Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
TAAR2	9287	hgsc.bcm.edu	37	6	132945356	132945356	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	TAAR2	NM_001033080	exon1	c.60delG	p.K20fs	.	.	111.0	27.0	120.0	0.0	.	45	.	Pindel,Atlas-Indel
C1QTNF9	338872	hgsc.bcm.edu	37	13	24895902	24895902	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	C1QTNF9,bladder,carcinoma,0,1	C1QTNF9	NM_178540	exon4	c.C998A	p.P333Q	GCAGCCCGTGACA	.	88.0	6.0	109.0	2.0	.	0	1	Atlas-SNP
ATP8B2	57198	hgsc.bcm.edu	37	1	154321404	154321404	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_020452	exon28	c.G3482T	p.G1161V	GCTCCGGCTATGC	.	196.0	70.0	139.0	0.0	.	.	.	Atlas-SNP
PRKCSH	5589	hgsc.bcm.edu	37	19	11558370	11558370	+	Silent	SNP	G	G	A	rs77563879	bycluster	TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	PRKCSH,caecum,carcinoma,0,1	PRKCSH	NM_001001329	exon11	c.G966A	p.E322E	GGAGGAGGAAGAA	.	81.0	6.0	67.0	0.0	.	0	1	Atlas-SNP
HRC	3270	hgsc.bcm.edu	37	19	49657886	49657886	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_002152	exon1	c.G609A	p.E203E	GGCCTCCTCTTCC	.	90.0	9.0	61.0	0.0	.	.	.	Atlas-SNP
NCOR1	9611	hgsc.bcm.edu	37	17	15973655	15973655	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_001190440	exon30	c.C4385T	p.S1462F	TGCCGGGAACGCA	.	186.0	63.0	184.0	0.0	.	.	.	Atlas-SNP
PAXIP1	22976	hgsc.bcm.edu	37	7	154738434	154738434	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_007349	exon18	c.C3012T	p.S1004S	CTGCTTGGATAAC	.	153.0	35.0	168.0	0.0	.	.	.	Atlas-SNP
HRC	3270	hgsc.bcm.edu	37	19	49657916	49657916	+	Silent	SNP	T	T	C	rs7409255		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_002152	exon1	c.A579G	p.E193E	CTCCTCTTCTCCT	.	94.0	8.0	68.0	0.0	.	.	.	Atlas-SNP
TRMU	55687	hgsc.bcm.edu	37	22	46749663	46749663	+	Splice_Site	SNP	G	G	C	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_018006	exon8	c.773-1G>C	.	TCTGTAGGTTGGT	.	319.0	91.0	228.0	0.0	.	.	.	Atlas-SNP
CDC27	996	hgsc.bcm.edu	37	17	45232075	45232075	+	Missense_Mutation	SNP	A	A	T	rs199711781	bycluster	TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	CDC27_ENST00000531206,NS,carcinoma,0,2	CDC27_ENST00000531206	NM_001114091	exon8	c.T920A	p.V307E	TCAATTACAGGAG	.	101.0	5.0	80.0	2.0	0.001	0	2	Atlas-SNP
TCERG1	10915	hgsc.bcm.edu	37	5	145838692	145838692	+	Silent	SNP	G	G	A	rs371770535	alternate_allele	TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_006706	exon4	c.G684A	p.Q228Q	GGCCCAGGCTCAG	.	133.0	9.0	149.0	0.0	.	.	.	Atlas-SNP
THAP11	57215	hgsc.bcm.edu	37	16	67876829	67876829	+	Silent	SNP	G	G	A	rs199582467		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	THAP11,NS,carcinoma,0,1	THAP11	NM_020457	exon1	c.G372A	p.Q124Q	ACAGCAGCAGCAG	.	70.0	4.0	33.0	0.0	0.002	0	1	Atlas-SNP
MIPEPP3	650794	hgsc.bcm.edu	37	13	21896648	21896648	+	RNA	SNP	A	A	G	rs34913782	bycluster;byfrequency;by1000genomes	TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	.	.	.	.	CGCCGCACAGCAC	.	4.0	4.0	6.0	0.0	0.410	.	.	Atlas-SNP
FNDC3B	64778	hgsc.bcm.edu	37	3	172065071	172065071	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_001135095	exon21	c.G2434T	p.E812X	TCCTTAGAACTCA	.	90.0	5.0	87.0	0.0	.	.	.	Atlas-SNP
COL3A1	1281	hgsc.bcm.edu	37	2	189868987	189868987	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_000090	exon40	c.C2828T	p.A943V	AGGGAGCTCCAGG	.	274.0	98.0	289.0	0.0	.	.	.	Atlas-SNP
CASC5	57082	hgsc.bcm.edu	37	15	40949336	40949336	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_170589	exon24	c.A6659T	p.H2220L	CCCAGCATCAGTT	.	220.0	49.0	146.0	0.0	.	.	.	Atlas-SNP
MED1	5469	hgsc.bcm.edu	37	17	37571338	37571338	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_004774	exon16	c.C1440T	p.Y480Y	CCCTTTGTAGAGT	.	198.0	57.0	165.0	0.0	.	.	.	Atlas-SNP
