	164709984	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_001041	exon43	c.G4964T	p.R1655L	AACCACCGAGCAT	.	259.0	32.0	185.0	0.0	.	.	.	Atlas-SNP
IL4I1	259307	hgsc.bcm.edu	37	19	50399126	50399126	+	Silent	SNP	G	G	A	rs138779872	bycluster	TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_172374	exon5	c.C264T	p.G88G	ACCAGCGCCAACC	.	64.0	9.0	76.0	0.0	0.000	.	.	Atlas-SNP
BRWD3	254065	hgsc.bcm.edu	37	X	79959062	79959062	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_153252	exon24	c.C2752A	p.P918T	CATTAGGCTCACC	.	486.0	134.0	361.0	0.0	.	.	.	Atlas-SNP
