Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
AR	367	hgsc.bcm.edu	37	X	66765198	66765199	+	Frame_Shift_Ins	INS	-	-	A	rs71905623	alternate_allele	TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	AR	NM_000044	exon1	c.210_211insA	p.Q70fs	.	.	74.0	19.0	37.0	0.0	.	249	.	Atlas-Indel
AR	367	hgsc.bcm.edu	37	X	66765199	66765200	+	Frame_Shift_Ins	INS	-	-	T	rs71905623	alternate_allele	TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	AR	NM_000044	exon1	c.211_212insT	p.Q71fs	.	.	72.0	18.0	37.0	0.0	.	249	.	Atlas-Indel
AR	367	hgsc.bcm.edu	37	X	66765208	66765209	+	Frame_Shift_Del	DEL	CA	CA	-	rs71905623	alternate_allele	TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	AR	NM_000044	exon1	c.219_220del	p.73_74del	.	.	83.0	11.0	41.0	0.0	.	249	.	Atlas-Indel
SMPD4	55627	hgsc.bcm.edu	37	2	130910391	130910391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_017951	exon20	c.C2338T	p.L780F	CTGTGAGGTGGTA	.	73.0	25.0	58.0	0.0	.	.	.	Atlas-SNP
CDC27	996	hgsc.bcm.edu	37	17	45232075	45232075	+	Missense_Mutation	SNP	A	A	T	rs199711781	bycluster	TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	CDC27_ENST00000531206,NS,carcinoma,0,2	CDC27_ENST00000531206	NM_001114091	exon8	c.T920A	p.V307E	TCAATTACAGGAG	.	46.0	5.0	55.0	1.0	0.001	0	2	Atlas-SNP
ZZEF1	23140	hgsc.bcm.edu	37	17	3937397	3937397	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_015113	exon40	c.C6496A	p.L2166M	CAAACAGGTTGTG	.	150.0	15.0	124.0	0.0	.	.	.	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	37	8	3216723	3216723	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_033225	exon21	c.C3255T	p.C1085C	ACCCAGGCAGGTA	.	102.0	30.0	94.0	0.0	.	.	.	Atlas-SNP
KRT1	3848	hgsc.bcm.edu	37	12	53069243	53069243	+	Missense_Mutation	SNP	T	T	C	rs77846840	bycluster	TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_006121	exon9	c.A1669G	p.S557G	AGCTGCTACCTCC	.	38.0	12.0	23.0	0.0	0.500	.	.	Atlas-SNP
FAM194B	220081	hgsc.bcm.edu	37	13	46170737	46170737	+	Missense_Mutation	SNP	T	T	C	rs117004691	bycluster	TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_182542	exon3	c.A404G	p.E135G	TCCTCCTCCAGAT	.	135.0	7.0	92.0	0.0	.	.	.	Atlas-SNP
ATN1	1822	hgsc.bcm.edu	37	12	7045897	7045897	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	ATN1,colon,carcinoma,0,1	ATN1	NM_001007026	exon5	c.G1467C	p.Q489H	ACAGCAGCAGCAG	.	133.0	8.0	37.0	0.0	.	0	1	Atlas-SNP
MAGI1	9223	hgsc.bcm.edu	37	3	65425603	65425603	+	Silent	SNP	T	T	C	rs62642828	byfrequency	TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_001033057	exon9	c.A1221G	p.Q407Q	CTGCTGTTGCTGC	.	30.0	13.0	11.0	0.0	0.258	.	.	Atlas-SNP
CPSF1	29894	hgsc.bcm.edu	37	8	145627045	145627045	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_013291	exon3	c.G167A	p.S56N	CCTGTGCTCCTGT	.	177.0	40.0	103.0	0.0	.	.	.	Atlas-SNP
AR	367	hgsc.bcm.edu	37	X	66765196	66765196	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_000044	exon1	c.C208G	p.Q70E	CAGCAGCAGCAGC	.	76.0	27.0	36.0	0.0	.	.	.	Atlas-SNP
