Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
OGFOD3	79701	hgsc.bcm.edu	37	17	80350394	80350396	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	GAA	GAA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_024648	exon9	c.839_841del	p.280_281del	.	.	109.0	14.0	92.0	0.0	.	.	.	Atlas-Indel
TREML2	79865	hgsc.bcm.edu	37	6	41166123	41166123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_024807	exon2	c.G100A	p.G34R	TCTCCCCTTCAAG	.	57.0	4.0	63.0	0.0	.	.	.	Atlas-SNP
NCOA6	23054	hgsc.bcm.edu	37	20	33345756	33345756	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	NCOA6,bladder,carcinoma,0,2	NCOA6	NM_014071	exon7	c.A795G	p.Q265Q	TTGTTGTTGCTGC	.	68.0	3.0	61.0	0.0	.	0	2	Atlas-SNP
GYG2P1	352887	hgsc.bcm.edu	37	Y	14532067	14532067	+	RNA	SNP	T	T	A	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	.	.	.	.	CACCCATGCCAGT	.	60.0	7.0	66.0	0.0	.	.	.	Atlas-SNP
LRRC37A3	374819	hgsc.bcm.edu	37	17	62892947	62892947	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_199340	exon3	c.C429T	p.L143L	AACAGGGAGCCTT	.	695.0	53.0	643.0	0.0	.	.	.	Atlas-SNP
RP1L1	94137	hgsc.bcm.edu	37	8	10466010	10466010	+	Missense_Mutation	SNP	C	C	A	rs181718385	bycluster;byfrequency	TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	RP1L1,NS,malignant_melanoma,0,1	RP1L1	NM_178857	exon4	c.G5598T	p.E1866D	CTGGGCCTCCCCT	.	54.0	12.0	44.0	0.0	0.008	0	1	Atlas-SNP
KIAA0040	9674	hgsc.bcm.edu	37	1	175129924	175129924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_001162895	exon3	c.G226A	p.D76N	CTTCATCCTTCTT	.	63.0	7.0	84.0	0.0	.	.	.	Atlas-SNP
RP1L1	94137	hgsc.bcm.edu	37	8	10466019	10466019	+	Silent	SNP	A	A	T	rs199577777	byfrequency	TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	RP1L1,NS,carcinoma,-1,1	RP1L1	NM_178857	exon4	c.T5589A	p.A1863A	CCCTTCAGCCTCC	.	51.0	12.0	43.0	0.0	0.007	-1	1	Atlas-SNP
FAM108A1	81926	hgsc.bcm.edu	37	19	1881395	1881395	+	Silent	SNP	T	T	C	rs199929215	byfrequency	TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	FAM108A1,NS,carcinoma,0,3	FAM108A1	NM_031213	exon2	c.A171G	p.R57R	GGAGGCTCTCAGG	.	14.0	5.0	14.0	1.0	0.010	0	3	Atlas-SNP
HTR1E	3354	hgsc.bcm.edu	37	6	87725676	87725676	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	HTR1E,NS,carcinoma,+1,4	HTR1E	NM_000865	exon2	c.G624T	p.A208A	CCACGCGGCCAAG	.	98.0	4.0	118.0	0.0	.	+1	4	Atlas-SNP
CLK3	1198	hgsc.bcm.edu	37	15	74911680	74911680	+	Missense_Mutation	SNP	G	G	T	rs183588535	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_001130028	exon2	c.G587T	p.R196L	GATCTCGGTCCAG	.	80.0	4.0	87.0	0.0	.	.	.	Atlas-SNP
ZNF814	730051	hgsc.bcm.edu	37	19	58388393	58388393	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_001144989	exon2	c.A54G	p.E18E	CACATCTTCAAAA	.	98.0	5.0	140.0	0.0	.	.	.	Atlas-SNP
TREML2	79865	hgsc.bcm.edu	37	6	41166095	41166095	+	Missense_Mutation	SNP	T	T	C	rs141238140		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_024807	exon2	c.A128G	p.Y43C	CCCTTATAGGAGC	.	56.0	4.0	65.0	0.0	.	.	.	Atlas-SNP
TUBB8	347688	hgsc.bcm.edu	37	10	93797	93797	+	Missense_Mutation	SNP	C	C	T	rs71485064		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	TUBB8,NS,carcinoma,0,1	TUBB8	NM_177987	exon4	c.G535A	p.V179M	CCACCACGGTGTC	.	104.0	7.0	131.0	2.0	1.000	0	1	Atlas-SNP
