Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
SHROOM4	57477	hgsc.bcm.edu	37	X	50350757	50350757	+	Missense_Mutation	SNP	T	T	G	rs199502054		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_020717	exon6	c.A3385C	p.K1129Q	GTTGCTTCTGCTG	.	100.0	43.0	44.0	0.0	.	.	.	Atlas-SNP
CXorf28	100129464	hgsc.bcm.edu	37	X	3202175	3202175	+	RNA	SNP	A	A	G	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	.	.	.	.	ATACTAATTCTCC	.	106.0	43.0	90.0	0.0	.	.	.	Atlas-SNP
NLRP12	91662	hgsc.bcm.edu	37	19	54304502	54304502	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	NLRP12,caecum,carcinoma,0,1	NLRP12	NM_144687	exon7	c.T2735A	p.L912H	TTGCACGTGGGAT	.	50.0	4.0	79.0	0.0	.	0	1	Atlas-SNP
MIR620	693205	hgsc.bcm.edu	37	12	116586420	116586420	+	RNA	SNP	A	A	C	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	.	.	.	.	CTATATATATATA	.	326.0	26.0	232.0	0.0	.	.	.	Atlas-SNP
DST	667	hgsc.bcm.edu	37	6	56422278	56422278	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_015548	exon40	c.A6610G	p.R2204G	GTTGTCTATCAAT	.	142.0	43.0	154.0	0.0	.	.	.	Atlas-SNP
TENM4	26011	hgsc.bcm.edu	37	11	78380844	78380844	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_001098816	exon32	c.G6546A	p.K2182K	TCCTACCTTCAGC	.	160.0	56.0	212.0	0.0	.	.	.	Atlas-SNP
PKDREJ	10343	hgsc.bcm.edu	37	22	46658471	46658471	+	Missense_Mutation	SNP	G	G	T	rs149432283	bycluster;byfrequency;alternate_allele	TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_006071	exon1	c.C749A	p.P250Q	GCGGCCGGGCAGT	.	67.0	4.0	62.0	0.0	.	.	.	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1093393	1093393	+	Missense_Mutation	SNP	G	G	A	rs199525790		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	MUC2_ENST00000441003,NS,carcinoma,0,2	MUC2_ENST00000441003	NM_002457	exon30	c.G5212A	p.G1738S	CCCACCGGCACAC	.	43.0	6.0	30.0	2.0	.	0	2	Atlas-SNP
EPHA6	285220	hgsc.bcm.edu	37	3	96706454	96706454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_001080448	exon3	c.C731T	p.T244I	TCGACACAATTGC	.	172.0	41.0	186.0	0.0	.	.	.	Atlas-SNP
SHROOM4	57477	hgsc.bcm.edu	37	X	50350748	50350748	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_020717	exon6	c.G3394C	p.E1132Q	CCTCCTCCTGTTG	.	88.0	29.0	42.0	0.0	.	.	.	Atlas-SNP
PRAMEF4	400735	hgsc.bcm.edu	37	1	12942173	12942173	+	Missense_Mutation	SNP	C	C	G	rs71232900		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	PRAMEF4,NS,carcinoma,0,1	PRAMEF4	NM_001009611	exon3	c.G377C	p.C126S	AGGAAGCACCCAT	.	28.0	3.0	18.0	0.0	0.500	0	1	Atlas-SNP
ANKRD11	29123	hgsc.bcm.edu	37	16	89347466	89347466	+	Silent	SNP	C	C	T	rs140164595		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_001256183	exon9	c.G5484A	p.S1828S	TTCCATCGAGGGT	.	56.0	25.0	41.0	0.0	0.000	.	.	Atlas-SNP
CCNB3	85417	hgsc.bcm.edu	37	X	50053935	50053935	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_033031	exon5	c.T2766C	p.N922N	CATCAATGAGGCA	.	214.0	10.0	162.0	0.0	.	.	.	Atlas-SNP
