Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
CHERP	10523	hgsc.bcm.edu	37	19	16636107	16636107	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_006387	exon10	c.G1687A	p.E563K	GCCGCTCGAAGGG	.	85.0	14.0	75.0	0.0	.	.	.	Atlas-SNP
CREB5	9586	hgsc.bcm.edu	37	7	28547354	28547354	+	Missense_Mutation	SNP	G	G	A	rs142741982	alternate_allele	TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	CREB5,rectum,carcinoma,+1,1	CREB5	NM_182898	exon4	c.G290A	p.R97Q	GCAAGCGGGTAGG	.	71.0	11.0	91.0	0.0	0.000	+1	1	Atlas-SNP
VWC2	375567	hgsc.bcm.edu	37	7	49815586	49815586	+	Silent	SNP	G	G	C	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_198570	exon2	c.G555C	p.P185P	GGGGCCGCTGTGC	.	22.0	5.0	16.0	0.0	.	.	.	Atlas-SNP
KREMEN1	83999	hgsc.bcm.edu	37	22	29521294	29521294	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_001039570	exon5	c.A521G	p.N174S	GAAACAATCCTGA	.	80.0	17.0	116.0	0.0	.	.	.	Atlas-SNP
BTN2A2	10385	hgsc.bcm.edu	37	6	26384092	26384092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	BTN2A2_ENST00000432533,bladder,carcinoma,-1,2	BTN2A2_ENST00000432533	NM_181531	exon2	c.C43T	p.L15F	GCCTCCCTCCTCC	.	98.0	5.0	91.0	1.0	.	-1	2	Atlas-SNP
PRKAA2	5563	hgsc.bcm.edu	37	1	57111084	57111084	+	Missense_Mutation	SNP	C	C	A	rs200643979	by1000genomes;alternate_allele	TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_006252	exon1	c.C24A	p.D8E	GCACGACGGGCGG	.	109.0	9.0	100.0	0.0	.	.	.	Atlas-SNP
ANKS6	203286	hgsc.bcm.edu	37	9	101546298	101546298	+	Missense_Mutation	SNP	G	G	T	rs376042242	alternate_allele	TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	ANKS6,NS,carcinoma,-1,1	ANKS6	NM_173551	exon4	c.C1049A	p.A350E	ACATCCGCGTGCC	.	49.0	2.0	61.0	0.0	.	-1	1	Atlas-SNP
HN1L	90861	hgsc.bcm.edu	37	16	1748931	1748931	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	HN1L,NS,carcinoma,-1,1	HN1L	NM_144570	exon5	c.C505G	p.P169A	CTGGGGCCGCGGC	.	61.0	8.0	55.0	0.0	.	-1	1	Atlas-SNP
KATNAL2	83473	hgsc.bcm.edu	37	18	44584611	44584611	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_031303	exon4	c.T122C	p.M41T	GGATGATGAACGA	.	81.0	13.0	103.0	0.0	.	.	.	Atlas-SNP
SCN7A	6332	hgsc.bcm.edu	37	2	167313390	167313390	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_002976	exon10	c.A1280T	p.E427V	TCTGTTTCATTTC	.	59.0	11.0	82.0	0.0	.	.	.	Atlas-SNP
TNFAIP3	7128	hgsc.bcm.edu	37	6	138200293	138200293	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	TNFAIP3,rectum,carcinoma,-1,2	TNFAIP3	NM_001270507	exon7	c.G1711C	p.V571L	CGGCTCGTCCGGA	.	52.0	9.0	65.0	2.0	.	-1	2	Atlas-SNP
ARID4A	5926	hgsc.bcm.edu	37	14	58832861	58832861	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	ARID4A_ENST00000355431,NS,carcinoma,-2,2	ARID4A_ENST00000355431	NM_002892	exon22	c.C3436G	p.P1146A	ATATCCCCGCACA	.	152.0	31.0	172.0	0.0	.	-2	2	Atlas-SNP
LRRK1	79705	hgsc.bcm.edu	37	15	101555582	101555582	+	Silent	SNP	T	T	A	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_024652	exon12	c.T1584A	p.G528G	CAGAGGTCGCCAG	.	83.0	20.0	107.0	0.0	.	.	.	Atlas-SNP
ZMYND8	23613	hgsc.bcm.edu	37	20	45874864	45874864	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_183047	exon14	c.C2172T	p.G724G	GTCCAGGCCCAAA	.	184.0	32.0	211.0	0.0	.	.	.	Atlas-SNP
CHDC2	286464	hgsc.bcm.edu	37	X	36091305	36091305	+	Silent	SNP	A	A	C	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_173695	exon4	c.A240C	p.S80S	AACATCAGAGGAA	.	363.0	177.0	288.0	1.0	.	.	.	Atlas-SNP
SLC6A19	340024	hgsc.bcm.edu	37	5	1216727	1216727	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	SLC6A19,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1	SLC6A19	NM_001003841	exon7	c.G942T	p.S314S	CACATCGGTGTAT	.	82.0	4.0	124.0	0.0	.	0	1	Atlas-SNP
NKAPL	222698	hgsc.bcm.edu	37	6	28228082	28228082	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	NKAPL,NS,carcinoma,0,1	NKAPL	NM_001007531	exon1	c.T933C	p.Y311Y	TGAGTATGTAAAA	.	113.0	11.0	115.0	0.0	.	0	1	Atlas-SNP
LPAR5	57121	hgsc.bcm.edu	37	12	6729744	6729744	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_001142961	exon2	c.C671A	p.T224K	CTCTGCGTGGCGT	.	108.0	11.0	58.0	0.0	.	.	.	Atlas-SNP
DENND4B	9909	hgsc.bcm.edu	37	1	153907287	153907287	+	Missense_Mutation	SNP	G	G	C	rs199597671		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_014856	exon18	c.C2722G	p.Q908E	GCTGCTGCTGCTG	.	45.0	5.0	45.0	0.0	.	.	.	Atlas-SNP
LPHN1	22859	hgsc.bcm.edu	37	19	14273727	14273727	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_001008701	exon6	c.C901T	p.R301C	CAAAGCGCAGTGT	.	63.0	12.0	70.0	0.0	.	.	.	Atlas-SNP
ZNF555	148254	hgsc.bcm.edu	37	19	2853172	2853172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_152791	exon4	c.G1109A	p.C370Y	ACGAATGCAAACA	.	115.0	12.0	183.0	0.0	.	.	.	Atlas-SNP
RNF126P1	376412	hgsc.bcm.edu	37	17	55123140	55123140	+	RNA	SNP	A	A	C	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	.	.	.	.	TCTTTGACGACAG	.	48.0	7.0	40.0	0.0	.	.	.	Atlas-SNP
ADAMTS20	80070	hgsc.bcm.edu	37	12	43771347	43771347	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_025003	exon32	c.T4816C	p.F1606L	AACTAAATCCACA	.	133.0	23.0	183.0	0.0	.	.	.	Atlas-SNP
SMARCAL1	50485	hgsc.bcm.edu	37	2	217329366	217329366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_014140	exon13	c.C2117T	p.A706V	GAACAGCTGAAGC	.	68.0	10.0	70.0	0.0	.	.	.	Atlas-SNP
