Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
KLHL32	114792	hgsc.bcm.edu	37	6	97424037	97424037	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_052904	exon3	c.G188T	p.C63F	CAGCATGCAGTGA	.	77.0	4.0	89.0	0.0	.	.	.	Atlas-SNP
FAM83H	286077	hgsc.bcm.edu	37	8	144810755	144810755	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_198488	exon5	c.C876A	p.A292A	CATGCGGGCCAGG	.	56.0	5.0	48.0	0.0	.	.	.	Atlas-SNP
DENND4B	9909	hgsc.bcm.edu	37	1	153907297	153907297	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	DENND4B_ENST00000361217,NS,carcinoma,0,6	DENND4B_ENST00000361217	NM_014856	exon18	c.G2712A	p.Q904Q	CTGCTGCTGCTGC	.	45.0	8.0	41.0	1.0	.	0	6	Atlas-SNP
MAGI2	9863	hgsc.bcm.edu	37	7	77755017	77755017	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_012301	exon20	c.G3561C	p.R1187S	CCTCATCCTCCCA	.	272.0	24.0	176.0	0.0	.	.	.	Atlas-SNP
DHFR	1719	hgsc.bcm.edu	37	5	79950296	79950296	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_000791	exon1	c.C13A	p.L5I	AGTTTAGCGAACC	.	128.0	6.0	160.0	0.0	.	.	.	Atlas-SNP
DDX3X	1654	hgsc.bcm.edu	37	X	41205590	41205590	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_001193416	exon13	c.G1424C	p.R475P	GAGACCGTTCTCA	.	183.0	14.0	144.0	0.0	.	.	.	Atlas-SNP
LRBA	987	hgsc.bcm.edu	37	4	151837605	151837605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_006726	exon7	c.C842T	p.S281L	CCTTTTGACTTTA	.	194.0	12.0	232.0	0.0	.	.	.	Atlas-SNP
EMC9	51016	hgsc.bcm.edu	37	14	24608338	24608338	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_016049	exon6	c.C508A	p.Q170K	GGTGCTGGTGGGC	.	268.0	47.0	196.0	0.0	.	.	.	Atlas-SNP
INHBA-AS1	285954	hgsc.bcm.edu	37	7	41797988	41797988	+	RNA	SNP	A	A	G	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	.	.	.	.	TTTTCCATTCATT	.	13.0	5.0	9.0	0.0	.	.	.	Atlas-SNP
BAHD1	22893	hgsc.bcm.edu	37	15	40751684	40751684	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_014952	exon2	c.G1021T	p.E341X	AAGCAGGAACTGC	.	154.0	33.0	96.0	0.0	.	.	.	Atlas-SNP
BAHD1	22893	hgsc.bcm.edu	37	15	40751683	40751683	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	BAHD1,NS,carcinoma,+2,1	BAHD1	NM_014952	exon2	c.G1020T	p.Q340H	TAAGCAGGAACTG	.	157.0	34.0	97.0	0.0	.	+2	1	Atlas-SNP
SLCO3A1	28232	hgsc.bcm.edu	37	15	92671632	92671632	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_013272	exon7	c.T1425C	p.C475C	TAACTGTGAATGC	.	148.0	6.0	111.0	0.0	.	.	.	Atlas-SNP
KPNA7	402569	hgsc.bcm.edu	37	7	98792933	98792933	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_001145715	exon4	c.C313T	p.P105S	TCAGAGGGGGGTT	.	110.0	13.0	83.0	0.0	.	.	.	Atlas-SNP
VPS16	64601	hgsc.bcm.edu	37	20	2843984	2843984	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_022575	exon15	c.C1416G	p.Y472X	CGAGTACTTGCGC	.	98.0	23.0	67.0	0.0	.	.	.	Atlas-SNP
VCAM1	7412	hgsc.bcm.edu	37	1	101186170	101186170	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_001078	exon2	c.A203T	p.N68I	CACTGAATGGGAA	.	196.0	50.0	189.0	0.0	.	.	.	Atlas-SNP
