Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
KIAA0040	9674	hgsc.bcm.edu	37	1	175129933	175129934	+	Frame_Shift_Ins	INS	-	-	CATC	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	KIAA0040,colon,carcinoma,0,1	KIAA0040	NM_001162893	exon5	c.217_218insGATG	p.K73fs	.	.	91.0	11.0	73.0	0.0	.	2	.	Atlas-Indel
KANSL1L	151050	hgsc.bcm.edu	37	2	211018586	211018588	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	TTC	TTC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_152519	exon2	c.720_722del	p.240_241del	.	.	105.0	20.0	109.0	0.0	.	.	.	Pindel,Atlas-Indel
NEFH	4744	hgsc.bcm.edu	37	22	29885591	29885592	+	In_Frame_Ins	INS	-	-	CCTGAGAAGGCCAAGTCC	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.,2	NEFH	NM_021076	exon4	c.1962_1963insCCTGAGAAGGCCAAGTCC	p.S654delinsSPEKAKS	.	.	168.0	65.0	150.0	0.0	.	178	.	Atlas-Indel
CMC4	100272147	hgsc.bcm.edu	37	X	154292244	154292247	+	Frame_Shift_Del	DEL	GTAA	GTAA	-	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	GTAA	GTAA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_001018024	exon2	c.53_56del	p.18_19del	.	.	252.0	92.0	198.0	0.0	.	.	.	Pindel
NR1H2	7376	hgsc.bcm.edu	37	19	50881822	50881822	+	Silent	SNP	A	A	G	rs61751954	bycluster	TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_007121	exon6	c.A516G	p.K172K	TCGGAAACAGCAG	.	70.0	5.0	81.0	0.0	.	.	.	Atlas-SNP
GAL	51083	hgsc.bcm.edu	37	11	68455486	68455486	+	Silent	SNP	C	C	T	rs367644530		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_015973	exon4	c.C141T	p.A47A	AGATGCCGTTGGC	.	173.0	10.0	220.0	0.0	.	.	.	Atlas-SNP
LACTB	114294	hgsc.bcm.edu	37	15	63414877	63414877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_171846	exon2	c.G400A	p.D134N	TCTGTAGATGGAA	.	135.0	30.0	165.0	0.0	.	.	.	Atlas-SNP
MAB21L1	4081	hgsc.bcm.edu	37	13	36050493	36050493	+	RNA	SNP	T	T	G	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	.	.	.	.	GCTGCTTTTCCCT	.	80.0	4.0	95.0	0.0	.	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179499171	179499171	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_001267550	exon230	c.G42337T	p.D14113Y	GAGAATCATTAAT	.	109.0	22.0	78.0	0.0	.	.	.	Atlas-SNP
SBNO1	55206	hgsc.bcm.edu	37	12	123830101	123830101	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_001167856	exon3	c.C254G	p.T85S	GTTGTAGTAGATG	.	81.0	21.0	92.0	0.0	.	.	.	Atlas-SNP
SACS	26278	hgsc.bcm.edu	37	13	23906199	23906199	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_014363	exon10	c.G11816C	p.G3939A	TGCACACCAATAT	.	108.0	50.0	123.0	0.0	.	.	.	Atlas-SNP
MIR1297	100302187	hgsc.bcm.edu	37	13	54886174	54886174	+	RNA	SNP	G	G	C	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	.	.	.	.	ACCCTAGAGATAA	.	237.0	72.0	286.0	0.0	.	.	.	Atlas-SNP
DNAJC28	54943	hgsc.bcm.edu	37	21	34860757	34860757	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_001040192	exon2	c.A944T	p.N315I	ATTAAATTAAAAT	.	274.0	15.0	200.0	0.0	.	.	.	Atlas-SNP
HORMAD1	84072	hgsc.bcm.edu	37	1	150675839	150675839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_032132	exon13	c.C979T	p.L327F	TATCAAGTTCAGA	.	107.0	29.0	97.0	0.0	.	.	.	Atlas-SNP
DSPP	1834	hgsc.bcm.edu	37	4	88537501	88537501	+	Silent	SNP	T	T	C	rs112404065		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_014208	exon5	c.T3687C	p.S1229S	CAGCAGTGACAGC	.	172.0	12.0	147.0	0.0	1.000	.	.	Atlas-SNP
RPTOR	57521	hgsc.bcm.edu	37	17	78921151	78921151	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_020761	exon27	c.G3265T	p.D1089Y	GCCACAGGTGAGC	.	90.0	4.0	86.0	0.0	.	.	.	Atlas-SNP
