Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
PHLDA3	23612	hgsc.bcm.edu	37	1	201437676	201437676	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	PHLDA3,colon,carcinoma,0,1	PHLDA3	NM_012396	exon1	c.240delC	p.G80fs	.	.	240.0	40.0	290.0	0.0	.	11	.	Pindel,Atlas-Indel
FKBP14	55033	hgsc.bcm.edu	37	7	30058694	30058696	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	AGG	AGG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	FKBP14	NM_017946	exon3	c.394_396del	p.132_132del	.	.	155.0	24.0	65.0	0.0	.	18	.	Atlas-Indel
MIR548T	100422849	hgsc.bcm.edu	37	7	148028714	148028714	+	RNA	SNP	C	C	G	rs62470610		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	.	.	.	.	TGGAGTCGATGGA	.	8.0	5.0	11.0	0.0	.	.	.	Atlas-SNP
COL14A1	7373	hgsc.bcm.edu	37	8	121220569	121220569	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_021110	exon11	c.T1290C	p.A430A	CACTGCTAGTGAA	.	88.0	13.0	45.0	0.0	.	.	.	Atlas-SNP
KRT1	3848	hgsc.bcm.edu	37	12	53069229	53069229	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_006121	exon9	c.C1683T	p.S561S	ACCTCCGGAGCCG	.	40.0	5.0	29.0	0.0	.	.	.	Atlas-SNP
HERC2P10	390561	hgsc.bcm.edu	37	15	31117040	31117040	+	RNA	SNP	C	C	A	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	.	.	.	.	AAATTACCAAATG	.	28.0	13.0	24.0	0.0	.	.	.	Atlas-SNP
MYO5A	4644	hgsc.bcm.edu	37	15	52662553	52662553	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_000259	exon22	c.A2879G	p.E960G	TCAGTCTCAGAGT	.	95.0	4.0	101.0	0.0	.	.	.	Atlas-SNP
EBF3	253738	hgsc.bcm.edu	37	10	131676058	131676058	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_001005463	exon7	c.A610C	p.N204H	GAGGGTTGCCTGC	.	72.0	6.0	46.0	0.0	.	.	.	Atlas-SNP
RTTN	25914	hgsc.bcm.edu	37	18	67755229	67755229	+	Missense_Mutation	SNP	C	C	T	rs75356692	bycluster;by1000genomes	TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	RTTN,NS,carcinoma,-1,1	RTTN	NM_173630	exon31	c.G4298A	p.R1433Q	ACCTCCCGGCGCA	.	71.0	3.0	79.0	0.0	0.001	-1	1	Atlas-SNP
MED1	5469	hgsc.bcm.edu	37	17	37604156	37604156	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_004774	exon2	c.G27C	p.E9D	TTCTGACTCTATG	.	121.0	40.0	58.0	0.0	.	.	.	Atlas-SNP
KRT1	3848	hgsc.bcm.edu	37	12	53069243	53069243	+	Missense_Mutation	SNP	T	T	C	rs77846840	bycluster	TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_006121	exon9	c.A1669G	p.S557G	AGCTGCTACCTCC	.	39.0	15.0	27.0	0.0	0.500	.	.	Atlas-SNP
CIC	23152	hgsc.bcm.edu	37	19	42796253	42796253	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_015125	exon12	c.C2902G	p.P968A	CTGACCCCGGTGC	.	67.0	19.0	128.0	0.0	.	.	.	Atlas-SNP
TRAPPC11	60684	hgsc.bcm.edu	37	4	184589238	184589238	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	C4orf41,NS,carcinoma,0,1	C4orf41	NM_021942	exon5	c.G528A	p.P176P	ACTGCCGCACACT	.	100.0	5.0	78.0	1.0	.	0	1	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	37	7	100680473	100680473	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_001040105	exon3	c.C5776A	p.P1926T	GGAAGGCCTCCAT	.	87.0	7.0	80.0	0.0	.	.	.	Atlas-SNP
ERO1LB	56605	hgsc.bcm.edu	37	1	236389708	236389708	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_019891	exon12	c.T913G	p.F305V	ATAAAAAGTAAAG	.	226.0	70.0	164.0	0.0	.	.	.	Atlas-SNP
