Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
WDR87	83889	hgsc.bcm.edu	37	19	38377122	38377124	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	TTC	TTC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	WDR87	NM_031951	exon6	c.7071_7073del	p.2357_2358del	.	.	227.0	15.0	257.0	0.0	.	191	.	Atlas-Indel
TPST2	8459	hgsc.bcm.edu	37	22	26936904	26936906	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	TPST2	NM_003595	exon3	c.692_694del	p.231_232del	.	.	102.0	10.0	105.0	0.0	.	23	.	Atlas-Indel
HERC1	8925	hgsc.bcm.edu	37	15	63904544	63904545	+	Frame_Shift_Del	DEL	CG	CG	-	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	HERC1	NM_003922	exon77	c.14306_14307del	p.4769_4769del	.	.	171.0	16.0	174.0	0.0	.	624	.	Atlas-Indel
ATXN3	4287	hgsc.bcm.edu	37	14	92537354	92537355	+	In_Frame_Ins	INS	-	-	CTGCTGCTGCTGCTGCTG	rs76478261	alternate_allele	TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	ATXN3,NS,carcinoma,0,7	ATXN3	NM_004993	exon10	c.916_917insCAGCAGCAGCAGCAGCAG	p.G306delinsQQQQQQG	.	.	60.0	12.0	79.0	0.0	.	46	.	Atlas-Indel
GON4L	54856	hgsc.bcm.edu	37	1	155733205	155733205	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001037533	exon22	c.G4624T	p.D1542Y	TTTCATCCTCTTT	.	101.0	6.0	80.0	0.0	.	.	.	Atlas-SNP
SH3D21	79729	hgsc.bcm.edu	37	1	36775175	36775175	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001162530	exon10	c.G753A	p.V251V	GAAAGTGGTATCT	.	65.0	10.0	60.0	0.0	.	.	.	Atlas-SNP
EIF3B	8662	hgsc.bcm.edu	37	7	2404052	2404052	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001037283	exon6	c.C1045T	p.L349L	ACCTACCTGGCTA	.	100.0	4.0	111.0	0.0	.	.	.	Atlas-SNP
SRCAP	10847	hgsc.bcm.edu	37	16	30734457	30734457	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_006662	exon24	c.C4066G	p.P1356A	CCCACACCTACTC	.	129.0	9.0	120.0	0.0	.	.	.	Atlas-SNP
COG1	9382	hgsc.bcm.edu	37	17	71204453	71204453	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_018714	exon14	c.G2806T	p.V936F	TGGCAGGTTGTCC	.	65.0	7.0	77.0	0.0	.	.	.	Atlas-SNP
HNRNPUL2	221092	hgsc.bcm.edu	37	11	62490079	62490079	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	HNRNPUL2,NS,carcinoma,-1,1	HNRNPUL2	NM_001079559	exon6	c.C1089T	p.C363C	AGCAAAGCAGCCA	.	148.0	15.0	180.0	0.0	.	-1	1	Atlas-SNP
RUNX2	860	hgsc.bcm.edu	37	6	45390457	45390457	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001024630	exon3	c.G186A	p.Q62Q	GCAGCAGCAGCAG	.	48.0	8.0	45.0	0.0	.	.	.	Atlas-SNP
KIAA0040	9674	hgsc.bcm.edu	37	1	175129958	175129958	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001162895	exon3	c.G192C	p.K64N	CTTGTTCTTCTCT	.	113.0	7.0	107.0	0.0	.	.	.	Atlas-SNP
CTNNA2	1496	hgsc.bcm.edu	37	2	80772149	80772149	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001164883	exon10	c.G1333T	p.V445L	GAAGGGGTGAAAT	.	76.0	8.0	78.0	0.0	.	.	.	Atlas-SNP
PCMTD1	115294	hgsc.bcm.edu	37	8	52732961	52732961	+	Missense_Mutation	SNP	G	G	A	rs399592	bycluster;byfrequency;bysubmitter	TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	PCMTD1,NS,carcinoma,+1,2	PCMTD1	NM_052937	exon6	c.C1024T	p.P342S	GGAGGGGCAGCTT	.	74.0	6.0	69.0	2.0	0.500	+1	2	Atlas-SNP
PIEZO1	9780	hgsc.bcm.edu	37	16	88800395	88800395	+	Missense_Mutation	SNP	C	C	G	rs202139830		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001142864	exon17	c.G2248C	p.E750Q	CCTCCTCCTGCTG	.	71.0	5.0	66.0	0.0	.	.	.	Atlas-SNP
GRM8	2918	hgsc.bcm.edu	37	7	126086148	126086148	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001127323	exon10	c.G2709C	p.K903N	CCCGCTCTTGACC	.	66.0	5.0	97.0	0.0	.	.	.	Atlas-SNP
PTGES3L-AARSD1	100885850	hgsc.bcm.edu	37	17	41108298	41108298	+	Missense_Mutation	SNP	T	T	G	rs199585384	alternate_allele	TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001136042	exon11	c.A1108C	p.I370L	CCCGAATGGGCCC	.	112.0	5.0	118.0	0.0	.	.	.	Atlas-SNP
SDC3	9672	hgsc.bcm.edu	37	1	31347395	31347395	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_014654	exon4	c.A911G	p.E304G	TCTGGCTCATCCC	.	88.0	4.0	113.0	0.0	.	.	.	Atlas-SNP
RBM25	58517	hgsc.bcm.edu	37	14	73577750	73577750	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_021239	exon15	c.C1904G	p.P635R	CAACACCTAACAC	.	90.0	6.0	60.0	0.0	.	.	.	Atlas-SNP
MIR223	407008	hgsc.bcm.edu	37	X	65238810	65238810	+	RNA	SNP	C	C	G	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	.	.	.	.	GCGGCACATGCTT	.	166.0	28.0	168.0	0.0	.	.	.	Atlas-SNP
EP300	2033	hgsc.bcm.edu	37	22	41573417	41573417	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001429	exon31	c.C5702T	p.A1901V	GTAAGGCAGCAGG	.	215.0	23.0	172.0	0.0	.	.	.	Atlas-SNP
TTC27	55622	hgsc.bcm.edu	37	2	33012134	33012134	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_017735	exon16	c.G1916A	p.S639N	TCACCAGCACTGA	.	135.0	7.0	131.0	0.0	.	.	.	Atlas-SNP
ZNF880	400713	hgsc.bcm.edu	37	19	52887146	52887146	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	ZNF880,colon,carcinoma,-1,1	ZNF880	NM_001145434	exon4	c.A313T	p.K105X	TCTCTTAAAAATC	.	242.0	11.0	276.0	0.0	.	-1	1	Atlas-SNP
MRPS31P5	100887750	hgsc.bcm.edu	37	13	52741936	52741936	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	.	.	.	.	TTCTTCCTTGTGA	.	65.0	8.0	71.0	0.0	.	.	.	Atlas-SNP
CES2	8824	hgsc.bcm.edu	37	16	66977848	66977848	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_003869	exon12	c.A1792G	p.R598G	GCCCACAGGCTCC	.	98.0	4.0	104.0	0.0	.	.	.	Atlas-SNP
LRRC66	339977	hgsc.bcm.edu	37	4	52861139	52861139	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001024611	exon4	c.C2049T	p.N683N	TTCCTTGTTAGCA	.	80.0	7.0	80.0	0.0	.	.	.	Atlas-SNP
