Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
RPLP0	6175	hgsc.bcm.edu	37	12	120634676	120634690	+	In_Frame_Del	DEL	GTGGCAGCAGCCACA	GTGGCAGCAGCCACA	-	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	GTGGCAGCAGCCACA	GTGGCAGCAGCCACA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	RPLP0	NM_053275	exon8	c.841_855del	p.281_285del	.	.	211.0	59.0	225.0	0.0	.	27	.	Atlas-Indel
PLEKHA3	65977	hgsc.bcm.edu	37	2	179355457	179355467	+	Frame_Shift_Del	DEL	AATGCAGCTGA	AATGCAGCTGA	-	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	AATGCAGCTGA	AATGCAGCTGA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	PLEKHA3	NM_019091	exon3	c.228_238del	p.76_80del	.	.	160.0	32.0	228.0	0.0	.	25	.	Pindel,Atlas-Indel
HSP90AB1	3326	hgsc.bcm.edu	37	6	44218796	44218798	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	HSP90AB1	NM_001271969	exon7	c.968_970del	p.323_324del	.	.	110.0	31.0	95.0	0.0	.	83	.	Pindel,Atlas-Indel
AIDA	64853	hgsc.bcm.edu	37	1	222849452	222849454	+	In_Frame_Del	DEL	GTA	GTA	-	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	GTA	GTA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	AIDA	NM_022831	exon7	c.568_570del	p.190_190del	.	.	251.0	55.0	280.0	0.0	.	23	.	Pindel,Atlas-Indel
RPGRIP1	57096	hgsc.bcm.edu	37	14	21798426	21798426	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_020366	exon19	c.T3118C	p.W1040R	ACTGAGTGGAAGT	.	35.0	16.0	50.0	0.0	.	.	.	Atlas-SNP
MACROD2	140733	hgsc.bcm.edu	37	20	13982939	13982939	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_080676	exon2	c.T52G	p.L18V	GAACGTTTATTGA	.	76.0	15.0	72.0	0.0	.	.	.	Atlas-SNP
OR2J3	442186	hgsc.bcm.edu	37	6	29079992	29079992	+	Missense_Mutation	SNP	G	G	A	rs201612570	bycluster;byfrequency	TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_001005216	exon1	c.G325A	p.A109T	GTTCTCGCACTGG	.	121.0	8.0	158.0	0.0	0.013	.	.	Atlas-SNP
SLC5A4	6527	hgsc.bcm.edu	37	22	32628901	32628901	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_014227	exon9	c.C1006T	p.R336C	GGATGCGGCTGAT	.	144.0	51.0	159.0	0.0	.	.	.	Atlas-SNP
PPP1R14D	54866	hgsc.bcm.edu	37	15	41108371	41108371	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_001130143	exon3	c.G452A	p.W151X	TACCTCCAGCTGA	.	68.0	26.0	89.0	0.0	.	.	.	Atlas-SNP
ATAD2B	54454	hgsc.bcm.edu	37	2	24080341	24080341	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_001242338	exon13	c.T1512G	p.F504L	TTCATCAAAAAAT	.	437.0	134.0	371.0	0.0	.	.	.	Atlas-SNP
TRIM44	54765	hgsc.bcm.edu	37	11	35684815	35684815	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_017583	exon1	c.C156A	p.F52L	GAAGTTCCTCAGT	.	51.0	17.0	44.0	0.0	.	.	.	Atlas-SNP
ILDR2	387597	hgsc.bcm.edu	37	1	166904678	166904678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_199351	exon6	c.C740T	p.P247L	GAGGGAGGGTACC	.	68.0	18.0	74.0	0.0	.	.	.	Atlas-SNP
TGFBR3	7049	hgsc.bcm.edu	37	1	92163669	92163669	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_003243	exon15	c.A2306G	p.K769R	GGTTCCTTCATGC	.	87.0	4.0	122.0	0.0	.	.	.	Atlas-SNP
OBSL1	23363	hgsc.bcm.edu	37	2	220416900	220416900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	OBSL1_ENST00000404537,NS,carcinoma,0,1	OBSL1_ENST00000404537	NM_015311	exon19	c.G5347A	p.E1783K	CGTCCTCGGCGCG	.	187.0	76.0	239.0	0.0	.	0	1	Atlas-SNP
ZNF772	400720	hgsc.bcm.edu	37	19	57984888	57984888	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_001024596	exon5	c.C1224A	p.C408X	TGCGATGCACTCA	.	65.0	15.0	88.0	0.0	.	.	.	Atlas-SNP
RNR1	6052	hgsc.bcm.edu	37	MT	983	983	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	.	.	.	.	AACTCACCTGAGT	.	20.0	12.0	39.0	0.0	.	.	.	Atlas-SNP
TAB3	257397	hgsc.bcm.edu	37	X	30870899	30870899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_152787	exon7	c.C1706T	p.P569L	ACCGTAGGGATCG	.	60.0	9.0	40.0	0.0	.	.	.	Atlas-SNP
OR6A2	8590	hgsc.bcm.edu	37	11	6816325	6816325	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_003696	exon1	c.C615T	p.F205F	CAGGATGAAATCT	.	56.0	29.0	42.0	0.0	.	.	.	Atlas-SNP
HORMAD1	84072	hgsc.bcm.edu	37	1	150680868	150680868	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_032132	exon9	c.C411T	p.N137N	AGATTCGTTGCTT	.	87.0	37.0	105.0	0.0	.	.	.	Atlas-SNP
GRIA4	2893	hgsc.bcm.edu	37	11	105797664	105797664	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_001077243	exon13	c.G2045C	p.R682T	TCTTCAGAGTAAG	.	88.0	27.0	96.0	0.0	.	.	.	Atlas-SNP
DAK	26007	hgsc.bcm.edu	37	11	61111415	61111415	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_015533	exon12	c.C1070A	p.P357H	CCGAGCCCCAGGA	.	32.0	15.0	25.0	0.0	.	.	.	Atlas-SNP
