Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
COL1A2	1278	hgsc.bcm.edu	37	7	94042436	94042436	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_000089	exon26	c.T1545C	p.L515L	TGGTCTTGCTGGT	.	238.0	53.0	239.0	0.0	.	.	.	Atlas-SNP
RNF26	79102	hgsc.bcm.edu	37	11	119206597	119206597	+	Silent	SNP	C	C	G	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_032015	exon1	c.C765G	p.T255T	GGCTACCCAGGCA	.	31.0	8.0	45.0	0.0	.	.	.	Atlas-SNP
KRTAP2-4	85294	hgsc.bcm.edu	37	17	39221816	39221816	+	Nonsense_Mutation	SNP	C	C	T	rs200049107		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	KRTAP2-4,trunk,malignant_melanoma,0,1	KRTAP2-4	NM_033184	exon1	c.G282A	p.W94X	GGTGGCCCAGCAG	.	15.0	3.0	16.0	2.0	.	0	1	Atlas-SNP
ZNF814	730051	hgsc.bcm.edu	37	19	58385793	58385793	+	Missense_Mutation	SNP	C	C	T	rs113623532	bycluster	TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_001144989	exon3	c.G965A	p.R322K	TAAGGTCTTTTCC	.	132.0	20.0	126.0	0.0	0.500	.	.	Atlas-SNP
HLCS	3141	hgsc.bcm.edu	37	21	38269383	38269383	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_000411	exon7	c.G1228C	p.E410Q	CTCCCTCGGAGTC	.	100.0	4.0	102.0	0.0	.	.	.	Atlas-SNP
ABCF2	10061	hgsc.bcm.edu	37	7	150921079	150921079	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_005692	exon4	c.G489A	p.M163I	GACTTCCATCACA	.	94.0	14.0	101.0	0.0	.	.	.	Atlas-SNP
DENND4B	9909	hgsc.bcm.edu	37	1	153907297	153907297	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	DENND4B_ENST00000361217,NS,carcinoma,0,6	DENND4B_ENST00000361217	NM_014856	exon18	c.G2712A	p.Q904Q	CTGCTGCTGCTGC	.	50.0	9.0	48.0	0.0	.	0	6	Atlas-SNP
FARP2	9855	hgsc.bcm.edu	37	2	242350476	242350476	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_014808	exon6	c.G439C	p.D147H	AAGAGAGACCTGC	.	52.0	11.0	78.0	0.0	.	.	.	Atlas-SNP
ZFC3H1	196441	hgsc.bcm.edu	37	12	72028578	72028578	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_144982	exon11	c.A2266T	p.K756X	CAGATTTTGGAGG	.	48.0	11.0	59.0	0.0	.	.	.	Atlas-SNP
LEPROTL1	23484	hgsc.bcm.edu	37	8	29963269	29963269	+	Missense_Mutation	SNP	G	G	T	rs371805932		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_015344	exon4	c.G287T	p.W96L	TTGAGTGGGGAGC	.	88.0	9.0	89.0	0.0	.	.	.	Atlas-SNP
ADAMTS5	11096	hgsc.bcm.edu	37	21	28302337	28302337	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	ADAMTS5,colon,carcinoma,+1,2	ADAMTS5	NM_007038	exon7	c.G2093C	p.C698S	CGGACGCAGACGG	.	135.0	48.0	157.0	0.0	.	+1	2	Atlas-SNP
GRM1	2911	hgsc.bcm.edu	37	6	146720361	146720361	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	GRM1,leg,malignant_melanoma,-1,1	GRM1	NM_000838	exon8	c.C2186G	p.P729R	TGGAACCCCCTAT	.	167.0	22.0	221.0	0.0	.	-1	1	Atlas-SNP
EIF5B	9669	hgsc.bcm.edu	37	2	99992927	99992927	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_015904	exon10	c.G1670A	p.S557N	GAGAAAGTGAAGG	.	120.0	21.0	100.0	0.0	.	.	.	Atlas-SNP
KRT1	3848	hgsc.bcm.edu	37	12	53069243	53069243	+	Missense_Mutation	SNP	T	T	C	rs77846840	bycluster	TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_006121	exon9	c.A1669G	p.S557G	AGCTGCTACCTCC	.	28.0	9.0	21.0	0.0	0.500	.	.	Atlas-SNP
