Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
ZNF609	23060	hgsc.bcm.edu	37	15	64967246	64967247	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	ZNF609	NM_015042	exon4	c.2193_2194insA	p.D731fs	.	.	43.0	11.0	64.0	0.0	.	106	.	Pindel,Atlas-Indel
CAMKK1	84254	hgsc.bcm.edu	37	17	3779556	3779556	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	CAMKK1_ENST00000158166,colon,carcinoma,0,2	CAMKK1	NM_172207	exon11	c.1072delG	p.E358fs	.	.	96.0	25.0	108.0	0.0	.	70	.	Pindel,Atlas-Indel
MUC16	94025	hgsc.bcm.edu	37	19	9086806	9086808	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	MUC16	NM_024690	exon1	c.5008_5010del	p.1670_1670del	.	.	101.0	15.0	140.0	0.0	.	4315	.	Atlas-Indel
SMURF1	57154	hgsc.bcm.edu	37	7	98628279	98628280	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	SMURF1	NM_020429	exon19	c.2202_2203del	p.734_735del	.	.	48.0	11.0	95.0	0.0	.	58	.	Pindel,Atlas-Indel
AKAP9	10142	hgsc.bcm.edu	37	7	91691612	91691612	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	AKAP9	NM_147185	exon24	c.5788delG	p.E1930fs	.	.	183.0	29.0	291.0	0.0	.	788	.	Atlas-Indel
ACIN1	22985	hgsc.bcm.edu	37	14	23548787	23548787	+	Missense_Mutation	SNP	C	C	T	rs61741619	bycluster;byfrequency	TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_001164814	exon6	c.G1931A	p.R644H	CGAGAACGTGAAC	.	165.0	18.0	169.0	0.0	0.015	.	.	Atlas-SNP
TYK2	7297	hgsc.bcm.edu	37	19	10488908	10488908	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_003331	exon3	c.C175T	p.H59Y	CAATGTGGATGCA	.	88.0	17.0	89.0	0.0	.	.	.	Atlas-SNP
SLC25A46	91137	hgsc.bcm.edu	37	5	110097196	110097196	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_138773	exon8	c.G971A	p.S324N	CTGCCAGTCTTTG	.	83.0	24.0	129.0	0.0	.	.	.	Atlas-SNP
GEMIN5	25929	hgsc.bcm.edu	37	5	154268931	154268931	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_015465	exon27	c.A4309G	p.R1437G	TAAGCCTTTTGGT	.	99.0	4.0	141.0	0.0	.	.	.	Atlas-SNP
ATP1A4	480	hgsc.bcm.edu	37	1	160151732	160151732	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_144699	exon20	c.A2880G	p.L960L	AGTCTTAATATTT	.	114.0	58.0	128.0	0.0	.	.	.	Atlas-SNP
PCDHB7	56129	hgsc.bcm.edu	37	5	140553994	140553994	+	Silent	SNP	G	G	T	rs374392843		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	PCDHB7,NS,carcinoma,0,4	PCDHB7	NM_018940	exon1	c.G1578T	p.A526A	GCAGGCGTTCGAG	.	44.0	3.0	70.0	1.0	.	0	4	Atlas-SNP
TNS3	64759	hgsc.bcm.edu	37	7	47343091	47343091	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_022748	exon22	c.A2914T	p.S972C	CAGCGCTGAGGGG	.	37.0	5.0	42.0	0.0	.	.	.	Atlas-SNP
POTEC	388468	hgsc.bcm.edu	37	18	14542810	14542810	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	POTEC,NS,carcinoma,0,1	POTEC	NM_001137671	exon1	c.C336T	p.S112S	CTTGCCGCTCCCC	.	245.0	21.0	481.0	0.0	.	0	1	Atlas-SNP
