Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
ATXN3	4287	hgsc.bcm.edu	37	14	92537354	92537355	+	In_Frame_Ins	INS	-	-	CTGCTGCTGCTGCTGCTGCTG	rs76478261	alternate_allele	TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	ATXN3,NS,carcinoma,0,7	ATXN3	NM_004993	exon10	c.916_917insCAGCAGCAGCAGCAGCAGCAG	p.G306delinsQQQQQQQG	.	.	61.0	11.0	83.0	0.0	.	46	.	Atlas-Indel
MUC5B	727897	hgsc.bcm.edu	37	11	1272718	1272719	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	MUC5B	NM_002458	exon31	c.14608_14609insC	p.T4870fs	.	.	95.0	10.0	170.0	0.0	.	473	.	Atlas-Indel
MLL3	58508	hgsc.bcm.edu	37	7	151874328	151874328	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	MLL3	NM_170606	exon38	c.8211delT	p.N2737fs	.	.	60.0	12.0	94.0	0.0	.	1564	.	Pindel,Atlas-Indel
TAS1R3	83756	hgsc.bcm.edu	37	1	1267021	1267023	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	TAS1R3	NM_152228	exon2	c.194_196del	p.65_66del	.	.	28.0	12.0	54.0	0.0	.	39	.	Atlas-Indel
ARID5A	10865	hgsc.bcm.edu	37	2	97217882	97217882	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_212481	exon7	c.G1617T	p.L539L	CTTCCTGGCCACC	.	77.0	16.0	69.0	0.0	.	.	.	Atlas-SNP
CLECL1	160365	hgsc.bcm.edu	37	12	9885713	9885713	+	Missense_Mutation	SNP	A	A	T	rs200639830	bycluster	TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_001267701	exon1	c.T148A	p.Y50N	ATAAGTAAATTGA	.	473.0	37.0	163.0	0.0	.	.	.	Atlas-SNP
KIAA1551	55196	hgsc.bcm.edu	37	12	32138197	32138197	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_018169	exon4	c.T4308C	p.S1436S	AGCGAGTTCATCT	.	372.0	154.0	149.0	0.0	.	.	.	Atlas-SNP
SULF1	23213	hgsc.bcm.edu	37	8	70533339	70533339	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_001128205	exon14	c.C1447T	p.L483F	GACCTGCTCACAG	.	164.0	49.0	92.0	0.0	.	.	.	Atlas-SNP
PTMA	5757	hgsc.bcm.edu	37	2	232577559	232577559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	PTMA,NS,carcinoma,0,2	PTMA	NM_001099285	exon5	c.T334C	p.X112Q	GATGACTAGACAG	.	45.0	4.0	55.0	0.0	.	0	2	Atlas-SNP
KCNH4	23415	hgsc.bcm.edu	37	17	40323897	40323897	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	KCNH4,bladder,carcinoma,0,1	KCNH4	NM_012285	exon7	c.C1104T	p.V368V	CGCAAAGACCGAC	.	86.0	26.0	111.0	0.0	.	0	1	Atlas-SNP
COL21A1	81578	hgsc.bcm.edu	37	6	56035583	56035583	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_030820	exon5	c.T890C	p.L297S	CTCCATAAATCCC	.	261.0	24.0	229.0	0.0	.	.	.	Atlas-SNP
KRTAP4-6	81871	hgsc.bcm.edu	37	17	39296317	39296317	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	KRTAP4-6,NS,carcinoma,-1,1	KRTAP4-6	NM_030976	exon1	c.T423C	p.R141R	GCTGGGACGGCAG	.	67.0	5.0	68.0	0.0	.	-1	1	Atlas-SNP
APOB	338	hgsc.bcm.edu	37	2	21239410	21239410	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_000384	exon21	c.G3233C	p.R1078T	TTAACTCTGAGGA	.	162.0	23.0	235.0	0.0	.	.	.	Atlas-SNP
DBNL	28988	hgsc.bcm.edu	37	7	44098556	44098556	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_001122956	exon9	c.C836A	p.T279N	TGTCCACCACCTC	.	101.0	20.0	96.0	0.0	.	.	.	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	37	8	3855559	3855559	+	Nonsense_Mutation	SNP	G	G	C	rs372509834	alternate_allele	TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_033225	exon5	c.C684G	p.Y228X	GTTCTCGTACTCT	.	117.0	13.0	144.0	0.0	.	.	.	Atlas-SNP
