Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
DMKN	93099	hgsc.bcm.edu	37	19	36002421	36002421	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	DMKN,colon,carcinoma,0,1	DMKN	NM_001126058	exon5	c.T810C	p.G270G	GCTGCCACCACTG	.	27.0	7.0	24.0	0.0	.	0	1	Atlas-SNP
CNTN5	53942	hgsc.bcm.edu	37	11	100211902	100211902	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	CNTN5_ENST00000524871,bladder,carcinoma,-2,2	CNTN5_ENST00000524871	NM_001243270	exon22	c.C2995A	p.P999T	GTCATACCATTAG	.	114.0	10.0	272.0	0.0	.	-2	2	Atlas-SNP
SSC5D	284297	hgsc.bcm.edu	37	19	56029621	56029621	+	Silent	SNP	A	A	C	rs202012508	bycluster	TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001144950	exon14	c.A3978C	p.T1326T	CCCCACAACTCCT	.	100.0	8.0	118.0	0.0	.	.	.	Atlas-SNP
PTMA	5757	hgsc.bcm.edu	37	2	232577559	232577559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	PTMA,NS,carcinoma,0,2	PTMA	NM_001099285	exon5	c.T334C	p.X112Q	GATGACTAGACAG	.	45.0	3.0	62.0	0.0	.	0	2	Atlas-SNP
MKNK1-AS1	100507423	hgsc.bcm.edu	37	1	47014821	47014821	+	RNA	SNP	A	A	G	rs72679863	bycluster	TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	.	.	.	.	AAAAAAAAAAAGA	.	42.0	6.0	84.0	0.0	1.000	.	.	Atlas-SNP
ACIN1	22985	hgsc.bcm.edu	37	14	23548798	23548798	+	Missense_Mutation	SNP	C	C	A	rs74036910	bycluster;by1000genomes	TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001164814	exon6	c.G1920T	p.R640S	ACGTGACCTTGAT	.	149.0	27.0	159.0	0.0	0.500	.	.	Atlas-SNP
ACIN1	22985	hgsc.bcm.edu	37	14	23548783	23548783	+	Silent	SNP	A	A	T	rs78164858	bycluster;byfrequency;by1000genomes	TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001164814	exon6	c.T1935A	p.S645S	TGAACGAGAACGT	.	127.0	31.0	125.0	0.0	0.123	.	.	Atlas-SNP
C10orf137	26098	hgsc.bcm.edu	37	10	127412441	127412441	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	C10orf137_ENST00000356792,NS,carcinoma,+1,2	C10orf137_ENST00000356792	NM_015608	exon4	c.G446T	p.R149L	TACACCGCATAGG	.	313.0	22.0	680.0	0.0	.	+1	2	Atlas-SNP
TTC23	64927	hgsc.bcm.edu	37	15	99740253	99740253	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001040657	exon7	c.A630G	p.Q210Q	AGCTGCTTGATAG	.	74.0	18.0	147.0	0.0	.	.	.	Atlas-SNP
GPD1L	23171	hgsc.bcm.edu	37	3	32201135	32201135	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_015141	exon7	c.C928T	p.R310C	GTGTACCGCATCC	.	160.0	11.0	382.0	0.0	.	.	.	Atlas-SNP
RBM10	8241	hgsc.bcm.edu	37	X	47030582	47030582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001204468	exon4	c.G552T	p.E184D	GGAGGAGGATGAG	.	60.0	4.0	70.0	0.0	.	.	.	Atlas-SNP
ACIN1	22985	hgsc.bcm.edu	37	14	23548800	23548800	+	Silent	SNP	T	T	G	rs368418150	alternate_allele	TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001164814	exon6	c.A1918C	p.R640R	GTGACCTTGATCT	.	153.0	24.0	165.0	0.0	.	.	.	Atlas-SNP
RHOBTB3	22836	hgsc.bcm.edu	37	5	95067647	95067647	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	RHOBTB3,caecum,carcinoma,0,1	RHOBTB3	NM_014899	exon2	c.G87A	p.L29L	TTACCTGGGGAGA	.	316.0	25.0	292.0	0.0	.	0	1	Atlas-SNP
WDR66	144406	hgsc.bcm.edu	37	12	122359412	122359412	+	Silent	SNP	G	G	A	rs12824010	bycluster;by2hit2allele;byhapmap;by1000genomes	TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001178003	exon2	c.G201A	p.K67K	GGGGAAGGAGGAC	.	48.0	9.0	63.0	0.0	0.003	.	.	Atlas-SNP
PCDH15	65217	hgsc.bcm.edu	37	10	55583070	55583070	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001142763	exon35	c.C4437T	p.V1479V	TTCTGAGACTGAG	.	73.0	16.0	182.0	0.0	.	.	.	Atlas-SNP
SEMA6B	10501	hgsc.bcm.edu	37	19	4546434	4546434	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_032108	exon15	c.G1649A	p.G550D	CAGGAGCCGTCGG	.	122.0	7.0	98.0	0.0	.	.	.	Atlas-SNP
ZNF814	730051	hgsc.bcm.edu	37	19	58385793	58385793	+	Missense_Mutation	SNP	C	C	T	rs113623532	bycluster	TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001144989	exon3	c.G965A	p.R322K	TAAGGTCTTTTCC	.	92.0	21.0	155.0	0.0	0.500	.	.	Atlas-SNP
CROT	54677	hgsc.bcm.edu	37	7	87004971	87004971	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001143935	exon9	c.A764G	p.K255R	ACAAGAAGTGCCA	.	86.0	5.0	190.0	0.0	.	.	.	Atlas-SNP
ARSI	340075	hgsc.bcm.edu	37	5	149677844	149677844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	ARSI,NS,carcinoma,+2,2	ARSI	NM_001012301	exon2	c.C643T	p.R215C	TGGCGCGCTGGGC	.	62.0	5.0	94.0	0.0	.	+2	2	Atlas-SNP
SLC43A1	8501	hgsc.bcm.edu	37	11	57254608	57254608	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001198810	exon14	c.T1493C	p.F498S	GCCATGAAAAGTG	.	49.0	4.0	81.0	0.0	.	.	.	Atlas-SNP
ZNF814	730051	hgsc.bcm.edu	37	19	58385790	58385790	+	Missense_Mutation	SNP	G	G	T	rs111727691	bycluster	TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001144989	exon3	c.C968A	p.P323H	TCATAAGGTCTTT	.	92.0	18.0	159.0	0.0	0.500	.	.	Atlas-SNP
PAX1	5075	hgsc.bcm.edu	37	20	21687362	21687362	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	PAX1_ENST00000398485,NS,carcinoma,0,2	PAX1_ENST00000398485	NM_006192	exon2	c.C573A	p.I191I	TGGCATCTTTGCC	.	87.0	21.0	59.0	0.0	.	0	2	Atlas-SNP
RBBP5	5929	hgsc.bcm.edu	37	1	205084037	205084037	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_005057	exon3	c.A98G	p.N33S	CACCTGTTAAAGG	.	200.0	28.0	375.0	0.0	.	.	.	Atlas-SNP
KRTAP5-3	387266	hgsc.bcm.edu	37	11	1629156	1629156	+	Missense_Mutation	SNP	T	T	A	rs75371407		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	KRTAP5-3,NS,carcinoma,+2,1	KRTAP5-3	NM_001012708	exon1	c.A460T	p.S154C	AGCAGCTGGGCTT	.	109.0	5.0	147.0	2.0	0.500	+2	1	Atlas-SNP
