Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
SFPQ	6421	hgsc.bcm.edu	37	1	35656135	35656135	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	SFPQ	NM_005066	exon4	c.1380delT	p.P460fs	.	.	355.0	43.0	391.0	0.0	.	51	.	Atlas-Indel
ADCK3	56997	hgsc.bcm.edu	37	1	227171330	227171332	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	ADCK3	NM_020247	exon9	c.1157_1159del	p.386_387del	.	.	141.0	18.0	181.0	0.0	.	77	.	Atlas-Indel
KIF1C	10749	hgsc.bcm.edu	37	17	4925727	4925727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	KIF1C,NS,carcinoma,0,1	KIF1C	NM_006612	exon22	c.G2351T	p.R784L	TGTGTCGCACCTA	.	69.0	3.0	87.0	0.0	.	0	1	Atlas-SNP
WDR7	23335	hgsc.bcm.edu	37	18	54424172	54424172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_052834	exon15	c.G2348A	p.S783N	GGTCCAGCAAATC	.	102.0	15.0	167.0	0.0	.	.	.	Atlas-SNP
ZSWIM8	23053	hgsc.bcm.edu	37	10	75558169	75558169	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	KIAA0913_ENST00000412131,NS,carcinoma,+2,3	KIAA0913_ENST00000412131	NM_015037	exon20	c.C4134T	p.N1378N	ATTGAACCCTAAT	.	64.0	10.0	88.0	0.0	.	+2	3	Atlas-SNP
TDRD6	221400	hgsc.bcm.edu	37	6	46661672	46661672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_001168359	exon1	c.G5807A	p.C1936Y	CCATGTGTACTGA	.	184.0	19.0	258.0	0.0	.	.	.	Atlas-SNP
TYRO3	7301	hgsc.bcm.edu	37	15	41870083	41870083	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	TYRO3_ENST00000263798,colon,carcinoma,0,4	TYRO3_ENST00000263798	NM_006293	exon19	c.2283-1G>T	.	ACCCCAGGTATGA	.	73.0	7.0	63.0	1.0	.	0	4	Atlas-SNP
PPAPDC1B	84513	hgsc.bcm.edu	37	8	38124886	38124886	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_032483	exon5	c.G362A	p.R121H	AAGCAGCGGTAGA	.	122.0	5.0	188.0	0.0	.	.	.	Atlas-SNP
MLLT3	4300	hgsc.bcm.edu	37	9	20414230	20414230	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_004529	exon5	c.A614T	p.E205V	GGTTTTTCCTTGT	.	185.0	36.0	271.0	0.0	.	.	.	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	37	19	38976839	38976839	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_001042723	exon34	c.G5544T	p.L1848L	CACCCTGCTGGTA	.	124.0	5.0	153.0	0.0	.	.	.	Atlas-SNP
CTSD	1509	hgsc.bcm.edu	37	11	1775040	1775040	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_001909	exon8	c.C1064A	p.T355K	TTGAGCGTGTAGT	.	77.0	10.0	111.0	0.0	.	.	.	Atlas-SNP
CELF3	11189	hgsc.bcm.edu	37	1	151679178	151679178	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_007185	exon9	c.C955T	p.Q319X	CCTGCTGCAGGGG	.	94.0	12.0	126.0	0.0	.	.	.	Atlas-SNP
FAM110C	642273	hgsc.bcm.edu	37	2	45630	45630	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_001077710	exon1	c.C756T	p.S252S	GGCGACGCTCACG	.	66.0	11.0	101.0	0.0	.	.	.	Atlas-SNP
BPIFA1	51297	hgsc.bcm.edu	37	20	31827688	31827688	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_016583	exon4	c.C400G	p.P134A	ACCATCCCTCTCG	.	92.0	11.0	125.0	0.0	.	.	.	Atlas-SNP
POLR3E	55718	hgsc.bcm.edu	37	16	22326410	22326410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_001258033	exon9	c.G523A	p.V175M	CCGCAGGTGCGGT	.	101.0	7.0	115.0	0.0	.	.	.	Atlas-SNP
PCDH15	65217	hgsc.bcm.edu	37	10	56077049	56077049	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_001142763	exon9	c.A873G	p.I291M	CTCAGGTATGGCA	.	75.0	10.0	118.0	0.0	.	.	.	Atlas-SNP
COBL	23242	hgsc.bcm.edu	37	7	51096848	51096848	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_015198	exon10	c.G1945C	p.D649H	CTTTGTCTTTCAC	.	197.0	43.0	248.0	0.0	.	.	.	Atlas-SNP
BIN2	51411	hgsc.bcm.edu	37	12	51685422	51685422	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_016293	exon10	c.C1468T	p.Q490X	GGTTCTGATTGTG	.	199.0	20.0	239.0	0.0	.	.	.	Atlas-SNP
ZNF778	197320	hgsc.bcm.edu	37	16	89294051	89294051	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_001201407	exon7	c.A1355G	p.K452R	CGTGTAAGGACTG	.	84.0	4.0	128.0	0.0	.	.	.	Atlas-SNP
DPF1	8193	hgsc.bcm.edu	37	19	38709684	38709684	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_001135155	exon4	c.C394T	p.L132L	TCTTCAGGGGTGC	.	67.0	8.0	68.0	0.0	.	.	.	Atlas-SNP
LRRC66	339977	hgsc.bcm.edu	37	4	52883329	52883329	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_001024611	exon1	c.A451T	p.K151X	GCACCTTCAGCAA	.	157.0	44.0	270.0	0.0	.	.	.	Atlas-SNP
CSDE1	7812	hgsc.bcm.edu	37	1	115262299	115262299	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	CSDE1,face,carcinoma,-1,1	CSDE1	NM_001242891	exon19	c.A2255G	p.Q752R	CCATCCTGAACTT	.	106.0	6.0	152.0	0.0	.	-1	1	Atlas-SNP
