Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
MRPS25	64432	hgsc.bcm.edu	37	3	15094113	15094115	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	MRPS25	NM_022497	exon4	c.356_358del	p.119_120del	.	.	74.0	16.0	104.0	0.0	.	14	.	Pindel,Atlas-Indel
SLC38A1	81539	hgsc.bcm.edu	37	12	46622952	46622952	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_030674	exon5	c.G298A	p.G100R	GGATTCCAGTGTT	.	108.0	51.0	144.0	0.0	.	.	.	Atlas-SNP
CDC27	996	hgsc.bcm.edu	37	17	45234300	45234300	+	Missense_Mutation	SNP	G	G	T	rs199588670		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	CDC27_ENST00000531206,NS,carcinoma,0,10	CDC27_ENST00000531206	NM_001114091	exon7	c.C821A	p.A274D	CTAAGAGCTGCTG	.	43.0	3.0	48.0	2.0	.	0	10	Atlas-SNP
AKAP13	11214	hgsc.bcm.edu	37	15	86118561	86118561	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_006738	exon6	c.861+1G>T	.	CTAATGGTAAGTC	.	160.0	29.0	116.0	0.0	.	.	.	Atlas-SNP
ADCY2	108	hgsc.bcm.edu	37	5	7743791	7743791	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_020546	exon15	c.C1882T	p.L628L	TCCGTCCTGGGCA	.	182.0	91.0	201.0	0.0	.	.	.	Atlas-SNP
NADKD1	133686	hgsc.bcm.edu	37	5	36211999	36211999	+	Silent	SNP	A	A	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_001085411	exon7	c.T807A	p.L269L	TGGCAGAAGTTGG	.	47.0	16.0	82.0	0.0	.	.	.	Atlas-SNP
ZNF174	7727	hgsc.bcm.edu	37	16	3458752	3458752	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_003450	exon3	c.C1057A	p.P353T	GAGAGACCCTACA	.	111.0	25.0	142.0	0.0	.	.	.	Atlas-SNP
ASAP3	55616	hgsc.bcm.edu	37	1	23760787	23760787	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_017707	exon19	c.C1911A	p.C637X	CTTGAGGCAGTCG	.	107.0	5.0	129.0	0.0	.	.	.	Atlas-SNP
KRTAP5-8	57830	hgsc.bcm.edu	37	11	71249545	71249545	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	KRTAP5-8,NS,carcinoma,0,1	KRTAP5-8	NM_021046	exon1	c.C444T	p.C148C	CAGCTGCTGTAAG	.	38.0	7.0	54.0	0.0	.	0	1	Atlas-SNP
MS4A15	219995	hgsc.bcm.edu	37	11	60535051	60535051	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	MS4A15_ENST00000405633,caecum,carcinoma,0,1	MS4A15_ENST00000405633	NM_001098835	exon3	c.G271T	p.V91L	GGCAGCGTGCTGC	.	51.0	3.0	104.0	0.0	.	0	1	Atlas-SNP
BTN2A3P	54718	hgsc.bcm.edu	37	6	26422353	26422353	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	BTN2A3,NS,carcinoma,0,9	BTN2A3	.	.	.	.	ATGGAACCAGCTG	.	82.0	6.0	111.0	0.0	.	0	9	Atlas-SNP
VWA2	340706	hgsc.bcm.edu	37	10	116044682	116044682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_001272046	exon10	c.G950A	p.G317D	TGGACGGCTACCA	.	40.0	18.0	59.0	0.0	.	.	.	Atlas-SNP
ZNF135	7694	hgsc.bcm.edu	37	19	58578756	58578756	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	ZNF135,caecum,carcinoma,0,1	ZNF135	NM_007134	exon4	c.G976T	p.E326X	TGCAGCGAATGTG	.	72.0	3.0	87.0	0.0	.	0	1	Atlas-SNP
PLAC4	191585	hgsc.bcm.edu	37	21	42551433	42551433	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_182832	exon1	c.C123T	p.P41P	GTGTCTGGGGTGA	.	89.0	4.0	118.0	0.0	.	.	.	Atlas-SNP