PRRC1	133619	hgsc.bcm.edu	37	5	126869374	126869374	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_130809	exon6	c.G817C	p.V273L	GCTGCTGTCCGAG	.	103.0	22.0	143.0	0.0	.	.	.	Atlas-SNP
GPR87	53836	hgsc.bcm.edu	37	3	151012124	151012124	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	GPR87,colon,carcinoma,+1,1	GPR87	NM_023915	exon3	c.G910C	p.A304P	TACACGCAGACAA	.	133.0	40.0	246.0	2.0	.	+1	1	Atlas-SNP
KIT	3815	hgsc.bcm.edu	37	4	55599340	55599340	+	Missense_Mutation	SNP	T	T	G	rs121913514	alternate_allele	TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	KIT,NS,malignant_melanoma,+2,48	KIT	NM_000222	exon17	c.T2466G	p.N822K	TTCTAATTATGTG	.	131.0	102.0	95.0	0.0	.	+2	48	Atlas-SNP
GNAT1	2779	hgsc.bcm.edu	37	3	50231244	50231244	+	Missense_Mutation	SNP	G	G	T	rs149647295	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	GNAT1,colon,carcinoma,0,1	GNAT1	NM_144499	exon5	c.G508T	p.V170L	CAGGACGTGCTGC	.	94.0	4.0	143.0	0.0	.	0	1	Atlas-SNP
PIP4K2A	5305	hgsc.bcm.edu	37	10	22830852	22830852	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_005028	exon8	c.G917A	p.G306D	TGGGTGCCATCGC	.	126.0	6.0	156.0	0.0	.	.	.	Atlas-SNP
CHST3	9469	hgsc.bcm.edu	37	10	73768085	73768085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_004273	exon3	c.G1296A	p.M432I	CAGCATGCCCTTC	.	68.0	18.0	72.0	0.0	.	.	.	Atlas-SNP
DNHD1	144132	hgsc.bcm.edu	37	11	6569159	6569159	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	DNHD1,colon,carcinoma,0,2	DNHD1	NM_144666	exon22	c.G6794T	p.R2265L	TAAACCGGTCCCA	.	60.0	3.0	66.0	0.0	.	0	2	Atlas-SNP
FAM24B-CUZD1	0	hgsc.bcm.edu	37	10	124596904	124596904	+	RNA	SNP	G	G	A	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	.	.	.	.	AGAATTGGGCAGC	.	100.0	19.0	83.0	0.0	.	.	.	Atlas-SNP
GLIS3	169792	hgsc.bcm.edu	37	9	3829449	3829449	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	GLIS3_ENST00000381971,NS,carcinoma,0,2	GLIS3_ENST00000381971	NM_001042413	exon10	c.C2517A	p.P839P	GGAATCGGGGTAG	.	86.0	4.0	131.0	0.0	.	0	2	Atlas-SNP
MIER3	166968	hgsc.bcm.edu	37	5	56219619	56219619	+	Missense_Mutation	SNP	C	C	G	rs375553373	alternate_allele	TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_152622	exon12	c.G1091C	p.G364A	GTCCCACCCAAAG	.	172.0	54.0	265.0	0.0	.	.	.	Atlas-SNP
MTF2	22823	hgsc.bcm.edu	37	1	93599295	93599295	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_007358	exon12	c.A1196G	p.K399R	GAAAGAAAAAATC	.	36.0	9.0	43.0	0.0	.	.	.	Atlas-SNP
GRAMD1B	57476	hgsc.bcm.edu	37	11	123489463	123489463	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_020716	exon18	c.C1964G	p.T655S	AATACACCACGCA	.	72.0	21.0	137.0	0.0	.	.	.	Atlas-SNP
OPLAH	26873	hgsc.bcm.edu	37	8	145111362	145111362	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_017570	exon14	c.C1909A	p.R637R	TGCCCCGCACTCG	.	86.0	4.0	92.0	0.0	.	.	.	Atlas-SNP
FOXD3	27022	hgsc.bcm.edu	37	1	63789225	63789225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_012183	exon1	c.G496A	p.G166S	CTGAGCGGCATCT	.	94.0	4.0	113.0	0.0	.	.	.	Atlas-SNP
NSD1	64324	hgsc.bcm.edu	37	5	176638277	176638277	+	Silent	SNP	A	A	T	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_022455	exon5	c.A2877T	p.G959G	TTCAGGAGGCTCC	.	168.0	50.0	226.0	0.0	.	.	.	Atlas-SNP