CDR1	1038	hgsc.bcm.edu	37	X	139866052	139866052	+	Silent	SNP	G	G	A	rs146276960		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_004065	exon1	c.C480T	p.S160S	TCTTCCGGATAAT	.	423.0	108.0	349.0	0.0	0.000	.	.	Atlas-SNP
GXYLT1	283464	hgsc.bcm.edu	37	12	42481670	42481670	+	Missense_Mutation	SNP	C	C	T	rs200973030	bycluster	TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	Q8IXV1_HUMAN,NS,carcinoma,-1,4	Q8IXV1_HUMAN	NM_173601	exon8	c.G1241A	p.C414Y	TTTCCACAGTATG	.	76.0	4.0	96.0	1.0	.	-1	4	Atlas-SNP
PIK3C2B	5287	hgsc.bcm.edu	37	1	204403713	204403713	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_002646	exon25	c.C3540T	p.S1180S	AGCGCAGGAGTAG	.	105.0	21.0	145.0	0.0	.	.	.	Atlas-SNP
GXYLT1	283464	hgsc.bcm.edu	37	12	42481671	42481671	+	Missense_Mutation	SNP	A	A	G	rs202200134	bycluster	TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	Q8IXV1_HUMAN,NS,carcinoma,0,4	Q8IXV1_HUMAN	NM_173601	exon8	c.T1240C	p.C414R	TTCCACAGTATGT	.	74.0	4.0	95.0	1.0	.	0	4	Atlas-SNP
ZNF814	730051	hgsc.bcm.edu	37	19	58385790	58385790	+	Missense_Mutation	SNP	G	G	T	rs111727691	bycluster	TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_001144989	exon3	c.C968A	p.P323H	TCATAAGGTCTTT	.	101.0	10.0	143.0	0.0	0.500	.	.	Atlas-SNP
FOXA1	3169	hgsc.bcm.edu	37	14	38064138	38064138	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_004496	exon1	c.G40C	p.D14H	TCCAGTCGCTGGT	.	79.0	8.0	106.0	0.0	.	.	.	Atlas-SNP
TPST1	8460	hgsc.bcm.edu	37	7	65705578	65705578	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_003596	exon2	c.G166T	p.D56Y	GGCCTGGACCTCA	.	140.0	20.0	133.0	0.0	.	.	.	Atlas-SNP
ZNF814	730051	hgsc.bcm.edu	37	19	58385793	58385793	+	Missense_Mutation	SNP	C	C	T	rs113623532	bycluster	TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_001144989	exon3	c.G965A	p.R322K	TAAGGTCTTTTCC	.	100.0	10.0	140.0	0.0	0.500	.	.	Atlas-SNP
MAP3K10	4294	hgsc.bcm.edu	37	19	40711055	40711055	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_002446	exon4	c.G1040T	p.R347L	ACGGGCGGCCAGA	.	105.0	5.0	154.0	0.0	.	.	.	Atlas-SNP
PCDH7	5099	hgsc.bcm.edu	37	4	30725848	30725848	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_032457	exon1	c.A2804G	p.K935R	AGCCTAAAAAGGA	.	57.0	21.0	81.0	0.0	.	.	.	Atlas-SNP
CCDC54	84692	hgsc.bcm.edu	37	3	107097048	107097048	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_032600	exon1	c.C614T	p.T205I	AGTCCACTGACCA	.	311.0	112.0	394.0	0.0	.	.	.	Atlas-SNP
ANKRD50	57182	hgsc.bcm.edu	37	4	125631497	125631497	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_020337	exon2	c.C170T	p.S57F	TTCCCAGAATTCA	.	161.0	38.0	281.0	0.0	.	.	.	Atlas-SNP
CCPG1	9236	hgsc.bcm.edu	37	15	55669303	55669303	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_020739	exon5	c.G298T	p.A100S	CACTGGCAGTTCC	.	150.0	10.0	240.0	0.0	.	.	.	Atlas-SNP
S1PR5	53637	hgsc.bcm.edu	37	19	10624996	10624996	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_030760	exon2	c.G692A	p.G231E	GCAGTCCCGGGCC	.	41.0	20.0	40.0	0.0	.	.	.	Atlas-SNP