GDF2	2658	hgsc.bcm.edu	37	10	48413904	48413904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_016204	exon2	c.G964A	p.G322R	CAGCCCCGGCGCT	.	62.0	16.0	91.0	0.0	.	.	.	Atlas-SNP
C9orf139	401563	hgsc.bcm.edu	37	9	139927646	139927646	+	Missense_Mutation	SNP	C	C	A	rs368472017		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_207511	exon2	c.C131A	p.A44E	CCCAGGCGTGGCC	.	57.0	17.0	103.0	0.0	.	.	.	Atlas-SNP
ND5	0	hgsc.bcm.edu	37	MT	14060	14060	+	Missense_Mutation	SNP	T	T	C	rs201017328	alternate_allele	TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	ENST00000361567	exon1	c.T1724C	p.I575T	CCTCCATCATCAC	.	17.0	6.0	22.0	0.0	.	.	.	Atlas-SNP
ASXL3	80816	hgsc.bcm.edu	37	18	31324017	31324017	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_030632	exon12	c.C4205T	p.A1402V	CTGTAGCGGTCAC	.	72.0	32.0	149.0	0.0	.	.	.	Atlas-SNP
TRMT6	51605	hgsc.bcm.edu	37	20	5923280	5923280	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_015939	exon7	c.A820G	p.M274V	ATAACATCTTGGC	.	116.0	74.0	208.0	0.0	.	.	.	Atlas-SNP
DDX23	9416	hgsc.bcm.edu	37	12	49231066	49231066	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_004818	exon8	c.C864T	p.P288P	TCACAGGGGGTTG	.	143.0	44.0	148.0	0.0	.	.	.	Atlas-SNP
F5	2153	hgsc.bcm.edu	37	1	169483622	169483622	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	F5,colon,carcinoma,+1,1	F5	NM_000130	exon25	c.C6604T	p.R2202C	TGACACGGATAAA	.	124.0	7.0	124.0	0.0	.	+1	1	Atlas-SNP
TSHZ1	10194	hgsc.bcm.edu	37	18	72999575	72999575	+	Missense_Mutation	SNP	C	C	T	rs370322226		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	TSHZ1,NS,lymphoid_neoplasm,0,1	TSHZ1	NM_005786	exon2	c.C2078T	p.P693L	ACTCACCGGAGCC	.	32.0	8.0	46.0	0.0	.	0	1	Atlas-SNP
EPHA5	2044	hgsc.bcm.edu	37	4	66201775	66201775	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_004439	exon16	c.G2727T	p.Q909H	CATTAACTGATAG	.	270.0	18.0	207.0	0.0	.	.	.	Atlas-SNP
UBAP2	55833	hgsc.bcm.edu	37	9	33953311	33953311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_018449	exon12	c.C1028T	p.A343V	TTGACGGCAGTGG	.	131.0	21.0	164.0	0.0	.	.	.	Atlas-SNP
RUNX2	860	hgsc.bcm.edu	37	6	45390482	45390482	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	RUNX2_ENST00000352853,NS,carcinoma,0,2	RUNX2_ENST00000352853	NM_001024630	exon3	c.C211G	p.Q71E	CAGCAGCAGGAGG	.	29.0	2.0	28.0	0.0	.	0	2	Atlas-SNP
SCAP	22937	hgsc.bcm.edu	37	3	47459292	47459292	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	SCAP,caecum,carcinoma,-2,1	SCAP	NM_012235	exon17	c.G2472A	p.V824V	GCTGCCCACGCCA	.	101.0	21.0	141.0	1.0	.	-2	1	Atlas-SNP
SLFN5	162394	hgsc.bcm.edu	37	17	33591734	33591734	+	Silent	SNP	A	A	T	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_144975	exon4	c.A1671T	p.T557T	ACTGACAAATAAA	.	126.0	17.0	135.0	0.0	.	.	.	Atlas-SNP
QPCT	25797	hgsc.bcm.edu	37	2	37599594	37599594	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_012413	exon6	c.C919A	p.H307N	GATGACCATATTC	.	125.0	18.0	136.0	0.0	.	.	.	Atlas-SNP
EPHA6	285220	hgsc.bcm.edu	37	3	97194255	97194255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	EPHA6_ENST00000502694,extremity,malignant_melanoma,-1,2	EPHA6_ENST00000502694	NM_001080448	exon8	c.G1954A	p.G652R	GTTGGCGGATTCA	.	100.0	4.0	124.0	0.0	.	-1	2	Atlas-SNP