PCDHB16	57717	hgsc.bcm.edu	37	5	140563853	140563853	+	Silent	SNP	T	T	C	rs111302655	bycluster;byfrequency;by1000genomes	TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	PCDHB16,rectum,carcinoma,0,2	PCDHB16	NM_020957	exon1	c.T1719C	p.T573T	CTGCACTGAGCTG	.	7.0	7.0	18.0	1.0	0.117	0	2	Atlas-SNP
SHROOM4	57477	hgsc.bcm.edu	37	X	50350752	50350752	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_020717	exon6	c.A3390G	p.Q1130Q	CTCCTGTTGCTTC	.	93.0	35.0	40.0	0.0	.	.	.	Atlas-SNP
SGK223	0	hgsc.bcm.edu	37	8	8234868	8234868	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_001080826	exon2	c.G1051A	p.A351T	TACTGGCGCCGCT	.	164.0	11.0	78.0	0.0	.	.	.	Atlas-SNP
PCDHB8	56128	hgsc.bcm.edu	37	5	140559196	140559196	+	Silent	SNP	G	G	T	rs146788088	alternate_allele	TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	PCDHB8,NS,carcinoma,+1,1	PCDHB8	NM_019120	exon1	c.G1581T	p.A527A	GCAGGCGTTCGAG	.	78.0	4.0	85.0	2.0	.	+1	1	Atlas-SNP
MAP3K7	6885	hgsc.bcm.edu	37	6	91254350	91254350	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	MAP3K7_ENST00000369329,NS,carcinoma,-1,1	MAP3K7_ENST00000369329	NM_145331	exon12	c.C1212A	p.A404A	GGAATAGGCTGCA	.	188.0	60.0	154.0	0.0	.	-1	1	Atlas-SNP
MLL3	58508	hgsc.bcm.edu	37	7	152012230	152012230	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	MLL3_ENST00000355193,NS,carcinoma,0,2	MLL3_ENST00000355193	NM_170606	exon4	c.C583T	p.Q195X	TTCTCTGTCCTCT	.	274.0	71.0	215.0	0.0	.	0	2	Atlas-SNP
ARHGAP1	392	hgsc.bcm.edu	37	11	46717282	46717282	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_004308	exon3	c.G157C	p.E53Q	CAAGTTCCGGGGA	.	111.0	36.0	114.0	0.0	.	.	.	Atlas-SNP
FAM118B	79607	hgsc.bcm.edu	37	11	126126463	126126463	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_024556	exon7	c.G698C	p.R233T	TCCAGAGAGAAAT	.	47.0	17.0	53.0	0.0	.	.	.	Atlas-SNP
MLLT3	4300	hgsc.bcm.edu	37	9	20414373	20414373	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	MLLT3,NS,carcinoma,0,4	MLLT3	NM_004529	exon5	c.C471T	p.S157S	GCTGCTGCTACTG	.	42.0	4.0	36.0	1.0	.	0	4	Atlas-SNP
C17orf58	284018	hgsc.bcm.edu	37	17	65989082	65989082	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_181656	exon2	c.G181C	p.V61L	GACCTACAGCCCG	.	285.0	83.0	213.0	0.0	.	.	.	Atlas-SNP
COX1	5742	hgsc.bcm.edu	37	MT	6378	6378	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	ENST00000361624	exon1	c.T475C	p.L159L	TCTATCTTAGGGG	.	9.0	8.0	22.0	0.0	.	.	.	Atlas-SNP
RNR1	6052	hgsc.bcm.edu	37	MT	820	820	+	RNA	SNP	G	G	A	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	.	.	.	.	ACAGCAGTGATTA	.	163.0	13.0	190.0	0.0	.	.	.	Atlas-SNP
BMS1	9790	hgsc.bcm.edu	37	10	43312871	43312871	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_014753	exon15	c.G2509C	p.D837H	ATGTTTGATGCAG	.	53.0	19.0	58.0	0.0	.	.	.	Atlas-SNP
ZFP42	132625	hgsc.bcm.edu	37	4	188924033	188924033	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_174900	exon4	c.G72A	p.G24G	CAGTGGGGCTAAG	.	169.0	77.0	212.0	0.0	.	.	.	Atlas-SNP
FAT3	120114	hgsc.bcm.edu	37	11	92535075	92535075	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_001008781	exon9	c.G8896T	p.G2966X	ATTACAGGTGAGT	.	92.0	4.0	115.0	0.0	.	.	.	Atlas-SNP
