Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
AUNIP	79000	hgsc.bcm.edu	37	1	26162011	26162013	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	AUNIP	NM_024037	exon3	c.546_548del	p.182_183del	.	.	188.0	38.0	177.0	0.0	.	1	.	Pindel,Atlas-Indel
TP53BP1	7158	hgsc.bcm.edu	37	15	43712824	43712833	+	Frame_Shift_Del	DEL	GTCTGGTGGA	GTCTGGTGGA	-	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	GTCTGGTGGA	GTCTGGTGGA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	TP53BP1	NM_001141980	exon21	c.4352_4361del	p.1451_1454del	.	.	53.0	10.0	54.0	0.0	.	157	.	Pindel,Atlas-Indel
ZNF717	100131827	hgsc.bcm.edu	37	3	75786761	75786761	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	.	NM_001128223	exon5	c.G2013A	p.G671G	GTTTTTCCCCGTG	.	85.0	6.0	90.0	0.0	.	.	.	Atlas-SNP
ADSS	159	hgsc.bcm.edu	37	1	244601040	244601040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	.	NM_001126	exon2	c.G214A	p.V72M	AATCCACAACAAC	.	86.0	32.0	116.0	0.0	.	.	.	Atlas-SNP
CADM1	23705	hgsc.bcm.edu	37	11	115080343	115080343	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	CADM1,NS,carcinoma,0,6	CADM1	NM_014333	exon8	c.C1029A	p.T343T	GGTGGTGGTTGTT	.	53.0	5.0	42.0	0.0	.	0	6	Atlas-SNP
ZNF7	7553	hgsc.bcm.edu	37	8	146067136	146067136	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	.	NM_003416	exon5	c.G644T	p.W215L	TGCATTGGGAAAT	.	100.0	4.0	51.0	0.0	.	.	.	Atlas-SNP
ACIN1	22985	hgsc.bcm.edu	37	14	23530737	23530737	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	.	NM_014977	exon17	c.C3368A	p.P1123H	ACCGGGGGTGGGG	.	79.0	11.0	70.0	0.0	.	.	.	Atlas-SNP
NR1H2	7376	hgsc.bcm.edu	37	19	50881822	50881822	+	Silent	SNP	A	A	G	rs61751954	bycluster	TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	.	NM_007121	exon6	c.A516G	p.K172K	TCGGAAACAGCAG	.	72.0	4.0	72.0	0.0	.	.	.	Atlas-SNP
SORBS3	10174	hgsc.bcm.edu	37	8	22424177	22424177	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	.	NM_005775	exon14	c.C1094T	p.P365L	CAGACCCTAGTGC	.	179.0	46.0	113.0	0.0	.	.	.	Atlas-SNP
CDRT15	146822	hgsc.bcm.edu	37	17	14139304	14139304	+	Silent	SNP	T	T	G	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	.	NM_001007530	exon3	c.A436C	p.R146R	CCAGCCTTCTTTT	.	398.0	64.0	322.0	0.0	.	.	.	Atlas-SNP
ZNF189	7743	hgsc.bcm.edu	37	9	104171915	104171915	+	Missense_Mutation	SNP	C	C	G	rs200682925	alternate_allele	TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	ZNF189,NS,carcinoma,0,1	ZNF189	NM_003452	exon3	c.C1865G	p.T622R	TGCACACAGCATG	.	60.0	24.0	76.0	0.0	.	0	1	Atlas-SNP
NEFH	4744	hgsc.bcm.edu	37	22	29885638	29885638	+	Missense_Mutation	SNP	T	T	A	rs190692435	bycluster	TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	NEFH,NS,lymphoid_neoplasm,0,1	NEFH	NM_021076	exon4	c.T2009A	p.V670E	CCCCAGTGAAGGC	.	231.0	11.0	185.0	2.0	.	0	1	Atlas-SNP
TMEM51-AS1	200197	hgsc.bcm.edu	37	1	15439099	15439099	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	.	.	.	.	.	TTTCTCCTCCCGG	.	139.0	7.0	75.0	0.0	.	.	.	Atlas-SNP
CSNK2A1	1457	hgsc.bcm.edu	37	20	485847	485847	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	.	NM_001895	exon3	c.G128A	p.R43Q	AATTTTCGAACCA	.	237.0	106.0	342.0	0.0	.	.	.	Atlas-SNP
TRIM51HP	440041	hgsc.bcm.edu	37	11	55063245	55063245	+	RNA	SNP	A	A	C	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	.	.	.	.	.	TTCTGAAAACCCA	.	26.0	11.0	40.0	0.0	.	.	.	Atlas-SNP
KIAA1551	55196	hgsc.bcm.edu	37	12	32137715	32137715	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	C12orf35,colon,carcinoma,0,1	C12orf35	NM_018169	exon4	c.G3826T	p.A1276S	TTAGTTGCTGGTC	.	144.0	6.0	67.0	1.0	.	0	1	Atlas-SNP
SHROOM4	57477	hgsc.bcm.edu	37	X	50350751	50350751	+	Missense_Mutation	SNP	G	G	C	rs201290098		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	.	NM_020717	exon6	c.C3391G	p.Q1131E	CCTCCTGTTGCTT	.	47.0	5.0	40.0	0.0	.	.	.	Atlas-SNP