KIT	3815	hgsc.bcm.edu	37	4	55602664	55602664	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	KIT,caecum,carcinoma,0,3	KIT	NM_000222	exon18	c.G2485C	p.A829P	TTACAGGCTCGAC	.	77.0	23.0	90.0	0.0	.	0	3	Atlas-SNP
LRRTM3	347731	hgsc.bcm.edu	37	10	68686864	68686864	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_178011	exon2	c.T190A	p.L64I	GGTTGCTTAGGTT	.	69.0	11.0	95.0	0.0	.	.	.	Atlas-SNP
C1orf173	127254	hgsc.bcm.edu	37	1	75038768	75038768	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	C1orf173,NS,malignant_melanoma,0,1	C1orf173	NM_001002912	exon14	c.C2626G	p.P876A	TTTCAGGAGCCTC	.	103.0	21.0	109.0	0.0	.	0	1	Atlas-SNP
CDKN3	1033	hgsc.bcm.edu	37	14	54884583	54884583	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_005192	exon7	c.C466A	p.L156I	CTCCTACTATACC	.	186.0	11.0	150.0	0.0	.	.	.	Atlas-SNP
MIR548AE2	100616339	hgsc.bcm.edu	37	16	48295639	48295639	+	RNA	SNP	C	C	G	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	.	.	.	.	ATATAACTCTTGC	.	37.0	16.0	39.0	0.0	.	.	.	Atlas-SNP
ATP8A2	51761	hgsc.bcm.edu	37	13	26436476	26436476	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_016529	exon33	c.G3113A	p.W1038X	TGACCTGGCTGGT	.	110.0	42.0	115.0	0.0	.	.	.	Atlas-SNP
CCDC178	374864	hgsc.bcm.edu	37	18	30913247	30913247	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_001105528	exon9	c.C770G	p.A257G	ATCTTTGCATTTG	.	131.0	38.0	167.0	0.0	.	.	.	Atlas-SNP
LRFN2	57497	hgsc.bcm.edu	37	6	40360629	40360629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_020737	exon3	c.G1423T	p.A475S	CGAAGGCCTTGTT	.	61.0	16.0	69.0	0.0	.	.	.	Atlas-SNP
MAN2C1	4123	hgsc.bcm.edu	37	15	75656927	75656927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_001256494	exon5	c.G502A	p.E168K	TCTTCTCAGGGTC	.	96.0	16.0	86.0	0.0	.	.	.	Atlas-SNP
SCN9A	6335	hgsc.bcm.edu	37	2	167055703	167055703	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_002977	exon27	c.G5413A	p.A1805T	GTTTTGCTATGAG	.	225.0	9.0	230.0	0.0	.	.	.	Atlas-SNP
NASP	4678	hgsc.bcm.edu	37	1	46073158	46073158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_002482	exon6	c.C575T	p.A192V	AATCTGCAGAGGA	.	196.0	47.0	179.0	0.0	.	.	.	Atlas-SNP
SHOX2	6474	hgsc.bcm.edu	37	3	157823772	157823772	+	Missense_Mutation	SNP	C	C	G	rs376757024		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_003030	exon1	c.G42C	p.Q14H	CACTTTCTGGTCA	.	273.0	14.0	354.0	0.0	.	.	.	Atlas-SNP
TEKT4P2	100132288	hgsc.bcm.edu	37	21	9926693	9926693	+	RNA	SNP	C	C	A	rs75042048	bycluster;byfrequency;by1000genomes	TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	.	.	.	.	GCCCAACGGCTTT	.	17.0	6.0	7.0	0.0	0.601	.	.	Atlas-SNP
PBOV1	59351	hgsc.bcm.edu	37	6	138539259	138539259	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_021635	exon1	c.G274T	p.G92C	AGGAACCTTTCAT	.	189.0	36.0	153.0	0.0	.	.	.	Atlas-SNP
MIR1234	100302196	hgsc.bcm.edu	37	8	145625536	145625536	+	RNA	SNP	C	C	G	rs2291134	bycluster	TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	.	.	.	.	CCCCCCCCCCCCC	.	76.0	4.0	44.0	0.0	0.500	.	.	Atlas-SNP
