Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
RAPGEF1	2889	hgsc.bcm.edu	37	9	134497251	134497253	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	AGG	AGG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	RAPGEF1	NM_198679	exon11	c.1839_1841del	p.613_614del	.	.	144.0	23.0	141.0	0.0	.	126	.	Atlas-Indel
NEXN	91624	hgsc.bcm.edu	37	1	78407806	78407808	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	NEXN	NM_144573	exon12	c.1571_1573del	p.524_525del	.	.	157.0	26.0	161.0	0.0	.	77	.	Atlas-Indel
SCAMP2	10066	hgsc.bcm.edu	37	15	75143705	75143705	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_005697	exon5	c.A461C	p.Y154S	CACAGATAGTAGA	.	73.0	7.0	49.0	0.0	.	.	.	Atlas-SNP
KIT	3815	hgsc.bcm.edu	37	4	55599320	55599320	+	Missense_Mutation	SNP	G	G	C	rs121913506	bycluster	TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	KIT,colon,carcinoma,0,932	KIT	NM_000222	exon17	c.G2446C	p.D816H	GCCAGAGACATCA	.	98.0	24.0	96.0	0.0	.	0	932	Atlas-SNP
KRAS	3845	hgsc.bcm.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	G	rs121913529	bycluster	TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	KRAS_ENST00000256078,NS,adenocarcinoma,0,25136	KRAS_ENST00000256078	NM_004985	exon2	c.G35C	p.G12A	ACGCCACCAGCTC	.	285.0	48.0	197.0	0.0	.	0	25136	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1092884	1092884	+	Missense_Mutation	SNP	C	C	T	rs201415503		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	MUC2_ENST00000441003,NS,carcinoma,0,8	MUC2_ENST00000441003	NM_002457	exon30	c.C4703T	p.T1568M	CCACCACGGTGAC	.	57.0	5.0	44.0	1.0	.	0	8	Atlas-SNP
CCT6P3	643180	hgsc.bcm.edu	37	7	64528850	64528850	+	RNA	SNP	T	T	G	rs2949472	by1000genomes	TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	.	.	.	.	TCTGGCTTTTTTT	.	53.0	11.0	19.0	0.0	0.019	.	.	Atlas-SNP
TPRN	286262	hgsc.bcm.edu	37	9	140087027	140087027	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	TPRN_ENST00000409012,NS,malignant_melanoma,0,2	TPRN_ENST00000409012	NM_001128228	exon2	c.G1842A	p.E614E	CTCTTCCTCCTCC	.	75.0	6.0	77.0	0.0	.	0	2	Atlas-SNP
KIAA1551	55196	hgsc.bcm.edu	37	12	32134098	32134098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_018169	exon4	c.C209T	p.P70L	ATTATCCTCAACA	.	163.0	28.0	114.0	0.0	.	.	.	Atlas-SNP
PRX	57716	hgsc.bcm.edu	37	19	40901937	40901937	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_181882	exon7	c.G2322T	p.V774V	CAGCTTCACCTCT	.	88.0	33.0	64.0	0.0	.	.	.	Atlas-SNP
ANO7	50636	hgsc.bcm.edu	37	2	242142853	242142853	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	ANO7,NS,carcinoma,-1,1	ANO7	NM_001001891	exon9	c.C991T	p.P331S	TACCAGCCCCTGG	.	498.0	77.0	375.0	0.0	.	-1	1	Atlas-SNP
FAM8A1	51439	hgsc.bcm.edu	37	6	17602826	17602826	+	Nonsense_Mutation	SNP	G	G	T	rs74444948	bycluster;byfrequency	TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	FAM8A1,NS,carcinoma,-1,2	FAM8A1	NM_016255	exon2	c.G718T	p.E240X	GGCAGAGAATATG	.	69.0	8.0	48.0	1.0	0.008	-1	2	Atlas-SNP
NBPF10	100132406	hgsc.bcm.edu	37	1	145293535	145293535	+	Missense_Mutation	SNP	C	C	G	rs55936365		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	NBPF10,NS,carcinoma,0,2	NBPF10	NM_001039703	exon1	c.C130G	p.L44V	TGTTTTCTAACTC	.	92.0	9.0	67.0	1.0	.	0	2	Atlas-SNP
BCL2L14	79370	hgsc.bcm.edu	37	12	12232368	12232368	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_138723	exon2	c.C129T	p.F43F	TCTCTTCTCACCA	.	156.0	29.0	122.0	0.0	.	.	.	Atlas-SNP
APH1A	51107	hgsc.bcm.edu	37	1	150238547	150238547	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_001077628	exon7	c.A781G	p.I261V	GTGGGATGCGCAG	.	411.0	124.0	323.0	0.0	.	.	.	Atlas-SNP
ND5	0	hgsc.bcm.edu	37	MT	13448	13448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	ENST00000361567	exon1	c.C1112T	p.T371I	CTTCAACCTCCCT	.	20.0	9.0	18.0	0.0	.	.	.	Atlas-SNP
APOA4	337	hgsc.bcm.edu	37	11	116692311	116692311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_000482	exon3	c.C463T	p.R155C	GCTGGCGCCGCAG	.	43.0	11.0	38.0	0.0	.	.	.	Atlas-SNP
PNN	5411	hgsc.bcm.edu	37	14	39651005	39651005	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_002687	exon9	c.G2092T	p.G698C	CGATCAGGCAAAA	.	58.0	4.0	39.0	0.0	.	.	.	Atlas-SNP
MIR548H3	100302287	hgsc.bcm.edu	37	6	97720567	97720567	+	RNA	SNP	A	A	G	rs200808076	alternate_allele	TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	.	.	.	.	CAAATGAAACAAG	.	81.0	8.0	79.0	0.0	.	.	.	Atlas-SNP
